Download - Data integration and visualization
![Page 1: Data integration and visualization](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e89bab4c90526358b493b/html5/thumbnails/1.jpg)
Lars Juhl Jensen
Data integration and visualization
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protein networks
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3+ years ahead
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STRING
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Huynen et al., Current Opinion in Structural Biology, 2000
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genomic context
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experimental data
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text mining
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~22 million abstracts
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~4 million full-text articles
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comprehensive lexicon
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proteins
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small molecules
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compartments
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tissues
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diseases
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organisms
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environments
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orthographics variation
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flexible matching
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hyphens and spaces
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expansion rules
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singular vs. plural
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“black list”
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relation extraction
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count co-mentioning
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within documents
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within paragraphs
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within sentences
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STRING
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Szklarczyk, Franceschini et al., Nucleic Acids Research, 2011
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payload
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compartments.jensenlab.org
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COMPARTMENTS
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compartments.jensenlab.org
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TISSUES
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tissues.jensenlab.org
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DISEASES
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visualization
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de Lichtenberg, Jensen et al., Science, 2005
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Ciccarelli, Doerks et al., Science, 2006
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von Mering et al., Science, 2007
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Jensen & Bork, Science, 2008
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