phylotastic presentation - harmon

arbor: Enabling tree-thinking at broad spatial and temporal scales

Monday, June 4, 12

arbor

Visualization

Application and GUI logic

Monday, June 4, 12

arbor

• Visual, extensible software

• Load your data or use web services

• Use visual workflow interface to Interactively build models

• Scale analyses to very large trees

• Interact with cross-linked data

• Format and export results

Visualization

Application and GUI logic

Monday, June 4, 12

this software will allow you to:

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this software will allow you to:

test key evolutionary hypotheses

with methods that are new and flexible

using massive amounts of data

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visual interface

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Figure    2.  Web  services  in  phyloFlow.  phyloFlow  will  combine  local  computation  with  remote  access  to  data,  computation,  and  archiving.

Monday, June 4, 12

birth-death Constraints Varies on a branch

Brownian motion Species interactions

Varies across clades

Mk model Sudden jumps Varies through time

A Sample of arbor models

Monday, June 4, 12

birth-death Constraints Varies on a branch

Brownian motion Species interactions

Varies across clades

Mk model Sudden jumps Varies through time

A Sample of arbor models

Monday, June 4, 12

birth-death Constraints Varies on a branch

Brownian motion Species interactions

Varies across clades

Mk model Sudden jumps Varies through time

A Sample of arbor models

Monday, June 4, 12

birth-death Constraints Varies on a branch

Brownian motion Species interactions

Varies across clades

Mk model Sudden jumps Varies through time

A Sample of arbor models

Monday, June 4, 12

birth-death Constraints Varies on a branch

Brownian motion Species interactions

Varies across clades

Mk model Sudden jumps Varies through time

A Sample of arbor models

Monday, June 4, 12

birth-death Constraints Varies on a branch

Brownian motion Species interactions

Varies across clades

Mk model Sudden jumps Varies through time

A Sample of arbor models

Monday, June 4, 12

birth-death Constraints Varies on a branch

Brownian motion Species interactions

Varies across clades

Mk model Sudden jumps Varies through time

A Sample of arbor models

Monday, June 4, 12

test case: grasslands

Monday, June 4, 12

Figure    4.  Proposed  phyloFlow  work<low  for  Test  Case  1.  Information  processing  <lows  from  remote  sources  to  <ive  phyloFlow  modules.  First,  the  dataIntegrator  (A)  combines  phylogenetic,  distributional,  and  climactic  data  sources.  openModeller  (B)  then  creates  species  distribution  models,  and  Lagrange  (C)  tests  historical  biogeographic  hypotheses  incorporating  those  models.  Next,    phyloView  allows  geographic  (D)  and  phylogenetic  (E)  visualization  of    results.  Outputs  are  directed  to  the  dataOutput  module  (F),  which  can  save  results  both  locally  and  remotely.

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How do species interactions shape long-term patterns of

evolution?

Monday, June 4, 12

How do species interactions shape long-term patterns of

evolution?

Can we predict the genome structure of extinct taxa?

Monday, June 4, 12

How do species interactions shape long-term patterns of

evolution?

Can we predict the genome structure of extinct taxa?

Why are some parts of the tree of life so much more

diverse than others?

Monday, June 4, 12

How do species interactions shape long-term patterns of

evolution?

(your question here)

Can we predict the genome structure of extinct taxa?

Why are some parts of the tree of life so much more

diverse than others?

Monday, June 4, 12