working group meeting 2013 objective 3: deploy tools to increase user-specified flexible queries

Working Group Meeting2013

Objective 3:Deploy tools to increase user-specified flexible queries

Current model2

MaizeGDB currently allows researchers to access data record-by-record

Goal

DATA: Generating sets of data ANALYSIS: Extracting information based on a set of

data

3

Allow researchers access to larger sets of data

Generating sets of data

Physical location Co-occupancy Characteristics Co-Expression Function

4

Extracting data based on a set of data

DATA: Sequence Annotations Attributes

ANALYSIS Enrichment Expression

5

BioMart

Free, Open Source Standardized Allows integration Flexible Plant DBs: Gramene, Ensembl Plants,

Rice-Map, Potato database, Phytozome MODs : WormBase, Mouse Genome

Informatics, and SalmonDB.

6

Sequence7

Annotations8

Attributes9

InterMine

Free, Open Source Data model is flexible and extensible Fast and flexible querying Web interface and analysis tools (focus

on list analysis) Actively being developed and deployed:

RatMine, MouseMine, YeastMine, WormMine, ZFINMine, and FlyMine

10

Enrichment11