9 september 2010
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9 September 2010 Extending our Reach: Librarians as Research Partners in the Emerging Digital Data Framework Jake Carlson, Data Research Scientist, Purdue University Libraries . Extending our Reach: Librarians as Research Partners in the Emerging Digital Data Framework. Jake Carlson - PowerPoint PPT PresentationTRANSCRIPT
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9 September 2010Extending our Reach: Librarians as Research Partners in the Emerging Digital Data FrameworkJake Carlson, Data Research Scientist, Purdue University Libraries
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Extending our Reach: Librarians as Research Partners in the Emerging
Digital Data Framework
Jake CarlsonData Research Scientist
Purdue University Libraries & D2C2
Transportation Librarians Roundtable
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Content
1. Data Curation and the Role of Libraries.
2. The Work of the Purdue Libraries and D2C2
3. My Work as a Data Research Scientist
4. What’s coming next?
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The Problem Research is becoming more data driven.
Increasingly, data has research value beyond the project it was generated for.
Data Deluge – the amount of data being produced is increasing exponentially, and the systems, tools and infrastructures to organize, manage, disseminate and preserve data have not kept pace.
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Defining Data Curation
“Data Curation is the activity of managing and promoting the use of data, starting from the point of creation, to ensure its fitness for contemporary purposes and availability for discovery and re-use.” P. Lord, et al.
“Data curation [is] the value-added activities and features that stewards of digital content engage in to make digital content meaningful or useful.” N. McGovern
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A Vision
“…science and engineering data are routinely deposited in well-documented form, are regularly and easily consulted and analyzed by specialists and non-specialists alike, are openly accessible while suitably protected, and are reliably preserved…”
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Roles for Libraries
“What role do the research and academiclibraries envision for themselves and doscientists envision for librarians in a digitaldata framework…?”
- To Stand the Test of Time…(2006) ARL. p.24
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Domain Science
Computer Science
Cyberinfra-structure
Archival Sciences
Lib/Info Sciences
ICenter
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Purdue Libraries 2004 initiative for Libraries to
collaborate with faculty across campus—apply library science knowledge and expertise to research problems: manage, organize, describe, disseminate, preserve information.
Particular emphasis on addressing data curation issues.Jim Mullins
Dean of the Libraries
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Access. Knowledge. Success
secondarytertiary
resources
publishedresearchtraditional
“published”research
non-traditional
unpublishedresearch
traditional/non
“published”data/
datasets
analyzeddata/
datasets
processeddata/
datasets
“raw”data/
datasets
Research traditionally moves in this direction
Library service traditionally moves in this direction
Given the changing nature of research and scholarly communication (i.e., e-research), how do librarians change to adapt to new ideas regarding what they collect to support research & education and how they provide access to it?
Modified from: Brandt, D.S. “Scholarly Communication” (in To Stand the Test of Time: Long-Term Stewardship of Digital Data Sets in Science and Engineering.: Final Report of Workshop New Collaborative Relationships: Academic Libraries in the Digital Data Universe. ARL, Washington, DC, September 2006.)
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The D2C2 Libraries sponsored research
center. Established in 2006 to focus on
issues associated with curating data sets for present and future research use.
Working in partnership with domain scientists and IT personnel to address the real world data needs of a research community.
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The Data Research Scientist
Help the Libraries move research strategically forward.
Help ramp up interaction with research faculty on campus.
Leverage interdisciplinary research collaborations.
Address the social, cultural and organizational aspects of data curation.
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My Background
Earned my MLS in 1998. Formerly a Subject Librarian for the
Social Sciences at a Liberal Arts Institution.
Skills and experience are mostly those of a “traditional” librarian. Minimal technology background and expertise.
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Interacting with Researchers
Building Connections & Relationships: Investigate Interrogate Invest
Common Barriers to Data Curation: Motivation Mechanisms Money
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Project Types Building Capacity Addressing Researcher Needs Partnerships in Research Projects
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Building Capacity Data Curation Profiles:
A tool for librarians and others to gather information on researcher needs for their data and to inform curation services.
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DCP Sections Information about the Data and its Context
Overview of the Research Focus Intended Audience Funding
Data Kinds and Stages Data Narrative (data lifecycle) Target Data for Sharing Use/re-use Value Contextual Narrative
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Data Table – Traffic Flow
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DCP SectionsInformation about Needs
Intellectual Property Organization and
Description of Data Ingest Access
Discovery Tools Interoperability Measuring Impact Data Management Preservation
http://datacurationprofiles.org
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Addressing Researcher’s Needs
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1. Recruitment / Enrollment
Recruitment • Medical History• Demographic Data• IRB approval—forms
Enrollment • Subject ID # assigned• Treatment Assigned • Additional Demographic Data• Age, Height, DoB• BMI• Tanner Staging (sex maturity)• Anthropometrics (leg length, etc.)
2. Treatment
Two Sessions (each 3 weeks – 2 weeks of data)• Blood Samples• Urine Samples• Fecal Samples• Bone Density Scans• Other (Isotopes?)
• Compliance rate of subjects?
• Date when sample collected• Sample ID • Addresses the sequential nature
of sample.
3. Sample Processing
Collected Samples are sent out for Processing
• Urine, Fecal, Blood & Total Calcium• Blood Serum Samples• Biochemical Markers – calcium metabolism and bone health•Vitamin D•Bone Scans•Isotopes
5. Calculations
•Menu Cycles -> Corresponding Calcium Levels•Total Calcium Intake• Urinary Calcium / Creatonine -> Corrected Urinary Calcium•Fecal Compliance -> Recoverability in grams and percent.•Diet minus Urine minus Fecal
4. Data Processing
Issues
• Data Entry• One person in charge
of initial data• No tracking of who’s
done what and when• Data received via e-mail • Bottleneck Issues
7. Analysis
Issues• Data are made available to
collaborators for analysis• Different people are interested
in different aspects of the data -> subsets of the data are created and distributed.
• Analysis includes: linear and non-linear regression, and statistical modeling
• Analysis often done in SAS.
6. Data Delivery
Issues• Need for subsets of
data• Email as the delivery
mechanism• Version Control
8. Results
Issues• Presentations / Publication of
Journal Articles• Publication of Data as an
Appendix to Article• Publication of Data in a
Repository• Funder’s Requirements for Data Management, Dissemination and Preservation•Submission to a Data Repository
Master Spreadsheet
Camp Calcium – Current Data Workflow
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Data Management System
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Metadata
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Metadata Fields
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Research Partnerships The DRought Information Network (DRInet):
Develop a regional scale information web portal and tools for collecting, synthesizing, analyzing and disseminating datasets relating to drought.
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U.S. Drought Monitor
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driNET Role of the Libraries:
Assist in the identification of metadata standards that will meet user needs.
Develop discovery and navigation metadata for the portal.
Assist in the development and testing of tools to automate the metadata creation process.
Aid in the development and deployment of an interoperability standard (OAI-PMH) to facilitate the dissemination of data.
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driNET
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What’s Coming: Increased Interest / Oversight
OVPR’s Research Retention Policies and Practices H. R. 5116 – “America COMPETES Reauthorization Act of
2010” (April 22, 2010)(b) Establishment.—The Director of the Office of Science and
Technology Policy shall establish a working group under the National Science and Technology Council with the responsibility to coordinate Federal science agency policies related to the dissemination and long-term stewardship of the results of unclassified research, including digital data and peer-reviewed scholarly publications, supported wholly or in part by funding from the Federal science agencies.
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What’s Coming: Data Repositories
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What’s Coming: Skills / Roles
Research Data Management Forum: RDMF2: Core Skills Diagram
http://data-forum.blogspot.com/2008/12/rdmf2-core-skills-diagram.html
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Thank you! Questions?
Jake CarlsonData Research Scientist
Purdue University Libraries & D2C2
Transportation Librarians Roundtable