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The world leader in serving science
Coupling IC with Mass Spectrometry: Theory and Applications
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Reagent-Free™ Ion Chromatography System
28667
Electrolytic Eluent
Generator
High-Pressure Non-Metallic
Pump
Sample Injector (Autosampler)
H20
Separation Column
Degasser
Waste
Conductivity Detector
Data Management
Cell Effluent
Electrolytic Suppressor
Continuously
Regenerated
Trap Column
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Mass Spectrometer
An atmospheric pressure region
where ions are generated
Analyser Source
Detecto
r A detector (transducer) where
ions are recorded
A vacuum chamber where ions
are separated
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IC with MS-MS Flow Diagram
High-Pressure Non-Metallic Pump
Eluent Generator
(OH– or H+)
Waste
Sample Inject (Autosampler)
CR-TC
Electrolytic Eluent
Suppressor
Separation Column Conductivity Detector
0.31 µS Data
Management
Makeup Pump (ACN or IPA)
Thermo Scientific™ Mass Spectrometer
Thermo Scientific Dionex IC system
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Benefits of Ion Chromatography–Mass Spectrometry
• IC vs. LC
• Greater specificity and selectivity for ionic compounds
• Metal-free flow path reduces fouling of ion-exchange columns
• MS vs. conductivity detection (CD)
• Increased sensitivity and selectivity
• Identification and quantification of small polar analytes that have the same
retention times using single ion monitoring (SIM) or selective reaction monitoring
(SRM) for MS/MS
• High ionic strength matrices
• Reduces MS signal suppression and possible detector damage
• Analyte confirmation
• Combines the confirmation of analyte identification into one method
• Total integrated solution: IC, MS and data management
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Ion Chromatography is Ideal for Mass Spectrometry (MS)
• Analytes are provided in the ionic form needed for MS
detection
• Thermo Scientific Dionex suppressors allow the use of
standard IC elements and methods
• Eluent generators with deionized water feed allows for fast,
clean switching between anions and cations in IC-MS.
• Moreover, background is pure water after suppressor thus
allows easy and advantageous switching between anion IC
and cation IC into MS.
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IC to MS Interface
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Atmospheric Pressure Ionization (API)
• INTERFACE for the mass spectrometer
• Changes liquid from the IC or LC to a gas
• Introduces gas into the mass spectrometer
• It is an IONIZATION SOURCE
• Ionizes the liquid/gas and the analytes
• Operates in either positive or negative ion modes
• Two principal API techniques are:
• Electrospray Ionization (ESI) used for ion chromatography because the
analytes are already ionized
• Atmospheric Pressure Chemical Ionization (APCI) used primarily for
normal phase chromatography where analytes are not ionized
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Electrospray Nozzle Detail
N2 Gas
Sheath
Heated
ESI Probe
Ion Plume
Nebulizing
N2 Gas 5 kV
Thermally Assisted Pneumatic Nebulization
ESI Needle
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Electrospray Ionization
Advantages
• Preserves analyte molecular ion
• Sensitive and rugged
• Compatible with a broad range of compounds
Disadvantages
• High-aqueous mobile phase volatility
• Requires elevated ESI Probe temperature and post-column solvent
• Non-volatile buffers may precipitate inside ESI capillary
• Works best at low flow rates (2 mm i.d. columns)
• Ionization is inhibited by high salt concentrations
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Single Quadrupole MS
• Ions source, Mass analyzer (Quadtrupole) and Detector
• Scanning mode
• Filtering mode, Single ion monitoring (SIM)
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Triple Stage Quadrupole (TSQ)
Single Reaction Monitoring
m/z
Sig
nal
Q1 ANALYZER q2 COLLISION CELL Q3 ANALYZER
DETECTOR
• Two quadrupole mass analyzers, one collision cell
• MS or MS/MS with linked scans
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Single and Triple Quadrupole MS Analyzers
• MS single quadrupole analyzer
• Molecular ion
• Some fragmentation
• Triple Quadrupole MS-MS (Thermo Scientific TSQ or QqQ)
• Composed of a quadrupole (Q1), followed by a collision cell (q2),
another quadrupole (Q3), and detector
• Provides high specificity and focus of molecular ion by eliminating all
background ions
• Fragmentation to ensure improved signal to noise and specificity
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0
50
110
10 100 150 200 250 300
Phosphate RT: 5.4 Min
97
79 195
%
Re
l. In
ten
sity [%
]
m/z
Phosphate and Sulfate have the Same Nominal Mass/Charge (m/z = 97)
0
50
110
10 100 150 200 250 300
Sulfate RT: 3.6 Min
97
80
%
m/z R
el. In
ten
sity [%
]
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IC coupled with Single Quadrupole MS (Thermo Scientific™ MSQ Plus™)
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MSQ Plus MS is designed for IC
• Compact design
• Single quadrupole, low mass detector, 17–2000 m/z range
• Enhanced low-mass response for analytes below 60 m/z
• High-sensitivity, self-cleaning ESI ionization source
• Controlled and software:
• Thermo Scientific™ Dionex™ Chromeleon™ Chromatography Data
System (CDS) software or
• Thermo Scientific™ Xcalibur™ software
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Column: Thermo Scientific™ Dionex™
IonPac™ AS11, 2 250 mm
Eluent (EG): KOH
Gradient: 0.5–38 mM KOH (0 –18 min)
Flow Rate: 0.5 mL/min
Temp: 30 oC
Suppressor: Thermo Scientific™ Dionex™ ASRS™ Anion Self Regenerating Suppressor,
external water mode
MS Conditions: MSQ Plus MS, -ESI 50 V, 400 oC,
SIM
Inj. Vol.: 25 µL
SIM Peaks: µg/L SIM
1. Fluoride 130 19
2. Acetate 300 59
3. Formate 300 45
4. Bromate 100 127
5. Chloride 30 35
6. Nitrite 100 46
7. Bromide 100 81
8. Nitrate 100 62
9. Sulfate 150 97/99
10. Phosphate 15097
11. Citrate 300 191
Optimized for Detection of Very Low Mass Ions N
orm
aliz
ed R
esponse
0 5 10 15
Citrate
H2PO4-
HSO4-
Br-
NO3- NO2
-
Minutes
BrO3-
Acetate
Cl-
F- Formate
HSO4-
AN243
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Perchlorate Health Issues
• Interferes with thyroid hormone production
and metabolism regulation
• May cause tumors
• Interferes with neurological development of
fetus and infants
• Regulated under Safe Drinking Water Act (2011)
• Maximum Contamination Level of 6 µg/L (ppb) by 2013
• Promulgated to the states
• MA (2 µg/L); CA (6 to 1 µg/L)
• Other states: health screening limits of 4 to 51 µg/L
U.S. EPA website (www.epa.gov)
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High Ionic Matrix Spiked with 125 ppt Perchlorate and Internal Standard
Column: Dionex IonPac AS16,
2 250 mm
Eluent (EG): 45 mM KOH
Flow Rate: 0.30 mL/min
Temp: 30 °C
Suppressor: Dionex suppressor,
external water mode
Inj. Vol.: 100 µL
MS Conditions: MSQ Plus MS, -ESI,
Cone: 70 V,
Probe: -3kV, 450 °C,
Dwell: 1 s, Span: 0.3 amu
SIM as indicated
SIM Peaks: (ppt)
1. Perchlorate 125
1. Perchlorate Internal Std 1000
2. MCL (CA, MA) 1000–6000
Matrix: 1000 mg/L chloride, carbonate, and sulfate
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IC-MS of Sodium and Small Amines
Column: Dionex IonPac CS12A-MS,
2 × 100 mm
Eluent (EG): MSA
Gradient: 4–10 mM MSA (0–6 min),
10 mM (6–8 min)
Flow Rate: 0.25 mL/min
Temperature: 30 ºC
Suppressor: Dionex CSRS Suppressor,
external water mode
Inj. Vol.: 25 µl
MS Conditions: MSQ Plus MS, +ESI, 50 V,
350 ºC, SIM as indicated
SIM Peaks:
1. Sodium, m/z 23 (contaminant)
2. Methylamine, m/z 32 50 µg/L (ppb)
3. Dimethylamine, m/z 46 40
4. Trimethylamine, m/z 60 150
0 8 Minutes
1 2
3
4
4
Norm
aliz
ed R
esponse
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Column: Dionex IonPac CS12A-MS,
2 × 100 mm
Eluent (EG): MSA
Gradient: 4–10 mM MSA 0–6 min,
10 mM 6–8 min
Flow Rate: 0.25 mL/min
Temp: 30 °C
Suppressor: Dionex CSRS suppressor,
external water mode
Inj. Vol.: 25 µL
MS Conditions: MSQ Plus, +ESI, 50 V,
350 °C, SIM as indicated
SIM Peaks:
1. Diethanolamine
2. Potassium, m/z 39 200 µg/L (ppb)
0 2 4 6 8
0
11 140,000
µS counts
Minutes
SIM 39
Conductivity
1 2
2
Low Level Potassium in Diethanolamine by IC-MS
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Separation and Detection of Arsenic Species Using A Dual RFIC System with MS (-SIM and +SIM)
Anion-Exchange
(Dionex IonPac AS18 column)
Mixed Mode
(Dionex IonPac AC15 + Dionex IonPac CS5A columns)
–10
90 µs
0
18,000
Counts
–10,000
70,000
Counts
0
9000
Counts
0
450,000
Counts
0
40,000
Counts
0
70,000
Counts
0 6 12 18 24 30 0
550,000
Counts
Minutes
Conductivity
–SIM 107, Arsenite
+SIM 139, Dimethylarsinate
–SIM 141, Arsenate
+SIM 141, Methane Arsonate
+SIM 179, Arsenobetaine
–SIM 35, Chloride
+SIM 23, Sodium
Slingsby et al., Am. Lab., 2007
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Oxyhalides and Bromide in Drinking Water by IC-MS
counts
SIM_01 (Chlorite): m/z 67 SIM_02 (Bromide): m/z 79 SIM_03 (Bromate): m/z 129 SIM_04 (Iodate): m/z 175
0.0 5.0 10.0 15.0 20.0 25.0 30.0 35.0 -5 e3
2 e4
4.5 e4
Minutes
4
Io
da
te
3
Bro
ma
te
2 1
Ch
lori
te
0.0 5.0 10.0 15.0 20.0 25.0 30.0 35.0 -2 e3
1 e4
2.2 e4
counts
4
Io
da
te
Bro
ma
te
2
Bro
mid
e
1,3 C
hlo
rite
Column: Dionex IonPac
AG19/AS19, 2 mm i.d.
Eluent: KOH gradient
Flow: 0.25 mL/min
Detection: Suppressed conductivity
Background
Signal: < 3 S/cm
Suppressor: Dionex ASRS suppressor,
2 mm, external water
mode
Temperature: 30 °C
Inj. Vol.: 250 µL
MS Conditions: MSQ Plus, negative ESI
Needle Volt.: 3 kV
Cone Volt: 50 V (chlorite) and 75 V
(iodate, bromate and
bromide)
Probe Temp.: 400 °C
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IC Instrument: Dionex ICS-5000+ Capillary IC
Column: Dionex IonPac AG18-Fast/AS18-Fast,
0.4 mm i.d.
Column Temp: 40 °C
Eluent: Thermo Scientific Dionex EGC-KOH
(Capillary) Cartridge
Gradient: 40–50 mM KOH (0–5 min),
50–100 mM KOH (5–8 min),
100 mM KOH (8–14 min)
Flow Rate: 0.02 mL/min
Injection: 0.2 ng in 2 µL
MS Conditions: MSQ Plus MS, -ESI, SIM
Probe Temp: 300 oC
Needle Volt: 3.5 kV
Solvent: 20 µL/min acetonitrile
AN 1001, Thermo Fisher Scientific, 2012
Bisphosphonate Pharmaceuticals and Excipients by Cap IC-MS
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IC coupled with Triple Quadrupole MS (TSQ)
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TSQ Endura
Extreme Quantitative Value
• Best-in-class performance
• Unprecedented usability
• Exceptional robustness
Thermo Scientific TSQ Quantiva and Thermo Scientific TSQ Endura Mass Spectrometer Overview
TSQ Quantiva
Extreme Quantitative Performance
• Attogram sensitivity
• Unprecedented usability
• Exceptional robustness
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Occurrence of Disinfectant Treatment Byproducts
Chloral Hydrate 1.5%
Unknown Halogenated
Organics 62.4%
Haloacetonitrile 2.0%
Haloacetic Acids
13.0%
Cyanogen Chloride
1.0% Trihalomethane
20.1%
Haloacetic acids are formed when chlorine or other disinfectants react
with naturally occurring organic and inorganic matter in water
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Acid HAA Formula pKa
Monochloroacetic Acid MCAA* ClCH2CO2H 2.86
Dichloroacetic Acid DCAA * Cl2CHCO2H 1.25
Trichloroacetic Acid TCAA * Cl3CCO2H 0.63
Monobromoacetic Acid MBAA * BrCH2CO2H 2.87
Dibromoacetic Acid DBAA * Br2CHCO2H 1.47
Tribromoacetic Acid TBAA** Br3CCO2H 0.66
Bromochloroacetic Acid BCAA** BrClCHCO2H 1.39
Chlorodibromoacetic Acid CDBAA** Br2ClCCO2H 1.09
Bromodichloroacetic Acid BDCAA** Cl2ClCCO2H 1.09
Bromate -- BrO3-
Chlorite -- ClO2-
Chlorate -- Cl03-
Haloacetic acids (HAA5 and HAA9)
*HAA5; **HAA9
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Overlaid Chromatograms with Diversion Windows (Dionex ICS-5000+ System with TSQ Endura MS)
1 2 3
5
6
7
8
9 10
4
11
1. MCAA
10. DBCAA
9. DCBAA
4. Dalapon
3. Bromate 8. TCAA
7. DBAA
6. BCAA
5. DCAA
2. MBAA
11. TBAA
Conditions:
see AN 630
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Diverts to Waste, Eliminates Salts from Matrix
Cl- CO32-
SO42-
NO3-
Conditions:
see AN 630
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Analyte Calculated MDL
(ppb)
MCAA* (Monochloroacetic Acid) 0.105
MBAA* (Monobromoacetic Acid) 0.104
DCAA* (Dichloroacetic Acid) 0.044
DBAA* (Dibromoacetic Acid) 0.021
BCAA** (Bromochloroacetic Acid) 0.059
TCAA* (Trichloroacetic Acid) 0.033
BDCAA** (Bromodichloroacetic Acid 0.141
DBCAA** (Chlorodibromoacetic Acid) 0.214
TBAA** (Tribromoacetic Acid) 0.159
Dalapon 0.050
Bromate 0.059
Method Detection Limits for HAAs by TSQ Endura MS Using IC-MS-MS
*HAA5
** HAA9
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IC-MS vs. IC-MS-MS
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Analyte Regulated Limit
(µg/L)
IC-MSQ Plus
MS
(LOD, µg/L)
IC-TSQ Endura
MS
(LOD, µg/L)
IC-TSQ
Quantiva
MS
(LOD)
Perchlorate MCL < 1000 0.080–0.155 0.005 attograms
Halo Acetic
Acids
MCL: Total HAA5 < 60; MCAA < 70; TCAA < 20; DCAA : Not detected
~0.5–1 0.02–0.21 attograms
Acrylamide 50 µg/kg 0.2 Sub ppb to
single digit ppb attograms
Inorganic
anions /
cations
N/A 4–200
1–3
Sub ppb to
single digit ppb attograms
IC-MS vs. IC-MS-MS Results
Units are normalized to µg/L for clarification
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Summary
• IC-MS is recommended method for sensitive and selective
determinations of ions
• Aqueous samples can be directly injected into the IC system,
eliminating the need for derivitization with minimal sample
preparation
• IC-MS can be used to confirm the identity of small polar
molecules
• TSQ Endura and TSQ Quantiva (MS-MS) offer specificity and
sensitivity over single quadrupole methods (shown for HAAs
with ppt LODs)
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IC-MS Resources
• AN 151: Perchlorate in Environmental Waters Using IC-MS
• AN 243: Common Anions and Organic Acids Using IC-MS
• AN 269: ppb Levels of Common Cations and Amines by IC-MS
• AN 276: Fluoroacetate in Water by IC-MS
• AN 1000: Small Organic Acids in Sea Water by IC-MS
• AN 1001: Bisphosphonate Pharmaceuticals and Excipients by Capillary
IC-MS
• Wang, L.; Schnute, W. Capillary Ion Chromatography Mass Spectrometry:
Recent Advances in Instrumentation and Applications. Poster Note
111310, 2011.
• Chassaniol, K.; Brown, S; Wang, L.; Schnute, W. Specific and Selective
MS Detection for Environmental Analysis by Ion Chromatography. Poster
Note 110522, 2011.
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IC-MS-MS Resources
• Slingsby, R., et al. Dual-Selectivity IC-ESI-MS for the Separation and
Detection of Anionic and Cationic Arsenic Species. Am. Lab., May, 2007.
• Wang, L., Yang, C., Schnute, B. Quantitative IC-MS/MS Analysis of
Nitrogen Mustard Hydrolysis Products as Ethanolamines in Water
Samples. Poster Note 87121, 2010. (TSQ)
• AN 622: Pathway-Targeted Metabolomic Analysis in Oral/Head and Neck
Cancer Cells Using Ion Chromatography-Mass Spectrometry (Orbitrap)
• AN 630: EPA Method 557 – Analysis of Haloacetic Acids, Dalapon, and
Bromate in Drinking Water by IC-MS/MS (TSQ)
• AN 1088: Thiosulfate and Pyrophosphate in Crayfish Wash Powder
(TSQ)
• AN 1138: Untargeted Metabolic Profiling of Oral Cancer Cells Using
Capillary Ion Chromatography Coupled with High-Resolution, Accurate-
Mass Orbitrap MS
• Coming soon,… Polar Pesticides and Perchlorate
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Transform Your Science
Thank you!
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38
Other Applications
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Quantitative IC-MS/MS Analysis of Nitrogen Mustard Hydrolysis Products as Ethanolamines in Water
Columns: Dionex IonPac CG15/CS15 2 mm
Gradient (EG): 2 mM MSA (-4–8 min), 2–30 mM
(8–18 min), 30 mM (18–22 min)
Flow Rate: 0.40 mL/min
Suppressor: Thermo Scientific™ Dionex™
CSRS™ Cation Self Regenerating
Suppressor, external water mode
Inj. Vol.: 20 µL
Detection: A: Suppressed Conductivity,
B: Electrospray Mass Spectrometry
MS Conditions: TSQ Quantum Access MS, +ESI,
Makeup Solvent: IPA at 0.2 mL/min
Scan: SRM
Spray Voltage: 4K
Vaporization: 350 °C
Sheath/Aux Gas: 60 / 15 arbitrary units
Capillary Temp.: 300 °C
DEA: Diethylamine EDEA: N-Ethyldiethanolamine
EDA-IS: D8 internal standard TEA: Triethanolamine
MDEA: N-methyldiethanolamine
Analyte Rt Q1MS Q3 MS Collision
Energy
DEA 11.7 106.1 88.1 10
106.1 70.1 14
DEA-IS 11.7 114.1 96.1 11
114.1 78.1 14
MDEA 12.4 120.1 102.1 13
120.1 58.0 18
EDEA 12.8 134.1 116.0 13
134.1 72.0 18
TEA 12.4 150.1 132.0 12
150.1 88.0 17
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Thiosulfate and Pyrophosphate in Crayfish Wash Powder
Thiosulfate
Pyrophosphate
Columns: Dionex IonPac AG19/AS19, 2 mm
i.d.
Eluent (EG): KOH
Gradient: 6.5 mM KOH (0–15 min),
6.5–40 mM (15–30 min),
40–67 mM (30–37 min), 67 mM
(37-39 min), 6.5 mM (40-46 min)
Flow Rate: 0.25 mL/min
Temp: 30 °C
Suppressor: Thermo Scientific™ Dionex™
ASRS™ Anion Self Regenerating
Suppressor, external water mode
Inj. Vol.: 25 µL
Detection: 1-Suppressed conductivity,
2- Electrospray Mass Spectrometry
MS Conditions: Vantage TSQ MS, -ESI,
Spray Voltage: 3K
Vaporization: 350 °C
Sheath Gas: 40.0 bar
Ion Sweep Gas: 0 bar
Aux Gas: 5.0 bar
Collision Gas: 0 mTorr
Sample Prep.: 100 mg powder/100 mL DI, filter,
Dionex OnGuard RP, OnGuard Na
Sample: A: Wash Powder 1
C: Wash Powder 2