chapter 5 the working cell - north hunterdon-voorhees ... · allowing some substances to cross more...

© 2012 Pearson Education, Inc. Lecture by Edward J. Zalisko

PowerPoint Lectures for

Campbell Biology: Concepts & Connections, Seventh Edition

Reece, Taylor, Simon, and Dickey

Chapter 5 The Working Cell

Lesson Plans

Flipped Classroom

HW Day 1Notes outline section 5.1-5.4, review

notes, watch examples, do problems in packet

HW Day 2 Notes 5.5-5.10, Review notes, watch

examples, do problems in packet

HW Day 3 Notes finish chapter, Review notes, watch

examples, do problems in packet

Introduction

Some organisms use energy-converting reactions to

produce light in a process called bioluminescence.

– Many marine invertebrates and fishes use

bioluminescence to hide themselves from predators.

– Scientists estimate that 90% of deep-sea marine life

produces bioluminescence.

The light is produced from chemical reactions that

convert chemical energy into visible light.

© 2012 Pearson Education, Inc.

Figure 5.0_1

Chapter 5: Big Ideas

Membrane Structure

and Function

Energy and the Cell

How Enzymes Function

Cellular respiration

Figure 5.0_2

Introduction

Bioluminescence is an example of the multitude of

energy conversions that a cell can perform.

Many of a cell’s reactions

– take place in organelles and

– use enzymes embedded in the membranes of these

organelles.

This chapter addresses how working cells use

membranes, energy, and enzymes.


MEMBRANE STRUCTURE

AND FUNCTION


5.1 Membranes are fluid mosaics of lipids and proteins with many functions

Membranes are composed of

– a bilayer of phospholipids with

– embedded and attached proteins,

– in a structure biologists call a fluid mosaic.



Many phospholipids are made from unsaturated

fatty acids that have kinks in their tails.

These kinks prevent phospholipids from packing

tightly together, keeping them in liquid form.

In animal cell membranes, cholesterol helps

– stabilize membranes at warmer temperatures and

– keep the membrane fluid at lower temperatures.


Figure 5.1

Fibers of

extracellular

matrix (ECM)

Enzymatic

activity

Phospholipid

Cholesterol

CYTOPLASM

CYTOPLASM

Cell-cell

recognition

Glycoprotein

Intercellular

junctions

Microfilaments

of cytoskeleton

ATP Transport

Signal

transduction

Receptor

Signaling

molecule

Attachment to the cytoskeleton

and extracellular matrix (ECM)


Membrane proteins perform many functions.

1. Some proteins help maintain cell shape and coordinate

changes inside and outside the cell through their

attachment to the cytoskeleton and extracellular matrix.

2. Some proteins function as receptors for chemical

messengers from other cells.

3. Some membrane proteins function as enzymes.


Animation: Signal Transduction Pathways


4. Some membrane glycoproteins are involved in cell-cell

recognition.

5. Membrane proteins may participate in the intercellular

junctions that attach adjacent cells to each other.

6. Membranes may exhibit selective permeability,

allowing some substances to cross more easily than

others.


05_01SignalTransduction_A.html

5.2 EVOLUTION CONNECTION: Membranes form spontaneously, a critical step in the origin of life

Phospholipids, the key ingredient of biological

membranes, spontaneously self-assemble into

simple membranes.

The formation of membrane-enclosed collections of

molecules was a critical step in the evolution of the

first cells.


Figure 5.2

Water-filled bubble made of phospholipids

Figure 5.2Q

Water

Water

5.3 Passive transport is diffusion across a membrane with no energy investment

Diffusion is the tendency of particles to spread out

evenly in an available space.

– Particles move from an area of more concentrated

particles to an area where they are less concentrated.

– This means that particles diffuse down their

concentration gradient.

– Eventually, the particles reach equilibrium where the

concentration of particles is the same throughout.


5.3 Passive transport is diffusion across a membrane with no energy investment

Diffusion across a cell membrane does not require energy, so it is called passive transport.

The concentration gradient itself represents potential energy for diffusion.


Animation: Membrane Selectivity

Animation: Diffusion

05_03MembraneSelectivity_A.html

05_03Diffusion_A.html

Figure 5.3A

Molecules of dye Membrane

Pores

Net diffusion Net diffusion Equilibrium

Figure 5.3B

Net diffusion Net diffusion

Net diffusion Net diffusion

Equilibrium

Equilibrium

5.4 Osmosis is the diffusion of water across a membrane

One of the most important substances that crosses

membranes is water.

The diffusion of water across a selectively

permeable membrane is called osmosis.


Animation: Osmosis

05_04Osmosis_A.html

5.4 Osmosis is the diffusion of water across a membrane

If a membrane permeable to water but not a solute

separates two solutions with different

concentrations of solute,

– water will cross the membrane,

– moving down its own concentration gradient,

– until the solute concentration on both sides is equal.


Figure 5.4

Osmosis

Solute molecule

with cluster of

water molecules

Water

molecule

Selectively

permeable

membrane

Solute

molecule

H2O

Lower

concentration

of solute

Higher

concentration

of solute

Equal

concentrations

of solute

5.5 Water balance between cells and their surroundings is crucial to organisms

Tonicity is a term that describes the ability of a

solution to cause a cell to gain or lose water.

Tonicity mostly depends on the concentration of a

solute on both sides of the membrane.



How will animal cells be affected when placed into solutions of various tonicities? When an animal cell is placed into

– an isotonic solution, the concentration of solute is the same on both sides of a membrane, and the cell volume will not change,

– a hypotonic solution, the solute concentration is lower outside the cell, water molecules move into the cell, and the cell will expand and may burst, or

– a hypertonic solution, the solute concentration is higher outside the cell, water molecules move out of the cell, and the cell will shrink.



For an animal cell to survive in a hypotonic or

hypertonic environment, it must engage in

osmoregulation, the control of water balance.



The cell walls of plant cells, prokaryotes, and fungi

make water balance issues somewhat different.

– The cell wall of a plant cell exerts pressure that

prevents the cell from taking in too much water and

bursting when placed in a hypotonic environment.

– But in a hypertonic environment, plant and animal cells

both shrivel.


Video: Paramecium Vacuole

Video: Chlamydomonas

Video: Turgid Elodea

Video: Plasmolysis

05_05ParameciumVacuole_SV.mpg

05_05Chlamydomonas_SV.mpg

05_05TurgidElodea_SV.mpg

05_05Plasmolysis_SV.mpg

Figure 5.5

Animal

cell

Plant

cell

Turgid

(normal)

Flaccid Shriveled

(plasmolyzed)

Plasma

membrane

Lysed Normal Shriveled

Hypotonic solution Isotonic solution Hypertonic solution

H2O H2O H2O H2O

H2O H2O H2O

5.6 Transport proteins can facilitate diffusion across membranes

Hydrophobic substances easily diffuse across a

cell membrane.

However, polar or charged substances do not

easily cross cell membranes and, instead, move

across membranes with the help of specific

transport proteins in a process called facilitated

diffusion, which

– does not require energy and

– relies on the concentration gradient.



Some proteins function by becoming a hydrophilic

tunnel for passage of ions or other molecules.

Other proteins bind their passenger, change

shape, and release their passenger on the other

side.

In both of these situations, the protein is specific

for the substrate, which can be sugars, amino

acids, ions, and even water.



Because water is polar, its diffusion through a

membrane’s hydrophobic interior is relatively slow.

The very rapid diffusion of water into and out of

certain cells is made possible by a protein channel

called an aquaporin.


Figure 5.6

Solute

molecule

Transport

protein

5.7 SCIENTIFIC DISCOVERY: Research on another membrane protein led to the discovery of aquaporins

Dr. Peter Agre received the 2003 Nobel Prize in

chemistry for his discovery of aquaporins.

His research on the Rh protein used in blood

typing led to this discovery.


Figure 5.7

5.8 Cells expend energy in the active transport of a solute

In active transport, a cell

– must expend energy to

– move a solute against its concentration gradient.

The following figures show the four main stages of

active transport.


Animation: Active Transport

05_08ActiveTransport_A.html

Figure 5.8_s1

Transport protein

Solute

Solute binding 1

Figure 5.8_s2

Transport protein

Solute ADP ATP P

Solute binding Phosphate attaching

2 1

Figure 5.8_s3

Transport protein

Solute ADP ATP P

P Protein changes shape.


Transport 2 1 3

Figure 5.8_s4

Transport protein

Solute ADP ATP P

P P Protein changes shape.

Phosphate detaches.


Transport Protein reversion

4 3 2 1

5.9 Exocytosis and endocytosis transport large molecules across membranes

A cell uses two mechanisms to move large

molecules across membranes.

– Exocytosis is used to export bulky molecules, such as

proteins or polysaccharides.

– Endocytosis is used to import substances useful to the

livelihood of the cell.

In both cases, material to be transported is

packaged within a vesicle that fuses with the

membrane.


5.9 Exocytosis and endocytosis transport large molecules across membranes

There are three kinds of endocytosis.

1. Phagocytosis is the engulfment of a particle by wrapping

cell membrane around it, forming a vacuole.

2. Pinocytosis is the same thing except that fluids are taken

into small vesicles.

3. Receptor-mediated endocytosis uses receptors in a

receptor-coated pit to interact with a specific protein,

initiating the formation of a vesicle.


Animation: Phagocytosis

Animation: Exocytosis

Animation: Receptor-Mediated Endocytosis

Animation: Pinocytosis

Animation: Exocytosis and Endocytosis Introduction

05_09Phagocytosis_A.html

05_09Exocytosis_A.html

05_09ReceptMedEndocyt_A.html

05_09Pinocytosis_A.html

05_09_ExocytEndoIntro_A.html

Figure 5.9 Phagocytosis

Pinocytosis

Receptor-mediated endocytosis

EXTRACELLULAR FLUID

CYTOPLASM

Pseudopodium

“Food” or other particle

Food vacuole

Food being ingested

Plasma membrane

Plasma membrane

Vesicle

Receptor

Specific molecule

Coated pit

Coated vesicle

Coat protein

Coated pit

Material bound to receptor proteins

Figure 5.9_1

Phagocytosis

EXTRACELLULAR FLUID

CYTOPLASM

Pseudopodium

“Food” or other particle

Food vacuole

Food being ingested

Figure 5.9_2

Pinocytosis

Plasma membrane

Plasma membrane

Vesicle

Figure 5.9_3

Receptor-mediated endocytosis Plasma membrane

Receptor

Specific molecule

Coated pit

Coated vesicle

Coat protein

Coated pit


Figure 5.9_4

Food being ingested

Figure 5.9_5

Plasma membrane

Figure 5.9_6

Plasma membrane

Coated pit


ENERGY AND THE CELL


5.10 Cells transform energy as they perform work

Cells are small units, a chemical factory, housing

thousands of chemical reactions.

Cells use these chemical reactions for

– cell maintenance,

– manufacture of cellular parts, and

– cell replication.



Energy is the capacity to cause change or to

perform work.

There are two kinds of energy.

1. Kinetic energy is the energy of motion.

2. Potential energy is energy that matter possesses as a

result of its location or structure.


Figure 5.10

Fuel Energy conversion Waste products

Gasoline

Oxygen

Oxygen

Glucose

Heat energy

Combustion

Kinetic energy of movement

Energy conversion in a car

Energy conversion in a cell

Energy for cellular work


ATP ATP

Heat energy

Carbon dioxide

Carbon dioxide

Water

Water

Figure 5.10_1


Gasoline

Oxygen

Heat energy

Combustion

Kinetic energy of movement

Energy conversion in a car

Carbon dioxide

Water

Figure 5.10_2

Oxygen

Glucose

Energy conversion in a cell

Energy for cellular work


ATP ATP

Heat energy

Carbon dioxide

Water



Heat, or thermal energy, is a type of kinetic energy

associated with the random movement of atoms or

molecules.

Light is also a type of kinetic energy, and can be

harnessed to power photosynthesis.



Chemical energy is the potential energy available

for release in a chemical reaction. It is the most

important type of energy for living organisms to

power the work of the cell.


Animation: Energy Concepts

05_10EnergyConcepts_A.html


Thermodynamics is the study of energy

transformations that occur in a collection of matter.

Scientists use the word

– system for the matter under study and

– surroundings for the rest of the universe.



Two laws govern energy transformations in

organisms. According to the

– first law of thermodynamics, energy in the universe is

constant, and

– second law of thermodynamics, energy conversions

increase the disorder of the universe.

Entropy is the measure of disorder, or

randomness.



Cells use oxygen in reactions that release energy

from fuel molecules.

In cellular respiration, the chemical energy stored

in organic molecules is converted to a form that the

cell can use to perform work.


5.11 Chemical reactions either release or store energy

Chemical reactions either

– release energy (exergonic reactions) or

– require an input of energy and store energy

(endergonic reactions).



Exergonic reactions release energy.

– These reactions release the energy in covalent bonds of

the reactants.

– Burning wood releases the energy in glucose as heat

and light.

– Cellular respiration

– involves many steps,

– releases energy slowly, and

– uses some of the released energy to produce ATP.


Figure 5.11A

Reactants

Energy Products

Amount of

energy

released

Po

ten

tial en

erg

y o

f m

ole

cu

les


An endergonic reaction

– requires an input of energy and

– yields products rich in potential energy.

Endergonic reactions

– begin with reactant molecules that contain relatively

little potential energy but

– end with products that contain more chemical energy.


Figure 5.11B

Reactants

Energy

Products

Amount of

energy

required

Po

ten

tial en

erg

y o

f m

ole

cu

les


Photosynthesis is a type of endergonic process.

– Energy-poor reactants, carbon dioxide, and water are

used.

– Energy is absorbed from sunlight.

– Energy-rich sugar molecules are produced.



A living organism carries out thousands of

endergonic and exergonic chemical reactions.

The total of an organism’s chemical reactions is

called metabolism.

A metabolic pathway is a series of chemical

reactions that either

– builds a complex molecule or

– breaks down a complex molecule into simpler

compounds.



Energy coupling uses the

– energy released from exergonic reactions to drive

– essential endergonic reactions,

– usually using the energy stored in ATP molecules.


ATP, adenosine triphosphate, powers nearly all

forms of cellular work.

ATP consists of

– the nitrogenous base adenine,

– the five-carbon sugar ribose, and

– three phosphate groups.

5.12 ATP drives cellular work by coupling exergonic and endergonic reactions



Hydrolysis of ATP releases energy by transferring

its third phosphate from ATP to some other

molecule in a process called phosphorylation.

Most cellular work depends on ATP energizing

molecules by phosphorylating them.


Figure 5.12A_s1

Adenine P P P

Phosphate group

ATP: Adenosine Triphosphate

Ribose

Figure 5.12A_s2

ADP: Adenosine Diphosphate

P P P Energy

H2O Hydrolysis

Ribose

Adenine P P P

Phosphate group

ATP: Adenosine Triphosphate


There are three main types of cellular work:

1. chemical,

2. mechanical, and

3. transport.

ATP drives all three of these types of work.


Figure 5.12B

ATP ATP ATP

ADP ADP ADP P P P

P

P

P

P P

P

Chemical work Mechanical work Transport work

Reactants

Motor protein

Solute

Membrane protein

Product

Molecule formed Protein filament moved Solute transported


ATP is a renewable source of energy for the cell.

In the ATP cycle, energy released in an exergonic

reaction, such as the breakdown of glucose,is used

in an endergonic reaction to generate ATP.


Figure 5.12C

Energy from exergonic reactions

Energy for endergonic reactions

ATP

ADP P

HOW ENZYMES FUNCTION


5.13 Enzymes speed up the cell’s chemical reactions by lowering energy barriers

Although biological molecules possess much

potential energy, it is not released spontaneously.

– An energy barrier must be overcome before a chemical

reaction can begin.

– This energy is called the activation energy (EA).



We can think of EA

– as the amount of energy needed for a reactant molecule

to move “uphill” to a higher energy but an unstable state

– so that the “downhill” part of the reaction can begin.

One way to speed up a reaction is to add heat,

– which agitates atoms so that bonds break more easily

and reactions can proceed but

– could kill a cell.


Figure 5.13A

Activation

energy barrier

Reactant

Products

Without enzyme With enzyme

Reactant

Products

Enzyme

Activation

energy

barrier

reduced by

enzyme

En

erg

y

En

erg

y

Figure 5.13A_1

Activation

energy barrier

Reactant

Products

Without enzyme

En

erg

y

Figure 5.13A_2

Activation

energy

barrier

reduced by

enzyme

Reactant

Products

With enzyme

En

erg

y

Enzyme

Figure 5.13Q

Reactants

Products

En

erg

y

Progress of the reaction

a

b

c


Enzymes

– function as biological catalysts by lowering the EA

needed for a reaction to begin,

– increase the rate of a reaction without being consumed

by the reaction, and

– are usually proteins, although some RNA molecules can

function as enzymes.


Animation: How Enzymes Work

05_14HowEnzymesWork_A.html

5.14 A specific enzyme catalyzes each cellular reaction

An enzyme

– is very selective in the reaction it catalyzes and

– has a shape that determines the enzyme’s specificity.

The specific reactant that an enzyme acts on is

called the enzyme’s substrate.

A substrate fits into a region of the enzyme called

the active site.

Enzymes are specific because their active site fits

only specific substrate molecules.



The following figure illustrates the catalytic cycle of

an enzyme.


Figure 5.14_s1

1

Enzyme

(sucrase)

Active site

Enzyme available

with empty active

site

Figure 5.14_s2

2

1

Enzyme

(sucrase)

Active site

Enzyme available

with empty active

site

Substrate

(sucrose)

Substrate binds

to enzyme with

induced fit

Figure 5.14_s3

3

2

1

Enzyme

(sucrase)

Active site

Enzyme available

with empty active

site

Substrate

(sucrose)

Substrate binds

to enzyme with

induced fit

Substrate is

converted to

products

H2O

Figure 5.14_s4

4

3

2

1

Products are

released

Fructose

Glucose

Enzyme

(sucrase)

Active site

Enzyme available

with empty active

site

Substrate

(sucrose)

Substrate binds

to enzyme with

induced fit

Substrate is

converted to

products

H2O


For every enzyme, there are optimal conditions

under which it is most effective.

Temperature affects molecular motion.

– An enzyme’s optimal temperature produces the highest

rate of contact between the reactants and the enzyme’s

active site.

– Most human enzymes work best at 35–40ºC.

The optimal pH for most enzymes is near

neutrality.



Many enzymes require nonprotein helpers called

cofactors, which

– bind to the active site and

– function in catalysis.

Some cofactors are inorganic, such as zinc, iron, or

copper.

If a cofactor is an organic molecule, such as most

vitamins, it is called a coenzyme.


5.15 Enzyme inhibitors can regulate enzyme activity in a cell

A chemical that interferes with an enzyme’s activity

is called an inhibitor.

Competitive inhibitors

– block substrates from entering the active site and

– reduce an enzyme’s productivity.



Noncompetitive inhibitors

– bind to the enzyme somewhere other than the active

site,

– change the shape of the active site, and

– prevent the substrate from binding.


Figure 5.15A

Substrate

Enzyme

Allosteric site

Active site

Normal binding of substrate

Competitive

inhibitor Noncompetitive

inhibitor

Enzyme inhibition


Enzyme inhibitors are important in regulating cell

metabolism.

In some reactions, the product may act as an

inhibitor of one of the enzymes in the pathway that

produced it. This is called feedback inhibition.


Figure 5.15B

Feedback inhibition

Starting

molecule

Product

Enzyme 1 Enzyme 2 Enzyme 3

Reaction 1 Reaction 2 Reaction 3 A B C D

5.16 CONNECTION: Many drugs, pesticides, and poisons are enzyme inhibitors

Many beneficial drugs act as enzyme inhibitors, including

– Ibuprofen, inhibiting the production of prostaglandins,

– some blood pressure medicines,

– some antidepressants,

– many antibiotics, and

– protease inhibitors used to fight HIV.

Enzyme inhibitors have also been developed as pesticides and deadly poisons for chemical warfare.


Figure 5.16

1. Describe the fluid mosaic structure of cell membranes.

2. Describe the diverse functions of membrane proteins.

3. Relate the structure of phospholipid molecules to the structure and properties of cell membranes.

4. Define diffusion and describe the process of passive transport.

You should now be able to


5. Explain how osmosis can be defined as the

diffusion of water across a membrane.

6. Distinguish between hypertonic, hypotonic, and

isotonic solutions.

7. Explain how transport proteins facilitate diffusion.

8. Distinguish between exocytosis, endocytosis,

phagocytosis, pinocytosis, and receptor-mediated

endocytosis.



9. Define and compare kinetic energy, potential

energy, chemical energy, and heat.

10. Define the two laws of thermodynamics and

explain how they relate to biological systems.

11. Define and compare endergonic and exergonic

reactions.

12. Explain how cells use cellular respiration and

energy coupling to survive.




13. Explain how ATP functions as an energy shuttle.

14. Explain how enzymes speed up chemical

reactions.

15. Explain how competitive and noncompetitive

inhibitors alter an enzyme’s activity.

16. Explain how certain drugs, pesticides, and

poisons can affect enzymes.


Figure 5.UN01

Lower solute concentration

Lower free water

concentration

Lower solute

concentration

HIgher free water

concentration

HIgher solute

concentration

HIgher solute concentration

Solute

Water ATP

Facilitated

diffusion

Passive transport

(requires no energy) Active transport

(requires energy)

Diffusion Osmosis

Figure 5.UN02

ATP cycle ATP

ADP P

Energy from

exergonic

reactions

Energy for

endergonic

reactions

Figure 5.UN03

Molecules cross

cell membranes

passive

transport

polar molecules

and ions

diffusion

moving

down

moving

against requires

by by

may be

uses

uses

of of

ATP

(a)

(b)

(c)

(d)

(e)

Figure 5.UN04

a.

b.

c.

d.

e.

f.

Table 5.UN05

Figure 5.UN06

pH

Rate

of

reacti

on

10 9 8 7 6 5 4 3 2 1 0

chapter 5 the working cell - north hunterdon-voorhees ... · allowing some substances to cross more...

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