workshop on constraint based methods for bioinformatics
DESCRIPTION
WCB’11 @. Workshop on Constraint Based Methods for Bioinformatics. Workshop Organizers Alessandro Dal Palù Università degli Studi di Parma, Italy Agostino Dovier Università degli Studi di Udine, Italy Andrea Formisano Università degli Studi di Perugia, Italy. Programme Committee - PowerPoint PPT PresentationTRANSCRIPT
Workshop on Constraint Based Methods for Bioinformatics
September 12, 2011 University of Perugia, Italy
Workshop OrganizersAlessandro Dal PalùUniversità degli Studi di Parma, ItalyAgostino Dovier Università degli Studi di Udine, ItalyAndrea FormisanoUniversità degli Studi di Perugia, Italy
Programme CommitteeRolf Backofen (Germany)Pedro Barahona (Portugal) Alexander Bockmayr (Germany)Mats Carlsson (Sweden)Alessandro Dal Palù (Italy)Simon de Givry (France)Agostino Dovier (Italy)Esra Erdem (Turkey)
François Fages (France)Andrea Formisano (Italy) Inês Lynce (Portugal) Neil Moore (Scotland)Enrico Pontelli (USA)Sven Thiele (Germany)Sebastian Will (Germany)
09:00 Invited Talk
Alessandro BrozziInferring Gene Pathways Controlling Clonal Outgrowth by High-throughput Insertional Mutagenesis Screens
09:55 Aljoscha Palinkas and Alexander Bockmayr.Petri Nets for Integrated Models of Metabolic and Gene Regulatory Networks
10:25 Coffee Break
10:55 Jimmy Vandel and Simon De Givry.A New Local Move Operator for Reconstructing Gene Regulatory networks
11:25 Steven Gay, Francois Fages, Thierry Martinez, and Sylvain Soliman.A Constraint Program for Subgraph Epimorphisms
with Application to Identifying Model Reductions in Systems Biology
11:55 Thomas Eiter, Thomas Krennwallner, and Christoph Redl.Declarative Merging of and Reasoning about Decision Diagrams
12:35 Lunch Break
14:00 Christian Theil Have.Constraints and Global Optimization for Gene Prediction Overlap Resolution
14:30 Marco Correia, Fabio Madeira, Pedro Barahona, and Ludwig Krippahl.Improving Multiple Sequence Alignments with Constraint Programming and Local Search
15:00 Michael Best, Kabi Bhattarai, Federico Campeotto, Alessandro Dal Palu', Hung Dang,Agostino Dovier, Ferdinando Fioretto, Federico Fogolari, Trung Le, and Enrico Pontelli.
Introducing FIASCO: Fragment-based Interactive Assembly for protein Structure prediction with COnstraints
15:40 Coffee Break
16:10 Panel & Discussion
WCB’11 @