vancomycin resistant enterococci (vre) screening quality ...€¦ · vancomycin-resistant...

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FIND OUT MORE RCPAQAP.COM.AU 1300 78 29 20 | [email protected] NATA Accredited Proficiency Testing Scheme Provider. Number 14863 Accredited to ISO/IEC 17043:2010 Background VRE are strains of Enterococci that have developed resistance to vancomycin, a glycopeptide antibiotic used to treat serious enterococcal infections. Vancomycin-resistant Enterococcus was first described in England in 1988 1 . Since then, it has increasingly become a major nosocomial pathogen worldwide. In Australia, it was reported that the percentage of E. faecium bacteraemia isolates resistant to vancomycin is now much higher than in all European countries 2 . Given the importance of accurately reporting VRE, the RCPAQAP Microbiology introduced the program “Enterococci for identification, antimicrobial susceptibility and van gene detection” in 2011. It was renamed in 2013 to become the “Vancomycin Resistant Enterococcus (VRE) Screening” program to be more aligned with the relevant guidelines 3 . Participants enrolled in this program are currently from Australia, New Zealand, Asia (Hong Kong, Thailand, Malaysia, China, Singapore) and Europe (Sweden, Spain and France). Enrolments grew from 52 participants in 2011 to 96 in 2018. Material/methods Four lyophilised simulated samples representing rectal swabs are sent twice a year. Once reconstituted, samples are suitable for enterococcal culture and/or molecular testing. Participants are asked to perform “VRE screen” testing as per their laboratory protocol. The RCPAQAP direct data entry is used to capture methods, results and overall comments. From 2014 to 2018, methods and algorithms used by participating laboratories to test for VRE were analysed and participant performance was assessed. Results From 2014 to 2018: Majority of participants used culture-based methods 25% to 31% of laboratories employed molecular methods and/or with culture/other methods Greater than 90% reported correct responses Figure 1. 2014-2018 enrolled participants, methods 0 10 20 30 40 50 60 70 80 90 100 Enrolled Participants Culture-based Molecular and/or culture/other methods Linear (Enrolled Participants) 2014-1 2014-2 2015-2 2015-1 2016-2 2016-1 2017-2 2017-1 2018-2 2018-1 Table 1. Media used 2018 Survey 2 Media Number of user/s Bile esculin agar + vancomycin 1 Blood Agar 1 Blood Agar,Chromogenic agar 4 Blood Agar,Chromogenic agar,MAC,VRE broth 1 Blood Agar,Chromogenic agar,VRE broth 2 Blood Agar,Mueller Hinton 2 Blood Agar,VRE agar 1 Blood Agar,VRE broth 1 Chromogenic agar 41 Chromogenic agar,CNA 3 Chromogenic agar,GrpB broth 1 Chromogenic agar,Mueller Hinton 2 Chromogenic agar,VRE broth 18 Mueller Hinton,VRE agar 1 NEGRAM AGAR,MAC 1 VRE agar 3 VRE agar,VRE broth 3 VRE broth 1 VRE broth,Azt plate with Vanc disc 1 Table 2. Molecular detection methods used 2018 Survey 2 Method Number of user/s AMR direct flow chip kit 1 Ausdiagnostics: Staphylococcus + VRE (8 well) 1 BDMAX ExK DNA-3 and BioGX 1 GeneXpert VanA/VanB 12 Inhouse (no details) 2 Inhouse (Syto 9 Fluorescence) 1 Inhouse PCR (gel detection) 2 Inhouse Real time PCR 5 Roche LC VRE detection 3 Vancomycin Resistant Enterococci (VRE) screening quality assurance program: a five-year review of methods and performance Table 3. Items sent 2014-2018 Item number Sample* content/s Characteristic/s 2014:3:11A E. faecium VRE, vanB 2014:3:11B E. faecium VRE, vanA 2014:3:11C E. faecalis Non-VRE 2014:3:11D E. faecium (duplicate of 11B) VRE, vanA 2014:7:11A E. faecium VRE, vanB 2014:7:11B E. faecium VRE, vanA 2014:7:11C E. faecalis VRE, vanA 2014:7:11D E. faecium VRE, vanB 2015:3:11A E. faecium VRE, vanB 2015:3:11B E. faecalis Non-VRE 2015:3:11C E. faecium VRE, vanA 2015:3:11D E. faecalis VRE, vanB 2015:7:10A E. faecalis Non-VRE 2015:7:10B E. faecium VRE, vanB 2015:7:10C Leuconostoc lactis Vancomycin resistant gram-positive coccus, No VRE 2015:7:11D E. faecium VRE, vanA 2016:3:11A Pediococcus pentosaceus Vancomycin resistant gram-positive coccus, No VRE 2016:3:11B E. faecium VRE, vanA 2016:3:11C E. faecalis VRE, vanA 2016:3:11D E. faecium and E. faecalis VRE, E. faecalis (vanB); E. faecium (vanA) 2016:7:10A E. faecium Non-VRE 2016:7:10B E. faecium VRE, vanB 2016:7:10C E. faecalis VRE, vanB 2016:7:10D E. coli, C. freundii and K. pneumoniae No VRE 2017:3:11A E. faecium VRE, vanA; Teicoplanin R (MIC 24mg/L); Vancomycin R (MIC >256 mg/L) 2017:3:11B E. faecalis Non-VRE 2017:3:11C E. faecalis (duplicate of 11B) Non-VRE 2017:3:11D E. faecium VRE, vanB; Teicoplanin and vancomycin R (MIC >256 mg/L) 2017:7:10A E. faecalis Non-VRE 2017:7:10B E. faecium VRE, vanB 2017:7:10C E. faecalis (duplicate of 10A) Non-VRE 2017:7:10D E. faecium (duplicate of 10B) VRE, vanB 2018:3:11A E. faecalis Non-VRE 2018:3:11B E. faecalis Non-VRE 2018:3:11C E. faecalis VRE, vanA 2018:3:11D E. faecalis VRE, vanB 2018:7:10A E. faecium Non-VRE 2018:7:10B E. faecium VRE, vanB 2018:7:10C E. faecalis VRE, vanB Figure 2. 2014-2018 VRE screening QAP performance 90 91 92 93 94 95 96 97 98 99 100 Concordance (%) Item Number 2014:3:11A 2014:3:11B 2014:3:11C 2014:3:11D 2014:7:11A 2014:7:11B 2014:7:11C 2014:7:11D 2015:3:11A 2015:3:11B 2015:3:11C 2015:3:11D 2015:7:10A 2015:7:10B 2015:7:10C 2015:7:11D 2016:3:11A 2016:3:11B 2016:3:11C 2016:3:11D 2016:7:10A 2016:7:10B 2016:7:10C 2016:7:10D 2017:3:11A 2017:3:11B 2017:3:11C 2017:3:11D 2018:3:11A 2018:3:11B 2018:3:11C 2018:3:11D 2017:7:10A 2017:7:10B 2017:7:10C 2017:7:10D 2018:7:10A 2018:7:10B 2018:7:10C 2018:7:10D Conclusions 1. The choice of methods used, culture-based and/or molecular/other, still vary as per consideration of laboratories’ relevant guidelines, test sensitivity, complexity, turnaround time and cost 4 . 2. Over the course of five years, whilst false positive and false negative results remain an issue for some participants, there was a high level of concordance. References 1. Uttley, A.H.C., C.H. Collins, J. Naidoo, and R. C. George. 1988. Vancomycin-resistant enterococci. Lancet i:57-58 2. Coombs G, Bell JM, Daley D, Collignon P, Cooley L, Gottlieb T, Iredell J, Kotsanas D, Nimmo G and Robson J on behalf of the Australian Group on Antimicrobial Resistance and Australian Commission on Safety and Quality in Health Care. Australian group on Antimicrobial Resistance Sepsis Outcomes Programs: 2017 Report. Sydney: ACSQHC; 2019 3. Australian Guidelines for the Prevention and Control of Infection in Healthcare, Canberra: National Health and Medical Research Council (2019) 4. Faron, Matthew L., Nathan A. Ledeboer, and Blake W. Buchan. 2016.“Resistance Mechanisms, Epidemiology, and Approaches to Screening for Vancomycin-Resistant Enterococcus in the Health Care Setting.” Journal of Clinical Microbiology 54 (10): 2436–47 Microbiology, The Royal College of Pathologists of Australasia Quality Assurance Programs (RCPAQAP) St Leonards, NSW, Australia. Norvie Aquino, Elizabeth Haremza, Debra Walker, Katherine Ryan, Allan Elsner, Juliet Elvy *Sample/s would have normal flora included.

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FIND OUT MORE RCPAQAP.COM.AU1300 78 29 20 | [email protected] Accredited Proficiency Testing Scheme Provider. Number 14863 Accredited to ISO/IEC 17043:2010

BackgroundVRE are strains of Enterococci that have developed resistance to vancomycin, a glycopeptide antibiotic used to treat serious enterococcal infections.

Vancomycin-resistant Enterococcus was first described in England in 19881. Since then, it has increasingly become a major nosocomial pathogen worldwide. In Australia, it was reported that the percentage of E. faecium bacteraemia isolates resistant to vancomycin is now much higher than in all European countries2.

Given the importance of accurately reporting VRE, the RCPAQAP Microbiology introduced the program “Enterococci for identification, antimicrobial susceptibility and van gene detection” in 2011. It was renamed in 2013 to become the “Vancomycin Resistant Enterococcus (VRE) Screening” program to be more aligned with the relevant guidelines3. Participants enrolled in this program are currently from Australia, New Zealand, Asia (Hong Kong, Thailand, Malaysia, China, Singapore) and Europe (Sweden, Spain and France). Enrolments grew from 52 participants in 2011 to 96 in 2018.

Material/methodsFour lyophilised simulated samples representing rectal swabs are sent twice a year. Once reconstituted, samples are suitable for enterococcal culture and/or molecular testing. Participants are asked to perform “VRE screen” testing as per their laboratory protocol.

The RCPAQAP direct data entry is used to capture methods, results and overall comments. From 2014 to 2018, methods and algorithms used by participating laboratories to test for VRE were analysed and participant performance was assessed.

ResultsFrom 2014 to 2018:• Majority of participants used culture-based methods • 25% to 31% of laboratories employed molecular methods and/or with culture/other methods• Greater than 90% reported correct responses

Figure 1. 2014-2018 enrolled participants, methods

0

10

20

30

40

50

60

70

80

90

100

Enrolled Participants Culture-based Molecular and/or culture/other methods Linear (Enrolled Participants)

2014-1 2014-2 2015-22015-1 2016-22016-1 2017-22017-1 2018-22018-1

Table 1. Media used 2018 Survey 2

Media Number of user/s

Bile esculin agar + vancomycin 1

Blood Agar 1

Blood Agar,Chromogenic agar 4

Blood Agar,Chromogenic agar,MAC,VRE broth 1

Blood Agar,Chromogenic agar,VRE broth 2

Blood Agar,Mueller Hinton 2

Blood Agar,VRE agar 1

Blood Agar,VRE broth 1

Chromogenic agar 41

Chromogenic agar,CNA 3

Chromogenic agar,GrpB broth 1

Chromogenic agar,Mueller Hinton 2

Chromogenic agar,VRE broth 18

Mueller Hinton,VRE agar 1

NEGRAM AGAR,MAC 1

VRE agar 3

VRE agar,VRE broth 3

VRE broth 1

VRE broth,Azt plate with Vanc disc 1

Table 2. Molecular detection methods used 2018 Survey 2

Method Number of user/s

AMR direct flow chip kit 1

Ausdiagnostics: Staphylococcus + VRE (8 well) 1

BDMAX ExK DNA-3 and BioGX 1

GeneXpert VanA/VanB 12

Inhouse (no details) 2

Inhouse (Syto 9 Fluorescence) 1

Inhouse PCR (gel detection) 2

Inhouse Real time PCR 5

Roche LC VRE detection 3

Vancomycin Resistant Enterococci (VRE) screening quality assurance program: a five-year review of methods and performance

Table 3. Items sent 2014-2018Item number Sample* content/s Characteristic/s

2014:3:11A E. faecium VRE, vanB

2014:3:11B E. faecium VRE, vanA

2014:3:11C E. faecalis Non-VRE

2014:3:11D E. faecium (duplicate of 11B) VRE, vanA

2014:7:11A E. faecium VRE, vanB

2014:7:11B E. faecium VRE, vanA

2014:7:11C E. faecalis VRE, vanA

2014:7:11D E. faecium VRE, vanB

2015:3:11A E. faecium VRE, vanB

2015:3:11B E. faecalis Non-VRE

2015:3:11C E. faecium VRE, vanA

2015:3:11D E. faecalis VRE, vanB

2015:7:10A E. faecalis Non-VRE

2015:7:10B E. faecium VRE, vanB

2015:7:10C Leuconostoc lactis Vancomycin resistant gram-positive coccus, No VRE

2015:7:11D E. faecium VRE, vanA

2016:3:11A Pediococcus pentosaceus Vancomycin resistant gram-positive coccus, No VRE

2016:3:11B E. faecium VRE, vanA

2016:3:11C E. faecalis VRE, vanA

2016:3:11D E. faecium and E. faecalis VRE, E. faecalis (vanB); E. faecium (vanA)

2016:7:10A E. faecium Non-VRE

2016:7:10B E. faecium VRE, vanB

2016:7:10C E. faecalis VRE, vanB

2016:7:10D E. coli, C. freundii and K. pneumoniae No VRE

2017:3:11A E. faecium VRE, vanA; Teicoplanin R (MIC 24mg/L); Vancomycin R (MIC >256 mg/L)

2017:3:11B E. faecalis Non-VRE

2017:3:11C E. faecalis (duplicate of 11B) Non-VRE

2017:3:11D E. faecium VRE, vanB; Teicoplanin and vancomycin R (MIC >256 mg/L)

2017:7:10A E. faecalis Non-VRE

2017:7:10B E. faecium VRE, vanB

2017:7:10C E. faecalis (duplicate of 10A) Non-VRE

2017:7:10D E. faecium (duplicate of 10B) VRE, vanB

2018:3:11A E. faecalis Non-VRE

2018:3:11B E. faecalis Non-VRE

2018:3:11C E. faecalis VRE, vanA

2018:3:11D E. faecalis VRE, vanB

2018:7:10A E. faecium Non-VRE

2018:7:10B E. faecium VRE, vanB

2018:7:10C E. faecalis VRE, vanB

Figure 2. 2014-2018 VRE screening QAP performance

90

91

92

93

94

95

96

97

98

99

100

Con

cord

ance

(%)

Item Number

2014

:3:11

A20

14:3

:11B

2014

:3:11

C20

14:3

:11D

2014

:7:11

A20

14:7

:11B

2014

:7:11

C20

14:7

:11D

2015

:3:11

A20

15:3

:11B

2015

:3:11

C20

15:3

:11D

2015

:7:10

A20

15:7

:10B

2015

:7:10

C20

15:7

:11D

2016

:3:11

A20

16:3

:11B

2016

:3:11

C20

16:3

:11D

2016

:7:10

A20

16:7

:10B

2016

:7:10

C20

16:7

:10D

2017

:3:11

A20

17:3

:11B

2017

:3:11

C20

17:3

:11D

2018

:3:11

A20

18:3

:11B

2018

:3:11

C20

18:3

:11D

2017

:7:10

A20

17:7

:10B

2017

:7:10

C20

17:7

:10D

2018

:7:10

A20

18:7

:10B

2018

:7:10

C20

18:7

:10D

Conclusions1. The choice of methods used, culture-based and/or molecular/other, still vary as per

consideration of laboratories’ relevant guidelines, test sensitivity, complexity, turnaround time and cost4.

2. Over the course of five years, whilst false positive and false negative results remain an issue for some participants, there was a high level of concordance.

References1. Uttley, A.H.C., C.H. Collins, J. Naidoo, and R. C. George. 1988. Vancomycin-resistant enterococci. Lancet i:57-582. Coombs G, Bell JM, Daley D, Collignon P, Cooley L, Gottlieb T, Iredell J, Kotsanas D, Nimmo G and Robson J on behalf of the Australian Group on Antimicrobial Resistance and Australian Commission on Safety and Quality in Health Care. Australian group on Antimicrobial Resistance Sepsis Outcomes Programs: 2017 Report. Sydney: ACSQHC; 20193. Australian Guidelines for the Prevention and Control of Infection in Healthcare, Canberra: National Health and Medical Research Council (2019)4. Faron, Matthew L., Nathan A. Ledeboer, and Blake W. Buchan. 2016.“Resistance Mechanisms, Epidemiology, and Approaches to Screening for Vancomycin-Resistant Enterococcus in the Health Care Setting.” Journal of Clinical Microbiology 54 (10): 2436–47

Microbiology, The Royal College of Pathologists of Australasia Quality Assurance Programs (RCPAQAP) St Leonards, NSW, Australia.

Norvie Aquino, Elizabeth Haremza, Debra Walker, Katherine Ryan, Allan Elsner, Juliet Elvy

*Sample/s would have normal flora included.