what’s new for jmol bob hanson st. olaf college, northfield, mn 20 th biennial conference on...
TRANSCRIPT
What’s New for Jmol
Bob HansonSt. Olaf College, Northfield, MN
http://www.stolaf.edu/people/hansonr
20th Biennial Conference on Chemical EducationIndiana University
July 28, 2008
File Reading
Quality
Scripting
Objects
Structure Modification
Analysis
File Reading - Quality - Scripting
•Zap•Crystallographic Symmetry•Anisotropic Temp. Factors•Trajectory•Filter•Biomolecules
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Zap•Crystallographic Symmetry•Anisotropic Temp. Factors•Trajectory•Filter•Biomolecules
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Hermite Level
•Sheet Smoothing
•Antialiasing
•Calculate Aromatic
•Font Scaling
•POVRAY
•Translucency
•User-Defined Color Schemes
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Hermite Level
•Sheet Smoothing
•Antialiasing
•Calculate Aromatic
•Font Scaling
•POVRAY
•Translucency
•User-Defined Color Schemes
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Atom Expressions
•Display/Hide
•Background Mode
•Internal Rotation
•Script Queuing
•User-Defined Functions
•Navigate Mode
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Atom Expressions
•Display/Hide
•Background Mode
•Internal Rotation
•Script Queuing
•User-Defined Functions
•Navigate Mode
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Atom Expressions
•Display/Hide
•Background Mode
•Internal Rotation
•Script Queuing
•User-Defined Functions
•Navigation Mode
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Dipole
•Draw
•2D/3D Echo
•Isosurface MEP Color Mapping
•Plane/Sphere/Ellipsoid
•FunctionXY
•Complex Polyhedra
•JVXL-Compressed Isosurfaces
•LCAO Cartoons
•Molecular Orbitals
•Ramachandran/Quaternions
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Dipole
•Draw
•2D/3D Echo
•Isosurface MEP Color Mapping
•Plane/Sphere/Ellipsoid
•FunctionXY
•Complex Polyhedra
•JVXL-Compressed Isosurfaces
•LCAO Cartoons
•Molecular Orbitals
•Ramachandran/Quaternions
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Dipole
•Draw
•2D/3D Echo
•Isosurface MEP Color Mapping
•Plane/Sphere/Ellipsoid
•FunctionXY
•Complex Polyhedra
•JVXL-Compressed Isosurfaces
•LCAO Cartoons
•Molecular Orbitals
•Ramachandran/Quaternions
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Delete
•RotateSelected
•TranslateSelected
•Rotate/Spin Branch
•Load Append
•Minimize
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Delete
•RotateSelected
•TranslateSelected
•Rotate/Spin Branch
•Load Append
•Minimize
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Delete
•RotateSelected
•TranslateSelected
•Rotate Branch
•Load Append
•Minimize
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Data
•GetProperty
•Jmol Math
•User-Defined Variables
•Complex Measuring
•Write/Print
Objects - Structure Modification - Analysis
File Reading - Quality - Scripting
•Data
•GetProperty
•Jmol Math
•User-Defined Variables
•Complex Measuring
•Write/Print
Objects - Structure Modification - Analysis
http://chemapps.stolaf.edu/quaternions/PISEMA/pisema.htm
http://Jmol.ProteinExplorer.org
Thank You!