biophysics i (bphs 4080)

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Biophysics I (BPHS 4080) York University Winter 2018 Lecture 4 Instructors: Prof. Christopher Bergevin ([email protected]) Website: http://www.yorku.ca/cberge/4080W2018.html Reference/Acknowledgement: - TF Weiss (Cellular Biophysics) - D Freeman

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Page 1: Biophysics I (BPHS 4080)

Biophysics I (BPHS 4080)

York UniversityWinter 2018Lecture 4

Instructors: Prof. Christopher Bergevin ([email protected])

Website: http://www.yorku.ca/cberge/4080W2018.html

Reference/Acknowledgement:- TF Weiss (Cellular Biophysics) - D Freeman

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Weiss (1996)

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Wikipedia

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Freeman

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Diffusion Through Cell Membranes: History 101

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Freeman

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Freeman

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Freeman

Membrane Diffusion: Summary

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Dynamics of Membrane Diffusion

- Numerical solution to eqns.

- Arbitrary initial condition (top)

- Fast dynamics (middle)

- Steady-state set up (middle)

- Eventually, the two compartments change (bottom)

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Effect of changing parameters on flux: What is being changed?

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D*2k/2d*2D*2

D/2d*2

k/2D*2 D/2 k/2

k/2d*2

D*2d*2

d*2

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Question(s)

à What are cell membranes made of?

à How does one go about determining such?

Wikipedia

à It is only relatively recently we had a picture such as this!!

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Empirical means to estimate cell diffusion?

Flow cytometer

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Diffusion of ethylene glycol through Chara membrane (Collander)(see Weiss eqns. 3.56, 3.58, 3.60)

‘Collander Plot’(see Weiss sec.3.8.4)

- strong correlation between solute permeability and solute ether:water partition coefficient

- supports Overton’s rules & dissolve-diffuse mechanism

- relates in molecular weight (i.e., there is a strong ‘physical’ aspect to line of thought)

à Raises question as to what solvent best resembles partitioning in actual membranes

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à These figures represent the key empirical observations leading up to the deduction of what constitutes the cell membrane

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- Diffusion is slow over long distances (e.g., neuron carrying informationto and from the toe to the base of the spinal cord)

- So how else might things get across a cell membrane? Could such a mechanism speed up ‘transport’?

Þ Specialized ion channels (permeability unique to different ions)

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Exercise

Two adjoining cells have closely apposed membranes. The concentrations of uncharged solutes n are c1n and c2n inside cells 1 and 2, respectively, and con in the intercellular space. The membrane permeabilities for this solute are P1 and P2 for the membranes of cell 1 and 2, respectively. Find the net permeability, P , between the inside of cell 1 and the inside of cell 2 in terms of P1 and P2, where

and φn is the steady-state flux of n in mol/(cm2·s) across both membranes.

Page 23: Biophysics I (BPHS 4080)