biochemistry biology biotechnology by professor, dr. jim mattoon director, center for biotechnology...
TRANSCRIPT
BIOCHEMISTRYBIOLOGY
BIOTECHNOLOGYBy
Professor, Dr. Jim MattoonDirector, Center for Biotechnology and
Bioinformatics1090 Garlock Lane, Colorado Springs, Colorado
80918(719) 599-7992; [email protected]
www.uccs.edu/~biology/programs/biotech.htm
September 15, 2007
MBAA-Rocky Mountain District Meeting
YEAST
YEAST BIOCHEMISTRY
Eduard Buchner 1897
Alcoholic fermentation by cell-free extracts of yeast.
“zymase”
ZYMASE
• NOT A SINGLE ENZYME
• A MULTIENZYME SYSTEM
• EACH ENZYME CATALYZES A SINGLE CHEMICAL CHANGE IN A CHAIN OF
REACTIONS NOW CALLED GLYCOLYSIS
GLYCOLYSIS
• INVOLVES MANY ENYMES
• AIDED BY COENZYMES DERIVED FROM VITAMINS
• SIMILAR ENZYMES AND COENZYMES FOUND IN MUSCLE EXTRACTS
• MUCH OF BIOCHEMISTRY IS UNIVERSAL IN LIVING ORGANISMS.
COMPARE YEAST & MUSCLEGLYCOLYSIS
YEAST
START: SUGAR
END: ETHANOL + CO2
MUSCLE
START: SUGAR
END: LACTIC ACID
FATHERS OF MICROBIOLOGY
• LOUIS PASTEUR – FRANCE– ALCOHOLIC FERMENTATION CAUSED BY
LIVING YEAST CELLS
• ROBERT KOCH – GERMANY– MANY DISEASES CAUSED BY LIVING
CELLS OF BACTERIA
YEAST BIOLOGY
• SINGLE CELL
• REPRODUCES BY BUDDING
• GROWS WITH OR WITHOUT AIR
• HAS A TRUE NUCLEUS WITH MULTIPLE LINEAR CHROMOSOMES
• HAS A TOUGH CELL WALL
• MUCH LARGER THAN BACTERIA
VITAMIN DISCOVERY WITH YEAST
• RIBOFLAVIN
• FOLIC ACID
• BIOTIN
• COENZYME FOR RESPIRATION
• CURE FOR LARGE CELL ANEMIA
• BIOASSAY - ALLOWED PURIFICATION OF FOLIC ACID
YEAST BIOLOGY
• ANATOMY & CELL BIOLOGY
• REPRODUCTION
• NUTRITION
• LIFE CYCLE
• GENETICS
• TRANSFORMATION
FUNCTIONS OF CELL COMPONENTS
• NUCLEUS: CHROMOSOMES [Strings of genes that control inheritance-DNA].
• VACUOLE: Recycling center
• CYTOPLASM: – Enzymes: Catalytic proteins controlling
metabolism, including fermentation – Ribosomes: Protein factories
YEAST GENETICS I• Founded by Øjvind Winge working at
the laboratories of the Carlsberg Brewery in Copenhagen in the late 1930s and early 1940s.
• He was interested in genes that controlled fermentation, particularly genes that controlled maltose fermentation.
• During mashing of malt, the main sugar produced is maltose.
LIFE CYCLE - PLOIDY
PLOIDYChromo-
some SetsChromo-some No.
MatingTypes
HAPLOID ONE 16a or
alpha(α)
DIPLOID TWO 32No
Mating
POLY-PLOID
Three orMore
16 X N ---
YEAST GENETICS II• He first had to work out the yeast life-
cycle & micro dissection methods.
• Sexual reproduction – Double chromosomes [Diploids 2n--->4n]
– Pairs separate, then separate again. 4n---> n+n+n+n. 4 haploid spores
– Spores germinate & budding follows– Genes segregate in pairs.– For example mating type;2 α : 2 αlpha.– Different forms of same gene also 2:2.
YEAST GENETICS III• During the next 50 years over 1000
genes were studied and it was established the they were scattered over 16 chromosomes.
• In the early 90s, André Goffeau organized about 30 labs who sequenced the entire yeast genome, over 6,200 genes. The sequences were published in 1996.
• Many of these genes have now been cloned.
YEAST BIOTECHNOLOGY
CREATING BREWING YEAST THAT FERMENTS STARCH DIRECTLY
• A wild yeast, Saccharomyces diastaticus, secretes glucoamylase, an enzyme that digests starch to form glucose.
• We have cloned the STA gene that encodes glucoamylase and used the STA DNA to transform both lab strains and a brewing yeast strain so that they can ferment starch directly.
pSTA PLASMID
TRANSFORMING BREWING YEAST
• TREAT CELLS WITH LiAc
• ADD STA PLASMID DNA
• PLATE ON HIGH COPPER MEDIUM
• SELECT Cu-RESISTANT COLONIES
• TEST FOR STARCH DIGESTION
TRANSFORMATION AND EXPRESSION OF STA GENE• PLASMID DNA IS REPLICATED AS A MINI-
CHROMOSOME.• RNA POLYMERASE MAKES AN RNA
COPY OF STA GENE.• RNA COPY IS TRANSLATED INTO
GLUCOAMYLASE PROTEIN.• SECRETED ENZYME DIGESTS STARCH. • CELLS FERMENT STARCH!