welcome to introduction to bioinformatics monday, 23 january 2012
DESCRIPTION
Welcome to Introduction to Bioinformatics Monday, 23 January 2012 Introduction to Molecular Biology. What do we talk about?. Determined by Questionnaires. Fraction of participants handing in questionnaires. Fraction of participants active on BioBIKE. Your Questions. - PowerPoint PPT PresentationTRANSCRIPT
Welcome toIntroduction to Bioinformatics
Monday, 23 January 2012
Introduction to Molecular Biology
What do we talk about?
Determined by Questionnaires
Fraction of participants handing in questionnaires
Fraction of participants active on BioBIKE
Your Questions…how to submit problem sets. Do we type up our responses separately and email them to you, submit them on Blackboard, or print and bring them to class?
I would like E and F
explained better
Study Question 6
Pick out the polymers… which organism specific?
Questionaire II.C
How do lipids self-assemble?
Study Question 5
Identify the protein in
Strategies of Life
Study Question 8Why isn't glycogen as varied as protein?
Study Question 11How do genes exert control over cellular processes?
Study Question 12How does entire the protein determine chymotrypsin function?
Questionaire IV.HWhat does all this have to do with bioinformatics?
Proteins
Study Question 13How does glycophorin enter a membrane?
Study Question 14What kinds of mutations affect protein functions?
Study Question 6
Pick out the polymers… which organism specific?
Questionaire II.C
How do lipids self-assemble?
Study Question 5
Identify the protein in
Strategies of Life
Why?
Study Question 4 What is an example of a household item that is hydrophobic
Study Question 5
Identify the protein in
Study Question 13
How do proteinsenter membranes?
I want to have a step by step understanding of how the lipids in soap interact with grime on our bodies
and wash away with water.
Study Question 4 What is an example of a
household item that is hydrophobic
Finger
Water
Finger
Water
Finger
Water
Finger
Water
Information+
Self-assembly
Structure+
Function
ProteinDNA
CGACCATCGCCTTAGTAC
Study Question 11
How do genes exert control over cellular processes?
Study Question 12
If the critical part of an enzyme is its active site, what's the use of the rest of the protein?
Study Question 12
If the critical part of an enzyme is its active site, what's the use of the rest of the protein?
Gly-193
Asp-102
Ser-195
His-57
Study Question 12
If the critical part of an enzyme is its active site, what's the use of the rest of the protein?
Gly-193
Asp-102
Ser-195
His-57
Study Question 12
If the critical part of an enzyme is its active site, what's the use of the rest of the protein?
Gly-193
Asp-102
Ser-195
His-57
http://library.thinkquest.org/C004535/cell_membranes.html
How does a membrane form?
Study Question 13How did glycophorin A gain its proper
position in the red blood cell membrane.
How does protein get inside?
Study Question 13How did glycophorin A gain its proper
position in the red blood cell membrane.
Study Question 13How did glycophorin A gain its proper
position in the red blood cell membrane.
Study Question 13How did glycophorin A gain its proper
position in the red blood cell membrane.
Study Question 13How did glycophorin A gain its proper
position in the red blood cell membrane.
Study Question 14
What kind of change in the amino acid sequence of a protein might cause it not to work?
Questionnaire IV.H
What does all this have to do with bioinformatics?
Information+
Self-assembly
Structure+
Function
ProteinDNA
CGACCATCGCCTTAGTAC
Study Question 11
How do genes exert control over cellular processes?
Structure
TranscriptomicsSystems
GenomicsTCTACTTATA TTCAATCCAC AGGGCTACACAAGAGTCTGT TGAATGAACA CATACATGGTTTCTGTCTGC TCTGACCTCT GGCAGCTTTC TGGATTTCGG AACTCTAGCC TGCCCCACTC GAACCTTAGT GACTTCTGCT ATACCAAAGT CTCCGTAAAC CTCTAACATG ATGTCAGCAA TGAATAAACT TTGTTAAAGG TACAAATGAA AAGAGTTTAA AGTTAAAAAC GAATTGCAGT AAACCTGTAT GGTTACATGA ACTGCCTAAA TTATATATTT TAAGAAATTA ATTGCAATTA CCCCAGCTGT CATTAAAAAG AGGCAAATAC GACAGCACTG ACCCTCAAGA AGGCACCGGC GCTGAAATTC CGCTGAGAGC AGAGTGGTAC CCCTGCACCA GGTCTTTCCT GTGGGCACTG ATGAATGACT GAACGAACGA TTGAATGAAA
Metabolomics
Proteomics
What does this have to do withbioinformatics?
TGAGACACATATTTTTGATATTCCAGTTGTTGCAATCGAATGTAAAACATATTTAGATCTTTAAATGTATGGTACATTCAAGATCCAACCTTCATTCTAGTGTTTAAAGAGAACTGATTTGTTTGCAGGGGCAGGAGGCTTTGGTTTAGGTTTTG
AAATGGCAGGCTTCTCTGTACCTTTATCTGTTGAAATTGATACCTGGGCTTGTGATACACTACGCTACAACCGCCCTGATTCAACAGTTATTCAAAATGATATCGGTAACTTTAGTACAGAAAATGACGTTAAGAATATCTGCAACTTTAAACCTGATATTATTATTGGCGGGCCTCCATGCCAGGG
ATTTAGTATTGCTGGGCCAGCCCAAAAAGATCCTAAAGATCCTAGAAATGGAATTATCAAACAAATCATATGATCAGAATAATCGCCGTTTAAATCCTCATAAAACTTTTATTCATCAACTTTGCACAATGGATAAAATTTCTTGAACCTAAAGCGTTTGTCATGGAAAACGTAAAAGGATTGCTATCAAGGAAAAATGCAGAAGGTTTTAAAGTTATAGATACTTCTCACTAAATATAAAGATTTTTTAGATCAGCAGCATTATGCAGAAAAATTTGATTCAAGACGACGGTACTGGTTTAACCAGCCAAATGTTCTTTCTACTACCCACCGTTTGGGCAAAACCTTTATTAAGAAAACATTTGAAGAACTTGGTTATTTTGTCGAAGTATGGGTTTTAAATGCTGCGGAATATGGCATTCCGCAAATTAGAGAACGTATTTTTATTGTTGGCAATAAAAAAGGTAAAGTACTAGGTATGAGTATTATACCTGCACTAACTTTGTGGGACGCAATATCAGACTTACCAGAACTTAATGCGCGTGAAGGAAGTGAAGAGCAACCCTATCATTTAAAACCTCAAAATACTTATCAGACTTGGGCTAGAAATGGTAGTGCTACGCTTTACAATCATGTTGCAATGGAACATTCTGACCGTTTAGTAGAACGTTTCCGGCATATAAAATGGGGTGAATCCAGTTCGGATGTATCTAAAGAACATGGAGCTAGACGACGTAGTGGTAATGGTGAATTATCAAACAAATCATATGATCAGAATAATCGCCGTTTAAATCCTCATAAACCGTCTCACACTATTGCTGCGTCATTCTATGCTAATTTTGTCCATCCTTTTCAACATCGAAATTTAACAGCCCGTGAAGGAGCTAGAATCCAATCTTTTCCAGATAACTATAGATTTTTTGGAAAAAAAACTGTCGTATCTCATAAACTATTGCATCGAGAAGAAAGATTTGATGAAAAATTTCTTTGTCAATATAATCAAATCGGTAATGCTGTACCCCCTCTTCTCGCTAAAGTAATTGCACATCATCTTCTAGAGAAATTAGAGTTATGCCAACAACTGATAGAAATCCTCTAGTGCATGGATCAAATCTTGAACAAAAAGAGAATCATCGTACAAAATACAGAGATACTGAAAGCAGGACTTTCCTTAGAGAAA TCAGAACTGAATATGACAAATGGCATAAAGCAAATATGAACCTGGTTGGACCAAAATCAGAAATTACTGACCAAGATGATTCAATTATTACTCAAAGAGTGGAACTTCTCACTAAATATAAAGATTTTTTAGATCAGCAGCATTATGCAGAAAAATTTGATTCAAGATCCAACCTTCATTCTAGTGTTTTAGAGACCATTTATAAAGTAAATCTTTAGACGACTAGACGACGTAGCATAATACGAGTCATAACGGCATATATGGCAGCCTCACTCATTTCTGGGAGACGCTCATAATCCTTACTGAGACGACGGTACTGGTTTAACCAGCCAAATGTTCTTTCTACTACCCACCGTTTGGGCAAAACCTGAAATTCTTGATTAGTACGCCGGATTACCTCAACATGAGCTTGAATCATCAGCCAAACAGAGAGCGCAAATTTATCACCGTCATAGCCGGAATCAACCCAGATGACTTCAACTTTTTCCAGTAATTCTGGACGCTCTTCTAACAGTTCCATCAAAGTATAGGCGGCAAGTAATCTTTCTCCAGCATTTGCTTCACTTACAACCACTTTTAACAAAAGTCCCAGACTATCAACCAAAGTTTGCCGCTTTCGTCCTTTTACCTTCTTGCCACCATCAAAACCGTACACATCCCCCTTTTTTCAGTCGTTTTTACCGACTGGCTGTCTGCCGCGATCGCCGTGGGTTGAGTTGACTTCCCCATTTTTTGACGAACTTGATCGCGCAAAGTATGATTCATTTCAGTTGAACTAGGAGGAAAATCCCCTGGAAGCATATCCCACTGACAACCTGTTTTCAGATGGTAGTAGATAGCGTTGCATACTTCTCGCATATCAGTTGTTCGGGGATGCCCACCGCATTTAGCGGGTGGAATCAAAGGAGCTAAAATTGCCCATTCTGAGTCATTAAGGTCTGTAGAATAAGACTTTCGTCTCATTGTTTCCTATGTAAATACACTCTACAAACAGTATCTTATCGCT
GCCTTTTTATCTTAGCTCTCCTTTAGATTTACTTTATAAATAGCCTCTTAGAAGAATTTCTTTATTATTTATTTAAAGATTTAGTACAAGATTTCGGGCAGAACGCTCTTATTGGTAAGTCACACACGTTCAAAGATATTTTCTTCGTACCACCAAAATATTCTGAAATGCTCAAGCGACCTTATGCGCGAATTGAGAGAAAAGATCATGATTTCGTAATTGGTGCAACTGTTCAAGCATCGCTTGAAGCAGCACCTCCTCCAGAACAAAACCA TGCTTGAGGGATCTTCACGCGCAGCAGAGGATTTAAAAGCGAGAAATCCTAACAGTTTATACCTTGTGGTTATGGAATGGATAAAACTGACCAATGATGTAAATTTACGAAAATATAAAGTTGATCAAATTTATGTACTACGTCAGCAAAAAAATACTGATAGAGAGTTTAGGTATGAGTCAACTTACATAAAAAAT
What isbioinformatics?
Michael MontagueJ Craig Venter Institute
Wednesday, January 26, 12:30(12:15 food)
Engineering West Building, Room 401
Science (17 Dec 2010) 330:1605
IV.G. How a greater ability to predict protein function from its primary structure would change the world we live in
Study Question 1What at root do enzymes control?