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Page 1: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of

DNA Methylation in an Exogenous Promoter CpG Island

Heather M. O’Hagan, Helai P. Mohammad, Stephen B. Baylin

Page 2: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Green et al. EMBO rep. 2002

ARR Model for DNA Repair

Page 3: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Can the DNA Repair Process Lead to Aberrant Gene Silencing?

1) SIRT1 - protein/histone deacetylase that can be part of a PcG complex

2) EZH2 - HMT responsible for repressive histone marks, also in PcG complex

3) DNMT1 - involved in maintaining DNA methylation

4) DNMT3B - involved in de novo DNA methylation

• Tumor suppressor genes are often silenced in cancer cells.

• This silencing often occurs through epigenetic means such and chromatin modification and DNA methylation

Possible candidates for repair-induced silencing:

Page 4: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Treatment with tetracycline induces a double strand break in the inserted E-cad promoter

Page 5: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Treatment with tetracycline induces a double strand break in the inserted E-cad promoter

Page 6: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

DSB damage and/or repair induces the transient recruitment of SIRT1, DNMT1, and DNMT3B

Page 7: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

DSB damage and/or repair induces the transient recruitment of SIRT1, DNMT1, and DNMT3B

Page 8: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Effects of knockdown of SIRT1 by siRNA

Page 9: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Effects of knockdown of SIRT1 by siRNA

Page 10: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Changes in enrichment of silencing proteins and chromatin marks with knockdown of SIRT1

Page 11: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Changes in enrichment of silencing proteins and chromatin marks with knockdown of SIRT1

Page 12: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Inducing a DSB in a promoter can lead to silencing and the seeding of methylation

Page 13: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Inducing a DSB in a promoter can lead to silencing and the seeding of methylation

Page 14: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Reduction of SIRT1 during DNA damage decreases the number of silent clones that have methylation

Page 15: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Reduction of SIRT1 during DNA damage decreases the number of silent clones that have methylation

Page 16: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Conclusions

• Silencing proteins can be recruited to the site near a double strand break

• Prolonged recruitment may lead to seeding and spreading of DNA methylation

• Supports a role for DNA damage in the epigenetic silencing of genes in tumors.

Page 17: Double Strand Breaks Can Initiate Gene Silencing and SIRT1-Dependent Onset of DNA  Methylation  in an Exogenous Promoter  CpG  Island

Final questions or thoughts

• Are silencing proteins recruited during gene expression in order to rapidly turn genes off?– Could the same theory apply for genes being

expressed and not repaired?


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