using bizint smart charts with gene sequence databases · 2 sample sequence data report show a...

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Using BizInt Smart Charts with Gene Sequence Databases

BizInt Smart Charts 2012

PIUG Biotech 2012John Willmore, VP Product DevelopmentFebruary 7, 2012 – Boston, MA

BizInt Smart Charts software helps you create, customize and distribute tabular reports…… combining data from patents, drug pipeline, clinical trials, and gene sequence searches.


Search results or alerts

Easy-to-read summary table

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Sample sequence data report

Show a sample report with sequence data

Bibliographic Data

Sequence Data


Sequence Data

Query Results

P d b STN P B Mi P Patent databases: STN, PatBase, MicroPatent, Questel (QPAT, Qweb, Orbit), Delphion, IDdb, Integrity, Thomson Pharma IP, TotalPatent, Thomson Innovation

Non-patent literature databases: Embase


Non patent literature databases: Embase, Biosis, Medline, Chemical Abstracts, etc.

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Gene sequence databases:

GenomeQuest: GQPAT, GeneSeq

STN: USGENE, DGENE, PCTGEN

Gene sequence databases:


Generating Sequence IDs from Source Data

Different ways to present Sequence ID

Combine sequence number and publication Combine sequence number and publication number to create Sequence IDs

Improves ability to find “duplicates” across databases and queries

TIP: Include AN in USGENE/PCTGEN


TIP: Include AN in USGENE/PCTGENInclude PSL and DESC in DGENE

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Generating Sequence IDs from Source Data


Combining without removing duplicates

BizInt Smart Charts usually keeps only one copy of each record when combining chartscopy of each record when combining charts

A sequence may be retrieved by several queries, and you want to keep each result

New option to combine without removing duplicate records


p

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From February 2010 “Tips and Tricks”

Show alignment and query results

TIP: Select Alignment columnChange font to Courier New 8pt


Change font to Courier New 8pt

Better “Fixed Width” text handling for Alignment

New text property “Fixed Width”

Changes font to fixed width

Preserves spaces when exporting to HTML


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Fixed Width Alignment in Microsoft Word

[show alignment in Word export]

[show export dialog, call out new exports]

[show new Optimized for Excel export]TIP: “fixed width” text doesn’t work well in the new Excel export


New Acrobat and Excel exports in Version 3.4

N t Fi d Width d ’t k ll i th


Note: Fixed Width doesn’t work well in the optimized export (we’re working on it)

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V i 1 0 l d i l 2011 Version 1.0 released in late 2011.

Information from related records is displayed in a single “Reference Row”.

A representative value is chosen from among all cells in a group


cells in a group.

Available as a separate utility working with patent, drug pipeline, and clinical trial reports.

Reference Rows: key features


Reference Row

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Reference Rows: a sample patent report

A Reference Row summarizes related records from several sources.


Reference Rows: a sample patent report

Each representative cell in a Reference Row is selected from one

of the source documents.


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Reference Rows: patent report

Smart Charts table corresponding to HTML.

The check marks indicated the selected cell in the software.




A cell is selected based on your ranking of the databases…

skipping empty cells until a value is found (as in Claims here).


( )

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You can specify a more specific rule to select the reprentative cell,

including a database ranking just for


a particular column.



And you can always override the rules and select a specific cell.


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Reference Rows: sequence report issues

Problem 1: This family has 48 sequence records

in the report!

Proposed solution: Group b d bli ti


based on publication or sequence ID


[show problem with sequence data]Problem 2: Selecting a

[call out for all sequences in a family grouped]

[call out for selecting representative % identetc.]

Problem 2: Selecting a representative value loses

meaningful information


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P d S l ti 2 Proposed Solution 2: New rule to summarize

values in a Reference Row


Provides Vantage Point tools to normalize

Vantage Point –Smart Charts Edition

Provides Vantage Point tools to normalize and enhance BizInt Smart Charts reports.

Scheduled for release in mid 2012; many features are working now.

Combined with Reference Rows, helps


pyou create deduplicated & normalizedmulti-database reports.

Key is the XML Smart Data Exchange

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XML Smart Data Exchange




Enhance reports – normalize, filter & cluster

Filtered Assignees

Normalized names


Technology clusters

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Come to our tableto learn

!

TO LEARN MORE:

Visit our Table in the Exhibits Hall

Free Trial and documentation on our website


more! Free Trial and documentation on our websitewww.bizcharts.com

Webinars offered monthly

using bizint smart charts with gene sequence databases · 2 sample sequence data report show a...

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