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Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio
Ahn, A.-C.; Meier-Kolthoff, J.P.; Overmars, L.; Richter, M.; Woyke, T.; Sorokin, D.Y.; Muyzer,G.Published in:PLoS ONE
DOI:10.1371/journal.pone.0173517
Link to publication
Citation for published version (APA):Ahn, A-C., Meier-Kolthoff, J. P., Overmars, L., Richter, M., Woyke, T., Sorokin, D. Y., & Muyzer, G. (2017).Genomic diversity within the haloalkaliphilic genus Thioalkalivibrio. PLoS ONE, 12(3), [e0173517].https://doi.org/10.1371/journal.pone.0173517
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Download date: 06 Jul 2020
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9987
83
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92
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99
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8298
86
6099
99
63
82
82
94
79
9995
0.05
ALJ11ALJ2ALJ8ALJ12T
ALgr1ALRhARh4ALJ4ALJ5AL5ALJ9
ALJ15K90mix ALJ20 ALJ21AL21HL-Eb18ARh3
ARh2T
ARh5ALJ3 ALD1ALJ10
ALJTALE25ALE21 ALE12ALE28ALE30ALE31ALE17ALE16ALE27ALE9ALE22
ALJ16ALJ1
ALJ6ALJ7
AKL11ALE14ALE6
AKL19ALMg11ALM2T
AKL9AKL10AKL3ALMg2ALMg13-2
AKL12AKL6AKL7AKL8AL2T
ALMg3ALMg9
AKL17ALgr5
ALR17-21HL17T
ALJ24ALSr1
ALE18ALE10
ALE11ALE20ALE23ALgr3ALE19
ARh 1T
ALEN2T
Trs. sibirica A12T
E. haloalkaliphila ATCC 51935T
ALJ17HL-EbGr7 T
ARhD 1T
ALJDT
Ths. halophila HL3T
H. halophila SL1T A. ehrlichii MLHE-1T
atpD
ALE27ALE22ALE28ALE25ALE21ALE30ALE12ALE17ALE9ALE16ALE31ALJT
AKL19ALE14ALE6ALMg11AKL6AKL7AKL10ALM2T
ALMg13-2AKL12AKL3AKL9ALMg2ALMg3AKL8ALMg9AL2T
ALJ16ALJ1ALJ6ALJ7
AKL11ALD1ALJ10ALJ3ARh3ARh2T
ARh5ALJ21AL21ALJ20HL-Eb18 K90mix
AL5ALJ9ALJ5ALJ4ARh4ALgr1 ALJ2ALRhALJ12T
ALJ8 ALJ11ALJ15
ALSr1ALJ24
ALE23ALE19 ALgr3ALE18ALE10ALE20ALR17-21HL17T
ALE11AKL17ALgr5
ARh 1T
ALEN2T
Trs. sibirica A12T
E. haloalkaliphila ATCC 51935T
ALJ17HL-EbGr7T
ARhD 1T
ALJDT Ths. halophila HL3T
H. halophila SL1T
A. ehrlichii MLHE-1 T
100
100
100
100
100
100
68100
100
99
95
10092
10099
100
97100
100
100
80100
100
10081
100
79
78
100
100
100
100
100
88
72
91
7269
92
10098
66
99
66
98
100
100
100
100
100 67
66
82
100
100
6399
0.05
clpA
ALMg9AKL7ALMg3AL2T
ALMg2AKL3AKL9AKL8ALMg13-2AKL12AKL10AKL6
ALM2T
ALMg11ALE14ALE6AKL19
ALE27ALE22ALE17ALE16ALE30ALE12ALE31ALE9ALE28ALE25ALE21
ALJTALJ16
ALJ1ALJ6ALJ7
AKL11ARh2T
ARh5ARh3ALD1ALJ10ALJ3HL-Eb18K90mixALJ21AL21ALJ20ALJ5AL5ALJ4ARh4
ALgr1ALJ2ALJ9ALJ15ALRhALJ12T
ALJ8ALJ11
ALJ24ALSr1
AKL17ALgr5
ALR17-21ALE11HL17T
ALE19ALgr3ALE20ALE18ALE23ALE10
ARh 1T
ALEN2T
E. haloalkaliphila ATCC 51935T
Trs. sibirica A12T
ALJDT
ARhD 1T
ALJ17HL-EbGr7T
Ths. halophila HL3T
H. halophila SL1T A. ehrlichii MLHE 1T
10054
100
10085
100
100
10098
8572
77
100
90
71
69
99
82
100
100100
100
100
100
100
99
99
7796
95
98
100
100
99
100
83
81
80
97
97
99
616181
100
100
99
100
87
100
99
96
7278
81
6073
0.1
dnaJ
AKL8AL2T
ALMg3ALMg9AKL10AKL6AKL7AKL12AKL3AKL9ALMg13-2ALMg2ALM2T
ALMg11AKL19ALE12
ALE31ALE30ALE17
ALE28ALE16ALE27ALE22ALE9ALE25ALE21
ALE14ALE6
ALJ1ALJ6ALJ7ALJT
ALJ16AKL11 ALD1ALJ10ALJ3
ARh3ARh2T
ARh5ALJ21AL21ALJ20HL-Eb18K90mix ALJ5AL5ALJ4ARh4ALJ9ALRhALgr1ALJ15ALJ2ALJ12T
ALJ8ALJ11ALJ24ALSr1
AKL17ALgr5ALR17-21HL17T
ALE23ALE19ALE18ALE10ALE11ALE20 ALgr3
ARh 1T
ALENT
Trs. sibirica A12T
E. haloalkaliphila ATCC 51935T
ALJDT ARhD 1T
ALJ17HL-EbGr7T
Ths. halophila HL3T
H. halophila SL1T
A. ehrlichii MLHE-1T
10077
98
100
62100
100
97
100100
7398
100
100
659295
100100
100
100
100100
100
100
100
9494
65
80
66
100
100
100
100100
100
100
10060
86
88
60
100
91
99
95
100
97
100
77
67
100
100
100
72100
100
61
94
0.1
gyrB
AKL6AKL7AL2T
ALMg9ALMg3AKL8AKL12ALMg13-2ALMg2AKL10AKL3AKL9
ALM2T
ALMg11AKL19ALE14ALE6ALE9ALE17ALE25ALE21ALE31ALE30ALE28ALE12ALE16ALE27ALE22
ALJ10ALD1ALJ3HL-Eb18K90mixARh3ARh2T
ARh5ALJ20ALJ21 AL21
AKL11ALgr1 ALRh ALJ2 ALJ15ALJ8ALJ11ALJ12T
ARh4ALJ4ALJ5AL5ALJ9ALJ16ALJTALJ1ALJ6ALJ7
ALSr1ALJ24ALR17-21AKL17ALgr5HL17T
ALgr3ALE19ALE11ALE23ALE20ALE18ALE10
ARh 1T
ALEN2T
Trs. sibirica A12T
E. haloalkaliphila ATCC 51935T
ALJDT
ARhD 1T
ALJ17HL-EbGr7T
Ths. halophila HL3T H. halophila SL1T
A. ehrlichii MLHE-1T
10063
100
100
94
100
100
10095
99
75
94
96
98
100100
100
100
100
100
100
99
97
96100
100
100
100
100
65
65
90
99
81
100
97
100
75
72
83
69
100
99
100
89
97
0.1
rpoD
ALE31ALE22ALE27ALE25ALE21ALE17ALE28ALE30ALE16ALE9ALE12
ALJ1ALJ6ALJ7
AKL19ALE14ALE6ALMg11
AKL8AL2T
ALMg9ALM2T
AKL7AKL6ALMg2AKL10ALMg13-2AKL3AKL12ALMg3AKL9ALJT
ALJ16AKL11
ARh2T
ARh5ARh3
ALJ21AL21ALJ20ALJ15K90mix HL-Eb18ALJ3ALD1ALJ10AL5ALJ9ALJ5ALJ4ARh4ALJ8ALJ11ALJ12T
ALgr1ALJ2ALRh
ALJ24ALSr1
AKL17ALE21HL17T
ALR17-21ALE19
ALE20ALE23ALgr3ALE11ALE18ALE10ARh 1T
ALEN2T
Trs. sibirica A12 T
E. haloalkaliphila ATCC 51935T
ARhD 1T
ALJDT
ALJ17HL-EbGr7T
H. halophila SL1T
A. ehrlichii MLHE-1T
Ths. halophila HL3T
100100
100
6299
99
100
100
9599
89
75
64
81
77
100
100
100
95100
100
89
96
100
100
100
89
9990
96
100
100
100
89
98
98
100
100
100
7484
6688
100
99
100
9894
75
100
77
0.1
rpoH
AKL10AL2T
ALMg13-2AKL12ALMg2AKL3AKL9ALMg3ALM2T
AKL6ALMg9AKL8AKL7
ALMg11ALJ1ALJ6ALJ7
ALE14ALE6
AKL19ALE9ALE28ALE17ALE30ALE12ALE27ALE22 ALE31ALE25ALE21ALE16
ALJ16ALJT
ARh2T
ARh5ARh3
ALJ3ALD1ALJ10
AKL11ALJ21AL21ALJ20HL-Eb18K90mix ALJ2AL5ALJ9ALJ5ALJ4ARh4ALgr1ALJ12T
ALJ8ALJ11ALRhALJ15
ALJ24ALSr1ALR17-21AKL17ALgr5HL17T
ALE18ALE10ALE11ALE20ALE23ALE19ALgr3ARh 1T
ALEN2T
Trs. sibirica A12T
E. haloalkaliphila ATCC 51935T
ALJDT
ARhD 1T
ALJ17HL-EbGr7T
Ths. halophila HL3T
A. ehrlichii MLHE-1T
H. halophila SL1T
100
95
9899
100
100
74100
100
76100
68
100
65
100
100
8599
100
100
6186
100
100
78
98
100
99
70
99
100
6999
100
99
93
99
92
79
100100
100
100
77
63
0.2
rpoS
ALMg2AKL9AKL3ALMg3AKL10 AKL12ALMg13-2ALMg9AL2T
ALM2T
AKL6AKL8AKL7ALMg11
AKL19ALE14ALE6
ALJ1ALJ7ALJ6
ALE27ALE22ALE28ALE25ALE21ALE16ALE12ALE17ALE9
ALE31ALE30
ALJ16ALJTAKL11
ARh2T
ARh5ARh3ALD1ALJ10ALJ3
ALJ21AL21ALJ20HL-Eb18K90mix
AL5ALJ9ALJ5 ALJ4ARh4ALJ2ALgr1ALRhALJ12T
ALJ8ALJ11ALJ15
ALJ24ALgr5ALSr1AKL17ALE18ALE10ALgr3ALE20ALR17-21ALE11HL17T
ALE23ALE19
ARh 1T
ALEN2T
Trs. sibirica A12T
E. haloalkaliphila ATCC 51935T
ALJ17HL-EbGr7T
ARhD 1T
ALJDT Ths. halophila HL3T
H. halophila SL1T
A. ehrlichii MLHE-1T
99
99
100
91100
100
908696
77
67
100
99
99
100
100
67100
100
100
61
83100
100
71
100
67
62
76
87
100
100
100
100
97
100
100
100
64
75
100
99
98
93
100
64
64
100
99
9960
87
100
0.1
secF