basic biochemistry. what is biochemistry? biochemistry is the study of the chemical interactions of...

Basic Biochemistry

What is Biochemistry?

Biochemistry is the study of the chemical interactions of living things.

Biochemists study the structures and physical properties of biological molecules. Often are involved in the manufacture of new

drugs and medical treatments

Biochemistry: where chemistry and biology meet head-on

Living things require millions of chemical reactions within the body, just to survive.

Metabolism = all the chemical reactions occurring in the body.

Organic molecules: usually associated with living things. always contain CARBON. are “large” molecules, with many atoms always have covalent bonds (share electrons)

Composition of an Atom

Protons: Nucleus, positive charge Neutrons: Nucleus, no charge Electron: Energy levels, negative

charge

Isotopes

Atoms of the same element with a different number of neutrons.

Benefits: the radiation given off of some isotopes can be used to treat cancer and kill bacteria that cause food to spoil.

Can also be used as “tracers” to follow the movement of substances thru the body.

Bonding

There are 2 main types of bonds: Ionic: When atoms transfer

electrons Covalent: When atoms share

electrons

Acids & Bases

Acids have a pH of 0-6 Bases have a pH of 7-14 Neutral = 7 What is the optimal pH of human

blood? 7.4

Buffers

Substances that can absorb or release H+ as levels fluctuate within living systems to help maintain a constant pH

Example: Carbonic Acid Bicarbonate (buffer that helps maintain pH of the blood)

Macromolecules of Cells

Macro = large

4 types of macromolecules in cellular biology

1. Carbohydrates2. Lipids3. Proteins4. Nucleic Acids

Macromolecule #1: Carbohydrates

Sugars and groups of sugars

Purposes: energy and structure

Includes three types: Monosaccharide (1 sugar – quick energy) Disaccharide (2 sugars – short storage) Polysaccharide (many sugars – energy

long storage & form structures)

Macromolecule #1: Carbohydrates Polysaccharide Examples:

Glycogen—glucose polymer stored for future energy needs. Found in liver, muscle and sperm, etc.

Cellulose—glucose polymer used to form fibers for plant structures. Humans can’t digest (fiber). Most abundant organic molecule.

Chitin—glucose polymer for exoskeletons of some crustaceans & insects.

Polysaccharides

Polysaccharides

Macromolecule #2: Lipids

Insoluble in water (think oil & water)4 types:

1-triglycerides (fats & oils) (long-term energy storage, insulation)

2-phospholipids (primary component of cell membrane)

3-steroids (cell signaling) cholesterol molecules modified to form sex

hormones. (e.g. testosterone, estrogen, etc.) 4-waxes (protection, prevents water loss)

Used mainly by plants, but also bees, some furry animals and humans.

Triglycerides

Phospholipids

Steroids

Waxes

Macromolecule #3: Proteins

Probably the most complicated of all biological molecules.

Serve the most varied purposes, including:

Support structural proteins (e.g., keratin, collagen)

Enzymes speed up chemical reactions

Transport cell membranes channels, transporters in blood (e.g., Hemoglobin)

Defense antibodies of the immune system

Hormones cell signaling (e.g., insulin)

Motion contractile proteins (e.g., actin, myosin)

CollagenCollagen

Antibodies

Cellular Transport

actin & actin & myosin fibers myosin fibers

in musclesin muscles

Motion

Macromolecule #3: Proteins

The building blocks of proteins are AMINO ACIDS. There are only 20 types of Amino Acids.

There are millions of different proteins, and they are all built from different combinations of the 20 amino acids.

Amino acids join together to form peptides, polypeptides, and polypeptide chains.

Enzymes

Act as a lock and key Specific: One substrate fits one

enzyme Reusable: One enzyme can break

down many substrates

Competitive Inhibition

In competitive inhibition, the inhibitor binds to the same active site as the normal enzyme substrate, without undergoing a reaction.

Induced Fit Model

In this model, the enzyme changes shape on substrate binding. The active site forms a shape complementary to the substrate only after the substrate has been bound

Macromolecule #4: Nucleic Acids

Nucleotides: building blocks of nucleic acids. Each nucleotide contains

(a) phosphate molecule, (b) nitrogenous base, and (c) 5-carbon sugar

Several types of nucleic acids, including: DNA: deoxyribonucleic acid

Genetic material, double stranded helix RNA: ribonucleic acid

Genetic material, single stranded ATP: adenosine triphosphate

High energy compound

DNADNA

Nucleotide Structure

THE BIG PICTURETHE BIG PICTURE

Chemistry is essential for Chemistry is essential for life…life…