das implementations

Download DAS implementations

Post on 30-Dec-2015

32 views

Category:

Documents

0 download

Embed Size (px)

DESCRIPTION

DAS implementations. Bernat Gel. How do I DAS?. DAS enabled applications. Clients. Servers. DAS libraries. Servers. Clients. Java, Perl. Java, Perl, Javascript. Ensembl. http://www.ensembl.org/. Pfam. http://pfam.sanger.ac.uk/. Spice. http://www.dasregistry.org/spice/. Dasty. - PowerPoint PPT Presentation

TRANSCRIPT

  • 01/03/11DAS Implementations*How do I DAS?DAS enabled applicationsDAS libraries

    ClientsServersClientsServersJava, PerlJava, Perl, Javascript

    DAS Implementations

  • 01/03/11DAS Implementations*Ensemblhttp://www.ensembl.org/

    DAS Implementations

  • 01/03/11DAS Implementations*Pfamhttp://pfam.sanger.ac.uk/

    DAS Implementations

  • Spice01/03/11DAS Implementations*http://www.dasregistry.org/spice/

    DAS Implementations

  • 01/03/11DAS Implementations*Dastyhttp://www.ebi.ac.uk/dasty/

    DAS Implementations

  • 01/03/11DAS Implementations*Dalliancehttp://www.biodalliance.org/

    DAS Implementations

  • 01/03/11DAS Implementations*GBrowsehttp://gmod.org/wiki/Gbrowse

    DAS Implementations

  • And many more01/03/11DAS Implementations*JalviewIGBThe new EBI search

    DAS Implementations

  • 01/03/11DAS Implementations*Data Sources?

    DAS Implementations

  • 01/03/11DAS Implementations*DAS ServersMore than 750 DAS servers fom more than 50 organizationsEnsemblUniprotUCSCMany small groupsMost of them available at the DAS Registryhttp://www.dasregistry.org

    DAS Implementations

  • 01/03/11DAS Implementations*BioMartBioMarts are also DAS servershttp://www.biomart.org/

    DAS Implementations

  • 01/03/11DAS Implementations*What about MY data?

    DAS Implementations

  • 01/03/11DAS Implementations*easyDAShttp://www.ebi.ac.uk/panda-srv/easydas

    DAS Implementations

  • 01/03/11DAS Implementations*Libraries

    DAS Implementations

  • 01/03/11DAS Implementations*ClientsBio::DAS::LiteDASobertJDAShttp://search.cpan.org/~rpettett/Bio-Das-Lite/http://www.spice-3d.org/dasobert/index.jsphttp://code.google.com/p/jdas/ttp://code.google.com/p/jsdas/jsDAS

    DAS Implementations

  • 01/03/11DAS Implementations*ServersProServerMyDASDazzlehttp://sourceforge.net/projects/proserver/http://code.google.com/p/mydas/http://www.biojava.org/wiki/Dazzle

    DAS Implementations

  • 01/03/11DAS Implementations*Questions?

    DAS Implementations

    *************