cs262 discussion section 2. today’s agenda overview of some more biology underlying dna sequences....
Post on 19-Dec-2015
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Molecular scissors
Enzymes, naturally occurring in bacteria, that cut DNA at very specific places. e.g, BamHI cuts recognition sequence GGATCC
between GG. Another restriction enzyme will have a different
recognition sequence and will make its cuts between different pairs of bases.
Viruses: Making a living by hijacking cells
A virus is like a thief who arrives at a factory he intends to rob possessing only two things – the tools to get inside, and some software that will make the factory turn out items he can use.
T4 bacteriophage is a virus that looks like an
alien landing pod. With its six legs, the
bacteriophage attaches to the surface of the much
larger bacteria Escherichia coli (E. coli).
Once attached, the bacteriophage injects DNA into the bacterium. The DNA instructs the bacterium to produce masses of new viruses.
So many are produced, that the E. coli bursts.
Restriction-modification systems
A modification methyl-transferase that recognizes a specific DNA sequence, and methylates particular bases in that sequence.
A restriction endonuclease that recognizes the same sequence, and if the site is not methylated, cleaves the DNA.
Biotechnology
The use of living organisms to create products. Human Growth Hormone (HGH)
Secreted by pituitary gland A faulty pituitary gland can leave people abnormally
short. Previously, HGH was laboriously extracted from the
pituitaries of a dead human. Unsafe and produces too little HGH
Biotechnology: Produce synthetic HGH
Isolate gene for HGH from human cells and snip it out.
Insert into E.coli. E.coli will start transcribing and translating
the gene. Grow the bacteria in millions. Result: Biotech firms manufacture HGH and
ship to pharmacies worldwide.
How do you cut DNA to get a human gene out of the human genome? Use restriction enzymes.
How do you get this gene coding for protein inside a group of bacterial mini-factories?
Plasmids
Plasmids are extrachromosomal rings of bacterial DNA that can be as little as 1000 bp in length.
They can replicate independently of the bacterial chromosome, and they can move into bacterial cells.
Bacteria are capable of taking up DNA from their surroundings, after which this DNA will code for proteins inside the bacterial cell. (Transformation)
Definitions
Recombinant DNA: Two or more segments of DNA that have been combined by humans into a sequence that does not exist in nature.
Cloning: Making an exact genetic copy. A clone is one of the exact genetic copies.
Cloning vector: Self-replicating agents that serve as vehicles to transfer and replicate genetic material.
The wider world of biotechnology
Cloning can involve not just genes but whole organisms.
Humans have actually been making clones for centuries, eg, ‘cuttings’ taken from plants.
Biotechnology has expanded the range of what can be cloned.
Scotland, 1997
Dolly, the sheep, cloned by Ian Wilmut and colleagues.
Reproductive cloning: Cloning intended to produce genetically identical animals.