viruses i. what are they (and what aren’t they)? ii. virus structure and classification iii. viral...
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VirusesViruses
I. What are they (and what aren’t they)?I. What are they (and what aren’t they)?
II. Virus structure and classificationII. Virus structure and classification
III. Viral infectionIII. Viral infection
HerpesvirusHerpesvirus
Foot and Mouth Disease virusFoot and Mouth Disease virus
Ebola virusEbola virus
Characteristics of VirusesCharacteristics of Viruses
Somewhere between life and non-lifeSomewhere between life and non-life
Can’t reproduce or __________________ independentlyCan’t reproduce or __________________ independently
But But cancan direct living cells to do so for them direct living cells to do so for them
““___________________ intracellular parasites”___________________ intracellular parasites”
““Infectious particles” rather than “organisms”, “active” or Infectious particles” rather than “organisms”, “active” or
“inactive” rather than “alive” or “dead”.“inactive” rather than “alive” or “dead”.
Bacteriophage Phi X 174Bacteriophage Phi X 174
General StructureGeneral Structure
• Small -- _______________ nm Small -- _______________ nm
in diameterin diameter
• All have All have nucleocapsidnucleocapsid
composed of ______________ composed of ______________
and nucleic acidand nucleic acid
• Some have a phospholipid Some have a phospholipid
bilayer membrane (bilayer membrane (envelopeenvelope))
NucleocapsidNucleocapsid
DNA or RNADNA or RNA
CapsidCapsid
Enveloped virusEnveloped virusSpikeSpike
EnvelopeEnvelope
Viral envelopeViral envelope
• Common in animal and plant virusesCommon in animal and plant viruses
• Membrane is required for ______________Membrane is required for ______________
• Viral envelopes are actually portions of the Viral envelopes are actually portions of the
infected host cell _____________________ infected host cell _____________________
(viruses do not form their own)(viruses do not form their own)
• Often replace ______________ proteins Often replace ______________ proteins
with with viralviral glycoproteins glycoproteins
Nucleocapsid architectureNucleocapsid architecture
Two most common shapes: Two most common shapes: helicalhelical & &
icosahedralicosahedral. .
Both are regular, geometric shapes determined by Both are regular, geometric shapes determined by
the structure and orientation of proteins in the the structure and orientation of proteins in the
________________________________________________
Helical structure: Tobacco Mosaic Virus Helical structure: Tobacco Mosaic Virus
TMV is TMV is
composed of composed of
only_________ only_________
types of types of
molecules: a molecules: a
single ________ single ________
molecule and molecule and
one type of one type of
proteinprotein
Icosahedral structureIcosahedral structure
Note that in both of these architectures, only one or two types of Note that in both of these architectures, only one or two types of
proteins used. Means that the virus needs only one or two proteins used. Means that the virus needs only one or two
protein-coding ________________.protein-coding ________________.
Composed of Composed of only one or two only one or two different proteins different proteins + nucleic acid+ nucleic acid
AdenovirusesAdenoviruses -- non-enveloped icosahedral viruses which are generally -- non-enveloped icosahedral viruses which are generally
mild pathogens in humans, birds, etc. causing ___________________ mild pathogens in humans, birds, etc. causing ___________________
(‘pink eye’) and _________________ illnesses.(‘pink eye’) and _________________ illnesses.
Complex virusesComplex viruses
A number of types with somewhat more ___________ A number of types with somewhat more ___________ structuresstructures
One is typical bacteriophage, with icosahedral head, helical One is typical bacteriophage, with icosahedral head, helical tail, fibers for attachmenttail, fibers for attachment
Bacteriophage Bacteriophage
lambdalambda
Nucleic acid contentNucleic acid content
Viral genomes are very smallViral genomes are very small ___________ base pairs (enough to encode 3 or ___________ base pairs (enough to encode 3 or
4 proteins) to 200,000 bp4 proteins) to 200,000 bp
Small compared to bacteria (~10Small compared to bacteria (~1066 bp) and bp) and
human (~2 X 10human (~2 X 1099 bp). bp).
Characterized by __________________ genesCharacterized by __________________ genes
Viral genomic DNAViral genomic DNA
mRNA transcripts mRNA transcripts (overlapping)(overlapping)
Viral genomes. The genomes of viruses can be either _________ or
________ (or some use both at different stages in their life cycle)
Viral genomes. The genomes of viruses can be either _________ or
________ (or some use both at different stages in their life cycle)
Viral Infection -- OverviewViral Infection -- Overview
1) Adsorption1) Adsorption
2) ____________ (either of nucleocapsid or 2) ____________ (either of nucleocapsid or
of nucleic acid only)of nucleic acid only)
3a) Viral _______________ (lytic phase) 3a) Viral _______________ (lytic phase) oror
3b) 3b) IntegrationIntegration of viral genome into host cell of viral genome into host cell
genome (lysogenic phase)genome (lysogenic phase)
4) Exit from cell4) Exit from cell
AdsorptionAdsorption
Specific interaction of viral surface with cell Specific interaction of viral surface with cell
surface.surface.
This is the reason viruses only infect certain cell This is the reason viruses only infect certain cell
types, for example: types, for example: HIV only infects cells (such as T cells) with the CD4 HIV only infects cells (such as T cells) with the CD4
glycoprotein on their surface.glycoprotein on their surface.
Influenza virus (an orthomyxovirus) only infects Influenza virus (an orthomyxovirus) only infects
mucosal cells of upper ____________________ tract.mucosal cells of upper ____________________ tract.
Bacteriophages are highly ___________________ for Bacteriophages are highly ___________________ for
certain hosts (e.g. coliphages only infect certain hosts (e.g. coliphages only infect E. coliE. coli))
EntryEntry
1) ______________ of nucleic acid (e.g. T4 phage)1) ______________ of nucleic acid (e.g. T4 phage)
2) Entry of ___________ nucleocapsid (most 2) Entry of ___________ nucleocapsid (most
common in animal and plant viruses)common in animal and plant viruses)
EndocytosisEndocytosis::
Virus in vescicleVirus in vescicle
Vesicle and capsid break down, releasing nucleic acidVesicle and capsid break down, releasing nucleic acid
Cell membraneCell membrane
Membrane ____________ (only in enveloped viruses)Membrane ____________ (only in enveloped viruses)
OutOut
InIn
OutOut
InIn
OutOut
InIn
InIn
OutOut
Cell membraneCell membrane
Viral replicationViral replication
• Once inside, one of several things occurs, Once inside, one of several things occurs, depending on the virus.depending on the virus.
• However, the end result is always ________ However, the end result is always ________ ________________________________
• Involves:Involves:1) Replication of the nucleic acid1) Replication of the nucleic acid
2) Synthesis of capsid proteins2) Synthesis of capsid proteins
3) ________________ of nucleocapsids3) ________________ of nucleocapsids