crucial role of the adhesion layer on the plasmonic

7
A Logical Design for DNA-Based Computation DNA has proven a useful structural component for a number of molecular devices, including those that perform information process- ing or programmed mechanical functions as a result of the ap- plication of external signals. Researcher teams have succeeded in developing simple computing devices, as well as a variety of DNA-based “machines” that perform pro- grammed mechanical operations, such as walkers, tweezers, gears, and more. An am- bitious aim is to combine the computational and mechanical functions of DNA-based devices to design modular and intercon- nected circuits. In a step toward this goal, Shlyahovsky et al. (p 1831) designed a series of logic gates that perform “AND”, “OR”, and “XOR” functions using a DNA scaffold of four strands. Two of the DNA strands recognize input and are blocked by comple- mentary nucleic acids, whereas the other two are output strands blocked by nucleic acids, including the horseradish peroxidase- mimicking DNAzyme sequence. Triggered by nucleic acid or low-molecular-weight in- puts, the device releases output strands that result in the formation of products with dif- fering absorption spectroscopy signals. Un- like previously designed DNA-based logic gates, input and output strands of these logic gates do not interact with each other, with inputs translating into me- diator nucleic acid strands that affect the generation of the output strands. In addition to computing applications, the authors propose that this novel design might find application in future nano- medicine technology as DNA-translator- based devices. For example, such a de- vice might eventually be designed to sense biomarkers for a certain disease, activating a translation process that re- leases predesigned nucleic acids that act either as antisense agents or as inhibi- tors for harmful enzymes. Boning Up on Collagen’s Piezoelectricity Many biological materialsOincluding bone, tendon, and dentinOdisplay piezoelectricity, allowing them to gener- ate an electrical charge in response to mechanical stress. Researchers have suggested that the origin of piezoelec- tricity in these materials could be indi- vidual collagen fibers of sizes below 100 nm; however, directly verifying this claim has been elusive since the effects from the collagen matrix composing these biological materials can be diffi- cult to tease out. Recently, Minary-Jolandan and Yu showed that a single isolated type I col- lagen fibril is predominantly a shear piezo- electric material. Extending these results in a new study (p 1859), the researchers probed electromechanical coupling prop- erties of collagen at different relevant lev- els of hierarchy, from the subfibrillar struc- ture of a single isolated collagen fibrial to the surface of a macroscopic-sized bone sample. Applying piezoresponse force microscopy to an individual type I col- lagen fibril less than 50 nm in diameter, the scientists show that the fibril is highly heterogeneous along its axial direction in its electromechanical property at the nanoscale, coinciding with the periodic variation of the fibril’s gap and overlap re- gions. Their investigation of bone revealed that this heterogeneity persists in embed- ded collagen fibrils. The authors suggest that their findings may help explain the structural formation and remodeling of bone, with this piezoelectric heterogene- ity leading to uneven distribution of elec- tric charges in collagen fibrils under me- chanical stimulation. Consequently, these charges may influence the local ionic envi- ronments as well as affect the binding af- finities of the related biomolecules and ions responsible for bone growth and remodeling. Plasmonic Nanoantennas: Tuning in on the Adhesion Layer An increasing amount of attention has been focused on plasmonic nanoan- tennas for applications ranging from nanophotonics to enhanced light emis- sion to molecular sensing. Since these components are typically fabricated from gold, they require an adhesion layer commonly fabricated from chro- mium or titanium to ensure firm contact between the gold film and the sub- strate. The influence of this adhesion layer in the performance of nanoanten- nas has not been well-characterized in previous studies. Consequently, whether a specific adhesion layer composition might improve or diminish performance was unknown. Seeking to evaluate the influence of the adhesion layer on device perfor- mance, Aouani et al. (p 2043) took ad- vantage of techniques they recently de- veloped to characterize the fluorescence emission within single nanometer-sized apertures milled in gold films. In a new study, the team studied 120 nm aper- tures milled in a 200 nm thick gold film with several different adhesion layers: 5 nm of chromium or titanium, 10 nm of titanium, and 10 nm of titanium oxide (TiO 2 ) or chromium oxide (Cr 2 O 3 ). Using a combination of fluorescence correla- tion spectroscopy with fluorescence time-correlated lifetime measurements to determine the fluorescence emission of diffusing dye molecules, the research- ers show that the plasmonic properties of the structure are affected dramatically by the adhesion layer’s properties. Specifically, they found a striking 25- fold fluorescence enhancement for a 10 nm TiO 2 layer, more than 3 higher than the enhancement found for a 10 nm Ti layer. The authors note that these data strongly support careful consideration of the adhesion layer when designing nanoantennas for high-efficiency single- molecule analysis and indicate that 10 nm TiO 2 may be the optimal choice based upon their results. Published online July 28, 2009. 10.1021/nn900692g CCC: $40.75 © 2009 American Chemical Society IN NANO www.acsnano.org VOL. 3 NO. 7 1605 2009 1605 Downloaded by INIST TITAN SCIENCES on July 28, 2009 Published on July 28, 2009 on http://pubs.acs.org | doi: 10.1021/nn900692g

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Page 1: Crucial Role of the Adhesion Layer on the Plasmonic

A Logical Design for DNA-Based ComputationDNA has proven a

useful structuralcomponent for anumber of moleculardevices, includingthose that performinformation process-ing or programmedmechanical functionsas a result of the ap-plication of externalsignals. Researcherteams have succeeded in developing simplecomputing devices, as well as a variety ofDNA-based “machines” that perform pro-grammed mechanical operations, such aswalkers, tweezers, gears, and more. An am-bitious aim is to combine the computationaland mechanical functions of DNA-based

devices to designmodular and intercon-nected circuits.

In a step towardthis goal, Shlyahovskyet al. (p 1831) designeda series of logic gatesthat perform “AND”,“OR”, and “XOR”functions using a DNAscaffold of four strands.Two of the DNA strands

recognize input and are blocked by comple-mentary nucleic acids, whereas the othertwo are output strands blocked by nucleicacids, including the horseradish peroxidase-mimicking DNAzyme sequence. Triggeredby nucleic acid or low-molecular-weight in-puts, the device releases output strands that

result in the formation of products with dif-fering absorption spectroscopy signals. Un-like previously designed DNA-based logicgates, input and output strands of theselogic gates do not interact with eachother, with inputs translating into me-diator nucleic acid strands that affectthe generation of the output strands. Inaddition to computing applications, theauthors propose that this novel designmight find application in future nano-medicine technology as DNA-translator-based devices. For example, such a de-vice might eventually be designed tosense biomarkers for a certain disease,activating a translation process that re-leases predesigned nucleic acids that acteither as antisense agents or as inhibi-tors for harmful enzymes.

Boning Up on Collagen’s PiezoelectricityMany biological materialsOincluding

bone, tendon, and dentinOdisplaypiezoelectricity, allowing them to gener-ate an electrical charge in response tomechanical stress. Researchers havesuggested that the origin of piezoelec-tricity in these materials could be indi-vidual collagen fibers of sizes below 100nm; however, directly verifying thisclaim has been elusive since the effectsfrom the collagen matrix composingthese biological materials can be diffi-cult to tease out.

Recently, Minary-Jolandan and Yushowed that a single isolated type I col-lagen fibril is predominantly a shear piezo-electric material. Extending these results

in a new study (p 1859), the researchersprobed electromechanical coupling prop-erties of collagen at different relevant lev-els of hierarchy, from the subfibrillar struc-ture of a single isolated collagen fibrial tothe surface of a macroscopic-sized bonesample. Applying piezoresponse forcemicroscopy to an individual type I col-lagen fibril less than 50 nm in diameter,the scientists show that the fibril is highlyheterogeneous along its axial direction inits electromechanical property at thenanoscale, coinciding with the periodicvariation of the fibril’s gap and overlap re-gions. Their investigation of bone revealedthat this heterogeneity persists in embed-ded collagen fibrils. The authors suggestthat their findings may help explain the

structural formation and remodeling ofbone, with this piezoelectric heterogene-ity leading to uneven distribution of elec-tric charges in collagen fibrils under me-chanical stimulation. Consequently, thesecharges may influence the local ionic envi-ronments as well as affect the binding af-finities of the related biomolecules andions responsible for bone growth andremodeling.

Plasmonic Nanoantennas: Tuning in on the Adhesion LayerAn increasing amount of attention

has been focused on plasmonic nanoan-tennas for applications ranging fromnanophotonics to enhanced light emis-sion to molecular sensing. Since thesecomponents are typically fabricatedfrom gold, they require an adhesionlayer commonly fabricated from chro-mium or titanium to ensure firm contactbetween the gold film and the sub-strate. The influence of this adhesionlayer in the performance of nanoanten-nas has not been well-characterized inprevious studies. Consequently, whether

a specific adhesion layer compositionmight improve or diminish performancewas unknown.

Seeking to evaluate the influence ofthe adhesion layer on device perfor-mance, Aouani et al. (p 2043) took ad-vantage of techniques they recently de-veloped to characterize the fluorescenceemission within single nanometer-sizedapertures milled in gold films. In a newstudy, the team studied 120 nm aper-tures milled in a 200 nm thick gold filmwith several different adhesion layers: 5nm of chromium or titanium, 10 nm oftitanium, and 10 nm of titanium oxide

(TiO2) or chromium oxide (Cr2O3). Usinga combination of fluorescence correla-tion spectroscopy with fluorescencetime-correlated lifetime measurementsto determine the fluorescence emissionof diffusing dye molecules, the research-ers show that the plasmonic propertiesof the structure are affected dramaticallyby the adhesion layer’s properties.Specifically, they found a striking 25-fold fluorescence enhancement for a 10nm TiO2 layer, more than 3� higher thanthe enhancement found for a 10 nm Tilayer. The authors note that these datastrongly support careful considerationof the adhesion layer when designingnanoantennas for high-efficiency single-molecule analysis and indicate that 10nm TiO2 may be the optimal choicebased upon their results.

Published online July 28, 2009.10.1021/nn900692g CCC: $40.75

© 2009 American Chemical Society

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Crucial Role of the Adhesion Layer onthe Plasmonic FluorescenceEnhancementHeykel Aouani,† Jerome Wenger,†,* Davy Gerard,†,� Herve Rigneault,† Eloıse Devaux,‡ Thomas W. Ebbesen,‡

Farhad Mahdavi,§ Tingjun Xu,§ and Steve Blair§

†Institut Fresnel, Aix-Marseille Universite, CNRS, Ecole Centrale Marseille, Campus de St. Jerome, 13397 Marseille, France, ‡Institut de Science et d’IngenierieSupramoleculaires, Universite Louis Pasteur, CNRS, 8 allee G. Monge, 67000 Strasbourg, France, and §Electrical and Computer Engineering Department, University ofUtah, 50 South Central Campus Drive, Rm. 3280, Salt Lake City, Utah 84112. �Current address: LNIO, Institut Charles Delaunay, Universite de Technologie de Troyes,France.

Plasmonic nanoantennas have gainedgreat interest in recent years for ap-plications in nanophotonics,1�3 en-

hanced light emission,4�6 and molecularsensing.7�9 Comprehensive theoretical andexperimental studies have been performedto characterize antennas made of coupledmetallic nanoparticles in a large variety ofshapes and geometries.10�14 While gold iswidely used to fabricate these plasmoniccomponents, a supplementary adhesionlayer (generally made of chromium or tita-nium) is needed to ensure firm contact be-tween the gold film and the substrate. How-ever, detailed understanding is still lackingregarding the role of this adhesion layer onthe plasmonic resonances. It has been ex-perimentally observed that a thin interme-diate chromium or titanium layer shifts andbroadens the surface plasmon resonance inthe case of a flat interface15�17 or of goldnanodiscs.18 The magnitude of the reso-nance has also been found to decreasewhen the thickness of the adhesion layer in-creases. The case of resonant bowtienanoantennas has been recently numeri-cally modeled.19 It was found that the influ-ence of adhesion layers lies on the complexdielectric constant of the material. For di-electric adhesion layers, the influence of therefractive index causes the plasmonic reso-nance to red shift and decrease in strength.It was also found to modify the field local-ization within the nanoantenna by pushingthe high-intensity region to the top of thestructure when illuminated from below. Formetal adhesion layers, the intrinsic absorp-tion quenches the resonance at the bottomof the structure, while causing the reso-nances within the gap to red shift from top

to bottom. Adhesion layer engineering canthus be used to optimize the near-field lo-calization inside the antenna.

To bridge the gap between numericalmodeling and experimental observationsof the influence of adhesion layers in plas-monics, we take advantage of the tech-niques recently developed by our team tocharacterize the fluorescence emissionwithin single nanometric apertures milledin a gold film (Figure 1). The nanoaperturestructure offers a reliable test bench forsuch studies,20,21 as it can be reproduciblyfabricated with robust techniques, and ithas been proven to be a sensitive platformto study enhanced fluorescence emission ofsingle molecules.22,23 To investigate the in-fluence of the adhesion layer, we focus hereon 120 nm diameter apertures milled in a200 nm thick gold film with different

*Address correspondence [email protected].

Received for review May 6, 2009and accepted June 06, 2009.

Published online June 11, 2009.10.1021/nn900460t CCC: $40.75

© 2009 American Chemical Society

ABSTRACT A nanoscale layer of chromium or titanium is commonly used in plasmonic nanoantennas to

firmly adhere a gold film to a glass substrate, yet the influence of this layer on the antenna performance is often

ignored. As a result, the need for the use of potentially better materials is not widely recognized. Using a single

aperture milled in a gold film with 120 nm diameter as a nanobench for these investigations, we present the first

experimental report of the strong dependence of the plasmonic enhancement of single-molecule fluorescence on

the nature of the adhesion layer. By combining fluorescence correlation spectroscopy and fluorescence lifetime

measurements, we show that this structure is very sensitive to the properties of the adhesion layer, and we detail

the respective contributions of excitation and emission gains to the observed enhanced fluorescence. Any increase

in the absorption losses due to the adhesion layer permittivity or thickness is shown to lower the gains in both

excitation and emission, which we relate to a damping of the energy coupling at the nanoaperture. With this

nanobench, we demonstrate the largest enhancement factor reported to date (25�) by using a TiO2 adhesion

layer. The experimental data are supported by numerical simulations and argue for a careful consideration of the

adhesion layer while designing nanoantennas for high-efficiency single-molecule analysis.

KEYWORDS: plasmonics · nanoantennas · metal nanoapertures · fluorescenceenhancement · fluorescence correlation spectroscopy · nanofabrication

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adhesion layers: 5 nm of chromium or titanium, 10 nm

of titanium, and 10 nm of titanium oxide (TiO2) or chro-

mium oxide (Cr2O3). Other configurations were also

tested, yet to maintain the readability of our results,

we select only these five cases as the most insightful.

The aperture diameter is chosen to yield the maximum

fluorescence enhancement at 633 nm excitation, as al-

ready reported.22,23 For each sample, the fluorescence

emission of Alexa Fluor 647 molecules diffusing within

the structure is characterized according to the proce-

dure developed in ref 23. This method relies on a com-

bination of fluorescence correlation spectroscopy (FCS)

with fluorescence time-correlated lifetime measure-

ments. It specifically allows one to detail the influence

of the nanostructure on the molecular emission and

quantifies the respective weights of excitation and

emission contributions to the observed enhanced

fluorescence.

RESULTSWe start by performing a set of FCS measurements

while increasing the excitation power from 10 to 400

�W (the upper limit was set to avoid damaging the

sample and photobleaching the dyes). Each FCS corre-

lation function is analyzed to reliably measure the fluo-

rescence count rate per molecule, CRM (see Methods

section). For each excitation power, special care is taken

to characterize the level of background noise and the

dark state amplitude. Results are summarized in Figure

2a, in the case of an open solution and in the case of

120 nm apertures with different adhesion layers. It is ap-

parent from this raw data that the nature of the adhe-

sion layer has a dramatic impact on the fluorescence

emission. To make this effect appear even clearer, we

model this data with the expression of the fluorescence

rate given by CRM � A(Ie)/(1 � Ie/Is), where Ie is the ex-

citation intensity, Is the saturation intensity, and A is a

constant proportional to the molecular absorption cross

section, quantum yield, and setup collection effi-

ciency.24 The fitting parameters are summarized in

Table 1 and are used hereafter to compare the differ-

ent adhesion layers.

Figure 2b displays the fluorescence rate enhance-

ment for the different adhesion layers found in the re-

gime below saturation. This factor is defined as the ra-

tio of the detected fluorescence rate per molecule in

Figure 1. (a) Schematics of the experimental configuration. (b) Scan-ning electron microscope view along the side of the sample. Thesample has been cut with FIB and is strongly tilted to show the stackof layers. The dark region indicated by the white arrow correspondsto the adhesion layer. (c) Atomic force microscopy view of the uppersurface of the gold film. The rms roughness in the area indicated bythe square is measured to 1.5 nm.

Figure 2. (a) Count rate per molecule versus the excitationpower within a single 120 nm aperture with different adhe-sion layers. Markers are experimental data, solid lines are nu-merical fits (see text). Fitting parameters are summarized inTable 1. (b) Fluorescence rate enhancement in the regimebelow saturation deduced from the numerical fits in (a).

TABLE 1. Refractive Index (n) and Extinction Coefficient (k)of the Different Materials Used Here at 633 nmWavelength, Taken from Ref 19a

material Cr Ti Ti TiO2 Cr2O3 sol

thickness (nm) 5 5 10 10 10n 3.54 2.15 2.15 1.97 2.45k 4.36 2.92 2.92 0 0.54A (kHz/�W) 1.6 3.2 1.4 5.1 4.6 0.2Is (�W) 480 320 600 280 270 435� (ns) 0.41 0.40 0.36 0.40 0.40 0.88

aThe table also presents the fitting parameters A, Is for the experimental data inFigure 2a and the fluorescence lifetime � in Figure 3a.

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the aperture with respect to the CRM in open solution

taken at the limit of low excitation Ie ¡ 0. Practically, it

corresponds to the ratio of the A parameters derived

from the interpolation of the data curves in Figure 2a,

which are given in Table 1.

A striking 25-fold fluorescence enhancement is

found for a 10 nm TiO2 layer and is the highest gain re-

ported to date for Alexa Fluor 647 molecules in a

nanoaperture. This value has to be compared to the

7.2 enhancement found instead for a 10 nm Ti layer. Al-

though the same preparation procedures and experi-

mental setup are used, the net difference between the

fluorescence signal per emitter can be as large as 3.5-

fold. At least seven different apertures are tested for

each adhesion layer, with variation in fluorescence

count rate between 6 and 8%, which takes into ac-

count effects such as dispersion in aperture diameter.

The error bars displayed in Figure 2b indicate the stan-

dard deviations of our measurements.

Metallic adhesion layers, such as Cr and Ti, are

shown to yield lower overall fluorescence enhance-

ments and greater saturation intensities than dielectric

layers. This can be understood as a stronger damping of

the plasmonic resonance due to an increased absorp-

tion in the adhesion layer and corroborates the conclu-

sions drawn in ref 19. The negative effect of losses isconfirmed by the lower enhancement found for chro-mium compared to that for titanium at a fixed thickness(chromium’s absorption is about three times that of ti-tanium at 633 nm; see Table 1) and by the fact that thefluorescence enhancement increases when the adhe-sion layer thickness decreases. Last, the damping effectof absorption is also exhibited for dielectrics, with ahigher enhancement for titanium oxide (which showsnegligible absorption in the visible range) than for chro-mium oxide (which has some residual absorption at633 nm). Almost every experimental study of plasmonicnanoantennas skips the issue of the adhesion layerchoice and design, while we clearly show here that ithas a dramatic influence.

To complete the FCS measurements and fully char-acterize the fluorescence enhancement phenomenon,we conduct time-correlated single photon counting(TCSPC) experiments to monitor the fluorescence life-time alteration inside the nanoapertures. These experi-ments are performed for the same nanoaperturesample and the Alexa Fluor 647 solution. Figure 3ashows the fluorescence decay curves for molecules inopen solution and in single 120 nm apertures with 10nm Ti or TiO2 adhesion layer. The other adhesion layersused in this study resulted in traces nearly identical tothe one of the TiO2 case and are not represented to easeviewing the graphs. The fluorescence decay rate is mea-sured by fitting the data using a single exponential de-cay model convolved by the calibrated instrument re-sponse function.23 This yields the fluorescence lifetimereduction normalized to the open solution case dis-played in Figure 3b. Interestingly, this factor appears al-most independent of the adhesion layer, showing thatthe near-field molecular decay routes in the nanoaper-ture are dominated by the gold structure, not by the ad-hesion layer. However, the coupling of the fluores-cence radiation to the far-field is affected by theadhesion layer, as shown on Figure 2 and discussedhereafter.

DISCUSSIONDifferent effects can lead to an enhancement of

the fluorescence signal of a single molecule: (i) lo-cal increase in the excitation intensity, (ii) increasesin the emitter’s radiative rate and quantum effi-ciency, and (iii) modification of the emitter’s radia-tion pattern, giving a higher emission directionalitytoward the detectors. Determining the relative influ-ence of these effects is a delicate task, which canbe addressed by combining FCS with fluorescencelifetime measurements. As discussed in the Methodssection, the gain in emission, �em, is derived fromthe value of the fluorescence enhancement in thesaturation regime, which we obtain from the asymp-totic interpolation of the data points in Figure 2a atthe limit where Ie ¡ �. The gain in excitation inten-

Figure 3. (a) Normalized fluorescence decay traces mea-sured in open solution (black dots) and in single 120 nm ap-ertures with 10 nm Ti or TiO2 adhesion layer. Dots are experi-mental data, lines are numerical fits. The other adhesionlayers used in this study resulted in traces almost identicalto the one of the TiO2 case; they are therefore not repre-sented here to maintain clarity. (b) Fluorescence lifetime re-duction as compared to molecules in open solution for thedifferent adhesion layers.

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sity, �exc, equals the fluorescence enhancement inthe low excitation regime divided by the ratio of theemission gain by the total decay rate alteration:�exc � �F/(�em/�tot).

This procedure yields the experimental estimatesof the excitation and emission gains for the differ-ent adhesion layers displayed in Figure 4. The gainin excitation intensity can be understood as a bet-ter coupling of energy inside the nanostructure,while the gain in emission has to be related to a bet-ter outcoupling of the energy stored in the dipole’snear-field to the detected far-field radiation. Due tothe small Stokes shift between the excitation andemission wavelengths of Alexa Fluor 647, the reci-procity theorem holds and, consequently, both exci-tation and emission phenomena influence the over-all gain in fluorescence and show strong variationswith the nature of the adhesion layer used. Absorp-tion in metallic adhesion layers yields lower gainsthan dielectric layers for both excitation and emis-sion. These data confirm that any increase in absorp-tion losses due to the material’s properties or an in-creased thickness results in a damping of the near-to far-field coupling at the nanoaperture.

To supplement this experimental evidence, weconduct a numerical analysis based on the finite el-ement method (see Methods section). This methodallows one to separately compute the enhancementsin excitation intensity and emission rate, which bothcontribute to the overall gain in the fluorescence sig-nal. The increase of the excitation intensity insidethe aperture is computed from the average inten-

sity measured with and without the nanostructure

at a plane located 20 nm inside the aperture. For the

emission calculations, we compute the radiative

emission through the glass side by integrating the

z-component of Poynting’s vector across a plane lo-

cated 20 nm below the metal surface for single di-

poles located in different positions and orientations

inside the aperture (see Methods section). Results of

numerical simulations for excitation and emission

are displayed in Figure 4 for the different adhesion

layers (empty markers). They are remarkably consis-

tent with the experimental data and confirm the cru-

cial influence of the adhesion layer on both excita-

tion and emission gains in the nanostructure.

Interestingly, this method allows one to predict the

maximum fluorescence enhancement for gold only

with no adhesion layer. We obtain an optimum fluo-

rescence enhancement of 28 for Alexa Fluor 647

molecules, which is about 10% higher than with the

10 nm TiO2 layer. This confirms that titanium oxide

is the material of choice for practical plasmonic en-

hancement applications.

CONCLUSIONSWe experimentally and numerically study the in-

fluence of the adhesion layer commonly used to en-

sure firm contact between a gold film and underly-

ing glass substrate in plasmonic nanoantennas. A

single aperture milled in the metal film with 120 nm

diameter forms a reliable structure to investigate

the effects of the adhesion layer on the fluorescence

enhancement of single molecules. Although the

same preparation procedures and experimental

setup are used, we show that the nature of the ad-

hesion layer (permittivity and thickness) has a dra-

matic impact on the fluorescence signal per mol-

ecule with a difference up to a factor of 4. By

combining FCS and fluorescence lifetime measure-

ments, we detail the respective contributions of ex-

citation and emission gains to the observed en-

hanced fluorescence. Any increase in the absorption

losses due to the adhesion layer material’s proper-

ties or increased thickness is shown to yield lower

enhancements, which we relate to a damping of the

near- to far-field coupling at the nanoaperture. The

experimental data are sustained by numerical simu-

lations using finite element method. To our knowl-

edge, this is the first experimental report of the

strong dependence of the fluorescence gain on the

nature of the adhesion layer. Clearly, one has to con-

sider the role of the adhesion layer while designing

nanoantennas for high-efficiency single-molecule

analysis based on either fluorescence or Raman scat-

tering, 10 nm of titanium oxide being the optimal

choice based upon our study.

Figure 4. Contributions of excitation (a) and emission gains(b) to the fluorescence enhancement found for different ad-hesion layers. Bars are experimental data, empty circles arefor numerical computations.

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METHODSNanoaperture Fabrication. All metal and dielectric films are de-

posited using reactive DC magnetron sputtering in the samechamber. The gold film thickness of 200 nm was chosen to beoptically opaque and isolate the molecules diffusing in the aper-ture from the pool of molecules lying above the structure. Adhe-sion between the gold film and the 150 �m thick glass sub-strate is ensured by a layer of 5 nm of chromium or titanium, 10nm of titanium, or 10 nm of titanium oxide (TiO2) or chromiumoxide (Cr2O3). The oxides’ adhesion layers are deposited usingthe same metal targets, but under partial oxygen pressure. Thick-ness control is maintained by a cluster of piezoelectric moni-tors. We relied on calibration of the deposition process usingquartz crystal monitors and test samples. Therefore, we estimateno more than 20% error in the adhesion layer thickness. Similaradhesion properties were found for these different layers. Last,circular apertures of 120 nm diameter are milled by focused ionbeam (FEI Strata DB235). We checked that the metal film rough-ness remained similar for all adhesion layers used. Figure 1c pre-sents a typical AFM image of the upper gold surface, where theroughness was measured to 1.5 nm.

Fluorescence Count Rate per Molecule Calibration. In order to get anaccurate understanding of the fluorescence emission in thenanostructure and investigate the influence of the adhesionlayer, it is crucial to quantify the fluorescence count rate per mol-ecule CRM, which requires the knowledge of the actual numberof emitters, N, contributing to the global fluorescence signal. Thisissue is addressed via fluorescence correlation spectroscopy(FCS).24 In FCS, the temporal fluctuations, F(t), of the fluores-cence signal are recorded, and the temporal correlation of thissignal is computed g(2)(�) � �F(t) F(t � �)/�F(t)2, where � is thedelay (lag) time, and � is for time averaging. Analysis of the cor-relation function provides a measure for the number of mol-ecules, N, needed to compute the count rate per molecule CRM� �F/N.22,23 We point out that, as a consequence of the stochas-tic nature of the FCS technique, all the presented fluorescencedata are spatially averaged over all the possible molecule orien-tations and positions inside the detection volume.

Excitation and Emission Gains Characterization. To unravel the ori-gins of the fluorescence enhancement near a photonic struc-ture, we have developed a specific experimental procedurewhich has already been applied to the case of fluorescence alter-ation by gold nanometric apertures.23 This procedure can besummarized as follows: the fluorescence rates per molecule CRMare measured for increasing excitation powers in open solutionand in the case of a nanoaperture. The resulting data points arefitted according to the model CRM � A(Ie)/(1 � Ie/Is), where Ie isthe excitation intensity, Is the saturation intensity, and A is a con-stant proportional to the molecular absorption cross section,quantum yield, and setup collection efficiency.24 We deducefrom the fits the fluorescence enhancements at the two ex-treme cases below saturation Ie �� Is and at saturation Ie �� Is.In the saturation regime, the fluorescence rate enhancement isdetermined only by the gain in emission, �em. In the low excita-tion regime, Ie �� Is, the fluorescence enhancement, �F, is pro-portional to the gains in emission, �em, and local excitation inten-sity, �exc, and inversely proportional to the gain in totalfluorescence decay rate, �tot: �F � �em�exc/�tot. Using supplemen-tary fluorescence lifetime measurements to determine the alter-ation in the total fluorescence decay rate, �tot, it is therefore pos-sible to extract the gain in local excitation intensity from thefluorescence enhancement in the low excitation regime. This un-ambiguously separates the excitation and emission contribu-tions to the total fluorescence enhancement and is used hereto investigate the influence of the adhesion layer on the fluores-cence enhancement in single nanoapertures.

Experimental Setup. A comprehensive description of our experi-mental setup has been presented before.23 Briefly, it is basedon a confocal inverted microscope with a NA � 1.2 water-immersion objective, allowing single aperture studies (Figure1a). For all experiments reported here, we use an aqueous solu-tion of Alexa Fluor 647 fluorescent molecules (A647, Invitrogen,Carlsbad, CA) deposited on top of the sample with micromolarconcentration. These molecules are constantly diffusing in andout of the aperture, thereby limiting photobleaching. For FCS

measurements, the excitation source is a CW He�Ne laser oper-ating at 633 nm. For lifetime measurements, the excitationsource is a picosecond laser diode operating at 636 nm (Pico-Quant LDH-P-635). A single-mode optical fiber ensures a per-fect spatial overlap between the pulsed laser diode and the CWlaser. Accurate positioning of the nanoaperture at the laser focusspot is obtained with a multiaxis piezoelectric stage. Single pho-ton detection is performed by avalanche photodiodes with 670 20 nm fluorescence band-pass filters. For FCS, the fluores-cence intensity temporal fluctuations are analyzed with aALV6000 hardware correlator. Each individual FCS measure-ment is obtained by averaging 10 runs of 10 s duration. For fluo-rescence lifetime measurements, the photodiode output iscoupled to a fast time-correlated single photon counting mod-ule (PicoQuant PicoHarp 300).

Numerical Simulations. Numerical analysis is based on the finiteelement method using COMSOL Multiphysics version 3.3.25 Themodel considers a computational space of 1.0 1.0 1.1 �m3,with radiation boundary conditions on all faces. A glass substrateis put underneath a 200 nm thick layer of gold plus a 5 or 10nm adhesion layer, the upper region being water. Gold dielec-tric properties are incorporated as measured by spectroscopicellipsometry.19,25 A single 120 nm aperture is placed in the cen-ter of the metal. To estimate the increase of the excitation inten-sity inside the aperture, a plane wave at 633 nm is launched in-coming from the glass side. Electromagnetic intensity ismeasured and averaged over the plane 20 nm inside the aper-ture. This result is then normalized by the integrated intensitywith no metal layer. For the emission calculations, a 1 nm dipoleis positioned at various locations inside the aperture. Eleven hori-zontal planes 20 nm apart are considered in the aperture, thevery first and very last planes being 5 nm inside the structure.In each horizontal plane, 37 dipole positions are taken. At eachpoint, a dipole emitting at 670 nm is aligned along X, Y, and Z di-rections. The radiative emission through the glass side is esti-mated by integrating the z-component of Poynting’s vectoracross a plane located 20 nm below the metal surface. This aver-aged power is then scaled by a fixed normalization factor to fitthe experimental emission gain for the chromium adhesionlayer.

Acknowledgment. The authors acknowledge stimulating dis-cussions with N. Bonod and E. Popov. This work has been fundedby the French Agence Nationale de la Recherche under con-tract ANR-07-NANO-006-03 “ANTARES” and the U.S. National Sci-ence Foundation Grants ECS-0622225 and ECS-0637121.

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