xspecies project wuhan 2011. xspecies project r / bioconductor training affylmgui training xspecies...
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Xspecies project
Wuhan 2011
Xspecies project
Xspecies project
R / BioConductor
training
AffylmGUItraining
Xspecies analysistraining
Normalisation, filtering and annotation
.CDF , filtering, stats and annotation
RMA Normalisation
Xspecies project
Hevea BrasiliensisRubber Tree
Chin Wei (Jonathan) Ong
Samples from Kew Gardens
Xspecies project
PxLyS1
PxLyS2 PxLyS3
RNAlater
Sampling strategyTwo plants (young / old)Three samples per leaf complex6 total chips.
Annotation: PxLySz
Sampling strategyTwo plants (young / old)Three samples per leaf complex6 total chips.
Annotation: PxLySz
cRNA
gDNA.cel
Xspecies CDF100
RNA.cel
Xspecies project
Chinese Purpleblow Maple (Acer truncatum)
Yuan Bao FengZhongxiu Zhang
Xspecies CDF150
Horqin Desert
Pilot Sampling strategy7 plants (6 month old) - 7 total chips.3 Beijing Cultivar3 Horquin Wildtype
1 drought challenged from Beijing Cultivar
Pilot Sampling strategy7 plants (6 month old) - 7 total chips.3 Beijing Cultivar3 Horquin Wildtype
1 drought challenged from Beijing Cultivar
Xspecies project
Saccharum sp.
Sugar CaneNatalia Martins
Xspecies CDF150
Sampling strategy3 stages x 3 replicates = 9 total chips
Sampling strategy3 stages x 3 replicates = 9 total chips
T1
T2
T3
Xspecies project
Mucuna pruriens var. utilis
VelvetbeanSandeepkumar Patil
Xspecies CDF100
Sampling strategyMany plants (3 month old)3 root samples3 shot samples= 6 total chips
Sampling strategyMany plants (3 month old)3 root samples3 shot samples= 6 total chips
Xspecies project
Remember to do the analysis
- and +
The cross species CDF
400
1000