bi 370 general ecology draft copy - wpmu dev

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As part of the Science Literacy Program we will pay special attention to uncovering ways science is connected to larger societal issues and big ideas across and within the discipline. SLP courses include General Education courses for non-science majors and courses for science majors taught by teams who will include opportunities during class time for you to engage with the class topics through a variety of activities. For more information about the program visit http://scilit.uoregon.edu. BI 370 General Ecology CRN:11084 Fall 2018 Lecturer Tobias Policha [email protected]; Office hour: Wednesday 10:00-11:00, 32 Klamath. Graduate Employees Kayla Evens [email protected]; Office hour: Friday 10:00-11:00, 360 Onyx. Max Spencer [email protected]; Office hour: Tuesday 13:00-14:00, 360 Onyx. COURSE OVERVIEW This is an introductory course focusing on the scientific study of organisms’ interactions with abiotic and biotic components of the environment. This course will include general principles of ecology and contemporary applications, as well as methods used in studying ecological interactions. A basic working knowledge of biology and chemistry will be assumed. The prerequisite for this course is Biology 213/283H or the equivalent. COURSE GOALS Appreciate the broad biological significance of ecological theory. Understand the questions that ecologists ask and the methods they use to study them. Develop your ability to apply quantitative skills to analyze and interpret ecological data. COURSE OUTCOMES Students should be able to: 1. Survey key principles of organisms’ interactions with abiotic and biotic components of ecosystems. 2. Understand techniques used in studying plant and animal species, communities, and ecological interactions. 3. Apply quantitative reasoning and analysis to biological science problems. 4. Read and critically evaluate primary literature in the field of ecology. 5. Ask questions, test hypotheses, and write reports in the format of a scientific journal.

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AspartoftheScienceLiteracyProgramwewillpayspecialattentiontouncoveringwaysscienceisconnectedtolargersocietalissuesandbigideasacrossandwithinthediscipline.SLPcoursesincludeGeneralEducationcoursesfornon-sciencemajorsandcoursesforsciencemajorstaughtbyteamswhowillincludeopportunitiesduringclasstimeforyoutoengagewiththeclasstopicsthroughavarietyofactivities.Formoreinformationabouttheprogramvisithttp://scilit.uoregon.edu.

BI370GeneralEcologyCRN:11084

Fall2018

[email protected];Officehour:Wednesday10:00-11:00,[email protected];Officehour:Friday10:00-11:00,[email protected];Officehour:Tuesday13:00-14:00,360Onyx.

COURSEOVERVIEWThisisanintroductorycoursefocusingonthescientificstudyoforganisms’interactionswithabioticandbioticcomponentsoftheenvironment.Thiscoursewillincludegeneralprinciplesofecologyandcontemporaryapplications,aswellasmethodsusedinstudyingecologicalinteractions.Abasicworkingknowledgeofbiologyandchemistrywillbeassumed.TheprerequisiteforthiscourseisBiology213/283Hortheequivalent.

COURSEGOALSAppreciatethebroadbiologicalsignificanceofecologicaltheory.

Understandthequestionsthatecologistsaskandthemethodstheyusetostudythem.Developyourabilitytoapplyquantitativeskillstoanalyzeandinterpretecologicaldata.

COURSEOUTCOMES

Studentsshouldbeableto:1.Surveykeyprinciplesoforganisms’interactionswithabioticandbioticcomponentsofecosystems.2.Understandtechniquesusedinstudyingplantandanimalspecies,communities,andecologicalinteractions.3.Applyquantitativereasoningandanalysistobiologicalscienceproblems.4.Readandcriticallyevaluateprimaryliteratureinthefieldofecology.5.Askquestions,testhypotheses,andwritereportsintheformatofascientificjournal.

Policha

BI370 http://scilit.uoregon.edu 2

COURSEFORMATLectures(Monday,WednesdayandFriday9:00-9:50in116Esslinger)Youshoulddotheassignedreadingsbeforecomingtothelectures.Duringsomeofthelecturestherewillbeactivitiesthatwillhelpyoutolearndifficultconcepts;thesewilloftenbedonecollaborativelywithtwoorthreestudentsdiscussingtheproblemtogetherforafewminutesbeforediscussingtheproblemasawholeclass.Youractiveparticipationinlecturewillhelpyoutobetterunderstandthematerialandprepareyouforexams.Lab[Thursday9:00-11:50(CRN11085)or12:00-14:50(CRN11085)in13Klamath]Weconsiderthelabstobeanintegralpartofthecourse.Wehavetriedtodesignactivelearningexperiencesthatwillbroadenyourunderstandingofwhatthescienceofecologyisallabout.LabhandoutswillbeavailableonCanvasandshouldbereadbeforecomingtolab.Labhandoutswillusuallybeturnedinattheendofeachlaboratthebeginningofclassthefollowingday(wewillannouncethisduringeachlab).Labscannotbemadeupbecauseseveralinvolvespecialmaterialorequipment.Youmustattendthelabsectionthatyouareregisteredfor.Eachlabisworthtwoandahalfpercentofyourfinalgrade.FieldTrips[Saturday9/29(CRN11085)orSunday9/30(CRN11085)&Saturday11/10(ALL)]Willbeacombinationofnaturalhistoryanddatacollection.Eachtripisworthfourpercentofyourfinalgrade.Pleasedressappropriatelyforfieldtripsaswemightgetcold,wet,andmuddyandmayencounterdifficultterrain.Whileinthefield,youwillneed:• Closed-toedshoes(e.g.,hikingboots,rubberboots,sneakers)• Longpantsandwarmclothing(wewillbewalkingthroughbrushthatcanscratcharmsand

legs).Layersarerecommended.ForHJAndrews’strip,wewillbetreeclimbinginthecanopy.Raingearishighlyrecommended(includingrainpants!).

• Drinkingwaterandmeals/snacks(lunchwillbeprovidedforOregonCoasttrip)• Afieldnotebook(RiteintheRain®recommended)isencouragedasyouwillbetestedonsome

ofthespeciesandconceptsweencounterinthefield.1)WillametteNationalForest(HJAndrews):SaturdaySeptember29th(LabCRN11085)orSunday

September30th(LabCRN11086);Depart8:00fromMillRaceParkingLot;returnnolaterthan17:00.

2)OregonCoast(OIMB&OregonDunes):Saturday,November10th(Everyone;bothlabstogether).Depart6:45amfromMillRaceParkingLot;returnnolaterthan19:00.

COURSEMATERIALS

TextbookBowman,W.,S.Hacker,M.Cain.2017.Ecology4thEdition.SinauerAssociates,Sunderland,MA.Thereadingsincludebackgroundmaterialusefulforpreparingforlectureandforstudyingforquizzes.Agoodstrategywouldbetoskimovertheentirechapterfirst,concentratingonthemajorconcepts,thentore-readmorecarefullyfordetails.Theolder(andcheaper!)3rdeditionofthistextdoesnotappeartobesubstantivelydifferent,andmaybeusedforthisclass.Somecontentmayvary.i<clickers(PersonalResponseSystems)i<clickerswillbeusedinclasstoencourageparticipationandtoprovidevaluablefeedbacktoinstructorsandstudents.YouwillneedtoregisteryourclickeronthecourseCanvassite.Pointswillbeearnedtwodifferentways:(1)attendanceandparticipationalone,notonwhetherthequestionisanswered

Policha

BI370 http://scilit.uoregon.edu 3

correctly;(2)correctlyansweringthequestions.Youri<clickerresponseswilladduptofourpercentofyourfinalgrade.Yourgradewillbebasedon90%ofthetotalpossiblepoints(lowest10%willbedropped).CanvasCoursedocumentswillbepostedontheCanvascoursewebsite.Theseincludelecturenotes,assignments,requiredreadings,informationontheresearchpaper,announcements,andsupplementalmaterial.IrecommendcheckingCanvasfrequently.PrimaryLiteratureSeveralarticlesfromscientificjournalswillbeassignedthroughoutthesession.ThearticleswillbeavailablethroughCanvasunderthe‘Readings’Module.

COURSEASSESSMENTS

Assessment Each Number TotalLabs 2.5% 9 22.5%MidtermExams 10% 2 20%Papers 10% 2 20%Final 15% 1 15%Quizzes 0.3% 35/36 10.5%FieldTrips 4% 2 8%iClickers tbd tbd 4%TOTAL 100%

Labs&FieldTripsLabsthesewillbeworth2.5%ofyourfinalgrade,fieldtripswillbeworth4%each.Seeabove(CourseFormat)fordetails.ExamsTherewillbetwomidtermsandafinalinthiscourse.Theexamswillcovermaterialfromlecture,lab,fieldtripsandthereadings.Theywillbeamixofshortanswerandothertypesofquestions.Thefinalwillbecumulativeandisscheduledfor10:15WednesdayDecember5th.ResearchPapersYouwilldevelopahypothesis,collectdataandwritetwooriginalresearchpapersthisterm.WewillcollectdataasaclassduringthefieldtripsandworkontheinitialanalysistogetherinLab.Youwillberesponsibleforwritingupyourmethodsandresultsaswellasanintroductionanddiscussionbasedonyourreviewoftherelevantliterature.ThisprojectwillbeintroducedinclassandmoredetailsincludingarubricwillbepostedtoCanvas.Eachonewillbeworth10%ofyourfinalgrade.DailyReadingQuizzesBriefreadingquizzeswillbeadministeredonCanvaspriortoallclasssessionstoassurethatthereadingsaredoneinatimelymanner.Questionsmayreflectreadingsfromthetextbook,assignedarticlesorpre-labmaterials.Eachquizwillbeworth0.3%ofyourfinalgrade.Yourlowestquizscorewillbedropped.

Policha

BI370 http://scilit.uoregon.edu 4

i<clickers(PersonalResponseSystems)Seeabove(CourseMaterials)

ON-CAMPUSRESOURCESTutoringandLearningCenter(TLC)Drop-inmathandwritingsupportinadditiontotutoring,studyskillssupport,andClassEncore.Locatedinthe4thFloorKnightLibrary(541)346-3226,[email protected](AEC)TheUniversityofOregonisworkingtocreateinclusivelearningenvironments.Ifthereareaspectsoftheinstructionordesignofthiscoursethatresultinbarrierstoyourparticipation,pleasenotifyusassoonaspossible.YouarealsoencouragedtocontacttheAccessibleEducationCenter.Ifyouarenotastudentwithadocumenteddisability,butyouwouldlikeforustoknowaboutclassissuesthatwillimpactyourabilitytolearn,comevisitduringofficehourssothatwecanstrategizehowyoucangetthemostoutofthiscourse.OregonHall,Suite360.(541)346-1155,[email protected],https://aec.uoregon.edu.CenterforMulticulturalAcademicExcellence(CMAE)Promotingstudentretentionandpersistenceforhistoricallyunderrepresentedandunderservedpopulations.Programsandservicesthatsupportretention,academicexcellence,andsuccessattheUOandbeyond.Committedtoallstudents,includingundocumentedandtuitionequitystudents.Locatedonthe1stFloorofOregonHall(541)346-3479,cmae@uoregon.edu.CounselingCenterTheCounselingCenterprovidesstudentswithconfidentialconsultation24hoursaday,7daysaweek.Theirnumberis346-3227.Studentsoftenbelievethattheirissuesarenot“severe”enoughforthemtocall,butattheCounselingCenter,noproblemistoosmall.https://counseling.uoregon.edu/

COURSEPOLICIESAcademicIntegrityAllstudentsareexpectedtocompleteassignmentsinamannerconsistentwithacademicintegrity.Studentsmustproducetheirownworkandproperlyacknowledgeanddocumentallsources(ideas,quotations,paraphrases).StudentscanfindmorecompleteinformationabouttheUniversityofOregon’sPolicyonAcademicDishonestyinthestudentconductcode(locatedatdos.uoregon.edu/conduct).InclusivenessOpeninquiry,freedomofexpression,andrespectfordifferencearefundamentaltoacomprehensiveanddynamiceducation.Wearecommittedtoupholdingtheseidealsbyencouragingtheexploration,engagement,andexpressionofdivergentperspectivesanddiverseidentities.ElectronicDevicesPleaseputawayanddonotuseyourowncomputers,cellphones,orotherelectronicdevicesduringlectureorlab.Evidence(iehttps://www.nytimes.com/2017/11/22/business/laptops-not-during-lecture-or-meeting.html?_r=3)suggeststhatcomputersarenotagoodwayfortakingnotesinbiologycoursesandtheyaredistractingtootherstudents.Pleasebepreparedtowriteanddrawbyhandinthisclass.

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BI370 http://scilit.uoregon.edu 5

CommunicationWewilltomakeourselvesasavailableaspossibleforquestionsrelatedtocoursematerial.However,weaskthatyouposequestionstofellowstudentsfirst.Ifitpertainstocourseadministration,double-checkthesyllabusandCanvas.)Ifyouemailafterregularbusinesshoursyoumaynothearbackfromusuntilthenextday.Pleaseinclude“Bi370”inthesubjectlineofallemails.ProhibitedDiscriminationandHarassmentUOiscommittedtoprovidinganenvironmentfreeofallformsofprohibiteddiscriminationandharassment,includingsexorgenderbasedviolence.Asaninstructor,oneofmyresponsibilitiesistohelpcreateasafelearningenvironmentformystudentsandforthecampusasawhole.Studentsexperiencinganyformofprohibiteddiscriminationorharassmentmayseekfurtherinformationonsafe.uoregon.edu,respect.uoregon.edu,titleix.uoregon.edu,oraaeo.uoregon.eduorcontacttheTitleIXoffice(541-346-8136),OfficeofCivilRightsComplianceoffice(541-346-3123),orDeanofStudentsoffices(541-346-3216),orcallthe24-7hotline541-346-SAFEforhelp.

COURSESCHEDULE(subjecttorevision)

WEEK DATE LECTURE TOPIC READING QUIZZES(DUEAT9:00AM)

1 9/24

1 TheWebofLife Ch.1

1 9/26 2 ThePhysicalEnvironment Ch.2 1

1 2/27 LAB1:VariationinNature&PlantCompetitionSet-Up

LabHandout 2

1 9/28 3 TheBiosphere Ch.3 3

1 9/29or30

FIELDTRIP:Cascades(OUTSIDE) Handout 4

2 10/1 4 CopingwithVariation:Temp.andWater Ch.4 5

2 10/3 5 CopingwithVariation:Energy Ch.5 6

2 10/4 LAB2:StomatalDensity:DataCollection LabHandout 7

2 10/5 6 Evolution Ch.6 8

3 10/8 7 LifeHistory Ch.7 9

3 10/10 8 BehavorialEcology Ch.8 10

3 10/11 LAB3:StomatalDensity:Analysis&Writing

LabHandout 11

3 10/12 9 PopulationDistributionandAbundance Ch.9 12

4 10/15 10 PopulationGrowthandRegulation Ch.10 13

4 10/17 11 PopulationDynamics Ch.11 14

4 10/18 LAB4:Demography:DataCollection(OUTSIDE)

LabHandout 15

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BI370 http://scilit.uoregon.edu 6

4 10/19 EXAMI

5 10/22 12 Predation Ch.12 16

5 10/24 13 Parasitism Ch.13 17

5 10/25 LAB5:SpeciesInteractions(OUTSIDE?) LabHandout 18

5 10/26 14 Competition Ch.14 19

6 10/29 15 Mutualism Ch.15 20

6 10/31 16 NatureofCommunities Ch.16 21

6 11/1 LAB6:PlantCompetition:DataCollection&Analysis

LabHandout 22

6 11/2 17 ChangeinCommunities Ch.17 23

7 11/5 18 Biogeography Ch.18 24

7 11/7 19 SpeciesDiversity Ch.19 25

7 11/8 LAB7:FieldtriptoDeltaPonds(OUTSIDE)

LabHandout 26

7 11/9 20 Production Ch.20 27

7 11/10 FIELDTRIP:Coast(OUTSIDE) Handout 28

8 11/12 21 EnergyFlow Ch.21 29

8 11/14 22 NutrientCycles Ch.22 30

8 11/15 LAB8:FieldtripAnalysis&DecompositionSet-Up

LabHandout 31

8 11/16 EXAMII

9 11/19 23 GlobalEcology Ch.25 32

9 11/21 24 ConservationBiology Ch.23 33

9 11/22 NOLAB(Thanksgiving)

9 11/23 NOCLASS(Thanksgiving)

10 11/26 25 EcosystemManagement Ch.24 34

10 11/28 26 SoilBiodiversity TBA 35

10 11/29 LAB9:Decomposition:DataCollection&Analysis

LabHandout 36

10 12/30 27 Review

FinalsWeek

12/5 FINALEXAM

December5,10:15AM Enjoythebreak!

Imagesfrom:https://www.fotoaparat.cz/storage/pm/11/01/29/753960_2c422.jpgandhttps://naturesmicrocosm.com/tag/coevolution/.