understanding trees. pre-test which mammal is the pig more closely related to, cow or camel? which...

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Understanding Trees

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Page 1: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

Understanding Trees

Page 2: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

Pre-test

Which mammal is the pig more closely related to, cow or camel?

Which mammal here is the most primitive?

Fig. 4.8b

Page 3: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

•Common ancestor•Root of the tree

•Nodes•Terminal taxa (tips)•Branches

Page 4: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

Phylograms and Cladograms

Page 5: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

Trees can be built for extinct organisms…

Page 6: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

Trees can include lineage “persistence”

Page 7: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

Some trees show timing of events

Page 8: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

Most trees today are built for extant

organisms only…

Page 9: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

Tree Rules

1. Read the nodes, remember they swivel2. Bifurcation rule3. Monophyly snip rule4. Sibling ≠ Ancestor5. Sister lineage snip rule and ages

Page 10: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

1. Read the nodes, remember they swivel!

Don’t read left to right or top to bottomRead the nodes, and the nodes swivel

Page 11: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

Read the nodes

A B C D

e f

g

For cladograms, some information about timing (e and f after g)

Page 12: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

For phylograms,a little more informationabout timing

Page 13: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

This tree is ladderized right…Swivel the nodes to make it ladderized leftRedraw it with lungfish at the top

Page 14: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b
Page 15: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b
Page 16: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b
Page 17: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

Assignment

Page 18: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

2. Bifurcation Rule

• Can only have one divergence event at a time.

• Can’t have two divergence events at the same time (snap two fingers at once)

Page 19: Understanding Trees. Pre-test Which mammal is the pig more closely related to, cow or camel? Which mammal here is the most primitive? Fig. 4.8b

Breaking the Bifurcation Rule:Hard polytomies and Soft polytomies

Cichlids