ucd conway publications 2012-2013 (extract from president's report)

Report of President 2012/2013 - Conway

Institute

>> Books

>> Book Chapters

>> Books Edited

>> Peer Reviewed Journals

>> Other Journals

>> Conference Publications

>> Published Reports

>> Other Publications

Books

Professor Ronan O'Connell

Willaims NS, Bulstrode C, O'Connell PR (2013) Bailey and Love's Short Practice of

Surgery. Boca Raton: CRC Press.

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Book Chapters

Professor Mohamed Al-Rubeai

Browne S. M. and Al-Rubeai M. (2013) 'Blood cell bioprocessing: The haematopoietic

system and current status of in-vitro production of red blood cells' In: Al-Rubeai M. and

Naciri M (eds). Stem Cells and Cell Therapy. Dordrecht: Springer.

Professor Mark Crowe

Mullen, MP; Cooke, DJ; Crowe, MA (2013) 'Structural and functional roles of FSH and

LH as glycoproteins regulating reproduction in mammalian species' In: Jorge Vizcarra

(eds). Gonadotropin. Rijeka, Croatia: In Tech. , pp.155-180

Crowe, MA; Mullen, MP (2013) 'Regulation and function of gonadotropins throughout

the bovine oestrous cycle' In: Jorge Vizcarra (eds). Gonadotropin. Rijeka, Croatia: In

Tech. , pp.143-154

Crowe, MA; Mullen, MP (2013) 'Relative roles of FSH and LH in stimulation of

effective follicular responses in cattle' In: Jorge Vizcarra (eds). Gonadotropin. Rijeka,

Croatia: In Tech. , pp.125-142

Crowe, MA; Mullen, MP (2013) 'Regulation and differential secretion of gonadotropins

during post partum recovery of reproductive function in beef and dairy cows' In: Jorge

Vizcarra (eds). Gonadotropin. Rijeka, Croatia: In Tech. , pp.107-124

Professor Michael Duffy

MJ Duffy, M Mullooly, J Crown, PM McGowan (2013) 'The ADAMs: new Therapeutic

Targets for Cancer' In: YH Bae, RJ Mrsny, K Park (eds). Cancer Targeted Drug

Delivery. New York: Springer.

Duffy MJ (2012) 'Use of Tumor markers in the Detection and Management of Patients

with Colorectal Cancer' In: C H Cho and J Yu (eds). From Inflammation to Cancer:

https://rms.ucd.ie/ufrs/[email protected]




http://dx.doi.org/10.5772/48681

http://dx.doi.org/10.5772/53870

http://dx.doi.org/10.5772/50272

http://dx.doi.org/10.5772/47182

Advances in Diagnosis and Therapy for Gastrointestinal and Hepatological Disease.

New Jersey, London, Singapore: World Scientific. , pp.315-330

Professor Suzi Jarvis

S. P. Jarvis, G. Kaggwa and K. Sheikh (2013) 'Liquid structure at the solid-liquid

interface' In: T. Ondarcuhu and J.-P. Aim� (eds). Nanoscale Liquid Interfaces: Wetting,

Patterning and Force Microscopy at the Nanoscale. Singapore: Pan Stanford

Publishing.

Jarvis, S.P. and Mostaert, A.S. (2012) 'The fine line between pathology and physiology'

In: Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in

Nature. Singapore: Pan Stanford Publishing. , pp.159-166

B. Rodriguez and S. P. Jarvis (2012) 'Atomic force microscopy: An enabling

nanotechnology for diabetes research' In: Lan-Anh Le, Ross J. Hunter and Victor R.

Preedy (eds). Nanotechnology and Nanomedicine in Diabetes. USA: Science Publishers.

Mostaert, A.S. and Jarvis, S.P. (2012) 'Functional amyloid in natural adhesives' In:

Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in Nature.

Singapore: Pan Stanford Publishing. , pp.131-146

Professor Gil Lee

Stoeckli ET, D Kilinc, B Kunz, S Kunz, GU Lee, E Martines, C Rader and D Sute

(2013) 'Analysis of cell-cell contact mediated by Ig superfamily cell adhesion molecules'

In: Juan S. Bonifacino (eds). Curr Protoc Cell Biol. NY: Wiley.

Gil U Lee, Krasimir Ivanov, Devrim Kilinc, Elena Martines, Agata Blasiak, Peng Li,

and Michael J. Higgins (2013) 'Characterization of inter- and intramolecular interactions

with the atomic force microscope' In: Corey Neu and Guy Genin (eds). CRC Handbook

of Imaging in Biological Mechanics. Oxford, UK: Taylor and Francis.

Professor David MacHugh

Hill EW, Katz LM, MacHugh DE; (2013) 'Genomics of Performance' In: Hill EW, Katz

LM, MacHugh DE; (eds). Equine Genomics. Hoboken, NJ: Wiley-Blackwell. , pp.265-

284

Dr Gethin McBean

McBean, G.J. (2013) 'The thiol redox system in glioma biology: clinical target and

significance in resistance to glioma therapy' In: Wiranowska, M. and Vrionis, F.D., Eds

(eds). Gliomas: symptoms, diagnosis and treatment options. New York: Nova Science

Publishers. , pp.321-340

McBean, G.J. (2012) 'Astrocytes and the regulation of cerebral cysteine/cystine redox

potential: implications for cysteine neurotoxicity' In: Chorkina, F.V. and Karatev, A.I.,

Eds (eds). Cysteine: biosynthesis, chemical structure and toxicity. New York: Nova

Science Publishers. , pp.135-153

Dr Anika Mostaert

Higgins, L. and Mostaert, A. S. (2013) 'Qualitative and Quantitative Study of Spiny

Starfish (Marthasterias glacialis) Footprints Using Atomic Force Microscopy' In: Santos

R., Aldred N., Gorb S. and Flammang P (eds). Biological and Biomimetic Adhesives.

Challenges and Opportunities. London, UK: RSC Publishing. , pp.26-37

Mostaert, A.S. and Jarvis, S.P. (2012) 'Functional amyloid in natural adhesives' In:






http://www.panstanford.com/books/9789814267403.html


Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in Nature.

Singapore: Pan Stanford Publishing. , pp.131-146

Jarvis, S.P. and Mostaert, A.S. (2012) 'The fine line between pathology and physiology'

In: Jarvis, S.P. and Mostaert, A.S (eds). The Functional Fold. Amyloid Structures in

Nature. Singapore: Pan Stanford Publishing. , pp.159-166

Professor Ron Pinhasi

Pinhasi R (2013) 'Holocene Migration: Europe' In: Pinhasi R (eds). The Encyclopedia of

Global Human Migration. New York: Wiley-Liss.

Pinhasi, R; Heyer, E (2013) 'Central Asia: Archaeology and genetics' In: Ness, I;

Bellwood, P (eds). The Encyclopedia of Global Human Migration. New York: Wiley-

Liss.

Professor William Powderly

WG Powderly (2012) 'Cryptococcosis' In: D. Warrell, T. Cox, J. Firth, E. Torok (eds).

Oxford Textbook of Infectious and Tropical Diseases. Oxford: Oxford University Press.

, pp.639-641

Professor Ciaran Regan

Regan CM (2013) 'The Addicted Self: A Neuroscientific Perspective' In: Regan CM

(eds). Intoxication and Society: Problematic Pleasures of Drugs and Alcohol. London:

Palgrave MacMillan.

Herring J, Regan CM, Weinberg D, Withington P (2013) 'Starting the conversation' In:

Herring J, Regan CM, Weinberg D, Withington P (eds). Intoxication and Society:

Problematic Pleasures of Drugs and Alcohol. London: Palgrave MacMillan.

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Books Edited


Al-Rubeai M. and Naciri M (Ed.). (2013) Stem Cells and Cell Therapy. Dordrecht: Springer.


S.P. Jarvis and A.S. Mostaert (Ed.). (2012) The Functional Fold. Amyloid structures in

nature. Singapore: Pan Stanford Publishing.


Herring J, Regan CM, Weinberg D, Withington P (Ed.). (2013) Intoxication and Society:

Problematic Pleasures of Drugs and Alcohol. London: Palgrave MacMillan.

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Peer Reviewed Journals


Edros R., McDonnell S., Al-Rubeai M. (2013) 'Using molecular markers to characterize

productivity in Chinese hamster ovary cell lines'. PLoS ONE, 8 (10).

Kennedy E., Al-Majmaie R., Al-Rubeai M., Zerulla D., Rice J. H. (2013) 'Nanoscale

infrared absorption imaging permits non-destructive intracellular photosensitizer

localization for subcellular uptake analysis'. Rsc Advances, 3 :13789-13795.











Hilal-Alnaqbi A., Hu A., Zhang Z., Al-Rubeai M. (2013) 'Growth, metabolic activity,

and productivity of immobilized and freely suspended CHO cells in perfusion culture'.

Biotechnology and Applied Biochemistry, 60 :243-247.

Kiani H., Sun D.-W., Zhang Z., Al-Rubeai M., Naciri M. (2013) 'Ultrasound-assisted

freezing of Lactobacillus plantarum subsp. plantarum: The freezing process and cell

viability'. Innovative Food Science and Emerging Technologies, 18 :138-144.

Professor Alan Baird

Brayden DJ, Baird AW (2013) 'Opportunities for drug-delivery research in

nutraceuticals and functional foods?'. Therapeutic Delivery, 4 (3):301-305.

Pluta K, McGettigan PA, Reid CJ, Browne JA, Irwin JA, Tharmalingam T, Corfield A,

Baird A, Loftus BJ, Evans AC, Carrington SD. (2012) 'Molecular aspects of mucin

biosynthesis and mucus formation in the bovine cervix during the periestrous period'.

Physiological genomics .

Medani M, Bzik VA, Rogers A, Collins D, Kennelly R, Winter DC, Brayden DJ, Baird

AW (2012) 'Zinc sulphate attenuates chloride secretion in Human colonic mucosae in

vitro'. European Journal of Pharmacology, 696 (1-3):166-171.

Mohan HM, Collins D, Maher S, Walsh EG, Winter DC, O'Brien PJ, Brayden DJ, Baird

AW (2012) 'The mycotoxin patulin increases colonic epithelial permeability in vitro'.

FOOD CHEM, 50 (11):4097-4102.

Mohan, H.M., Maher, S., Collins, D., Walsh, E.G., Winter, D.C., O'Brien, P.J., Brayden

D.J., & Baird, A.W. (2012) 'The mycotoxin, patulin, increases colonic epithelial

permeability. Food and Chemical Toxicology'. Food Chemical Toxicology, 50

(11):4097-4102.

Pluta K, McGettigan PA, Reid CJ, Browne JA, Irwin JA, Tharmalingam T, Corfield A,

Baird AW, Loftus BJ, Evans AC, Carrington SD (2012) 'Molecular aspects of mucin

biosynthesis and mucus formation in the bovine cervix during the periestrous period'.

Physiological genomics .

Dr John Andrew Baugh

Glezeva N, Collier P, Voon V, Ledwidge M, McDonald K, Watson C, Baugh J (2013)

'Attenuation of monocyte chemotaxis--a novel anti-inflammatory mechanism of action

for the cardio-protective hormone B-type natriuretic peptide'. The Journal of

Cardiovascular Translational Research, 6 (4):545-557.

Robinson CM, Watson CJ, Baugh JA (2012) 'Epigenetics within the matrix: A neo-

regulator of fibrotic disease'. Epigenetics : official journal of the DNA Methylation

Society, 7 (9):987-993.

Collier P, Watson CJ, Waterhouse DF, Dawkins IR, Patle AK, Horgan S, Conlon CM,

O'Hanlon R, Baugh JA, Ledwidge MT, McDonald K (2012) 'Progression of left atrial

volume index in a population at risk for heart failure: a substudy of the STOP-HF (St

Vincent's Screening TO Prevent Heart Failure) trial'. European Journal of Heart

Failure, 14 (9):957-964.

Dr Orina Belton

McCarthy, C,Duffy, MM,Mooney, D,James, WG,Griffin, MD,Fitzgerald, DJ,Belton, O

(2013) 'IL-10 mediates the immunoregulatory response in conjugated linoleic acid-

induced regression of atherosclerosis'. The FASEB journal : official publication of the

Federation of American Societies for Experimental Biology, 27 :499-510.




Reynolds, CM,Toomey, S,McBride, R,McMonagle, J,Morine, MJ,Belton, O,Moloney,

AP,Roche, HM (2013) 'Divergent effects of a CLA-enriched beef diet on metabolic

health in ApoE(-/-) and ob/ob mice'. J Nutr Biochem, 24 :401-411.

McCarthy C, Duffy MM, Mooney D, James WG, Griffin MD, Fitzgerald DJ, Belton O.

(2012) 'IL-10 mediates the immunoregulatory response in conjugated linoleic acid-

induced regression of atherosclerosis'. FASEB Journal, [Epub ahead of print] .

Dr Oliver Blacque

Olivier-Mason A, Wojtyniak M, Bowie RV, Nechipurenko IV, Blacque OE, Sengupta P

(2013) 'Transmembrane protein OSTA-1 shapes sensory cilia morphology via regulation

of intracellular membrane trafficking in C. elegans'. Development, 140 (7):1560-1572.

Professor Billy Bourke

Alvarez LA, Bourke B, Pircalabioru G, Georgiev AY, Knaus UG, Daff S,

Corcionivoschi (2013) 'Cj1411c Encodes for a Cytochrome P450 Involved in

Campylobacter jejuni 81-176 Pathogenicity'. PLoS ONE, 26 (8).

Julie Ann Naughton JA, Mari�o K, Dolan B, Reid C, Gough R, Gallagher ME,

Kilcoyne M, Gerlach JQ, Joshi L, Rudd P, Carrington S, �Clyne M, �Billy Bourke B

(�.Joint Snr Co-authors). (2013) 'Divergent mechanisms of interaction of Helicobacter

pylori and Campylobacter jejuni with mucus and mucins'. Infection and Immunity, 81

:2838-2850.

Crowley E, Bourke B, Hussey S (2013) 'How to use Helicobacter pylori testing in

paediatric practice'. Archives Of Disease In Childhood-Education And Practice Edition,

98 (1):18-25.

Professor David Brayden

Ryan, S. M., McMorrow, J., Umerska, A., Patel, H. B., Kornerup, K. N., Tajber, L.,

Murphy, E. P., Perretti, M., Corrigan, O. I., & & Brayden, D. J. (2013) 'An intra-

articular salmon calcitonin-based nanocomplex reduces experimental inflammatory

arthritis'. Journal of controlled release : official journal of the Controlled Release

Society, 167 :120-129.

Brayden DJ, Baird AW (2013) 'Opportunities for drug-delivery research in

nutraceuticals and functional foods?'. Therapeutic Delivery, 4 (3):301-305.

Petersen, S. B., Nielsen L.G., Rahbek, U.L. Guldbrandt, M. & Brayden, D. J. (2013)

'Colonic absorption of salmon calcitonin using tetradecyl maltoside (TDM) as a

permeation enhancer'. European Journal of Pharmaceutical Sciences, 48 :726-734.




(11):4097-4102.

Petersen, S. B, Nolan,G., Maher, S., Rahbek,U. L., Guldbrandt,M, Brayden, D. J. (2012)

'Evaluation of alkyl maltosides as intestinal permeation enhancers: Comparison between

rat intestinal mucosal sheets and Caco-2 monolayers'. European Journal of

Pharmaceutical Sciences .

Dr Lorraine Brennan

Morris C, Gibney M, Roche H, Ryan M, Grada O, De Vito G, Gibney E, Brennan L

(2013) 'The relationship between aerobic fitness level and metabolic profiles in healthy





http://www.ncbi.nlm.nih.gov/pubmed/23391443


adults'. Molecular Nutrition and Food Research .

Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L (2013)

'Identification of differential responses to an oral glucose tolerance test in healthy

adults'. PLoS ONE, 8 (8).

Matoba S, Bender K, Fahey AG, Mamo S, Brennan L, Lonergan P, Fair T (2013)

'Predictive value of bovine follicular components as markers of oocyte developmental

potential'. Reproduction, fertility, and development .

Neal CM, Hunter AM, Brennan L, O'Sullivan A, Hamilton DL, De Vito G, Galloway

SD (2013) 'Six weeks of a polarized training-intensity distribution leads to greater

physiological and performance adaptations than a threshold model in trained cyclists'.

Journal of Applied Physiology, 114 (4):461-471.

Ryan, MF,Grada, CO,Morris, C,Segurado, R,Walsh, MC,Gibney, ER,Brennan,

L,Roche, HM,Gibney, MJ (2013) 'Within-person variation in the postprandial lipemic

response of healthy adults'. American Journal of Clinical Nutrition, 97 :261-267.

Forte, R,Boreham, CAG,Leite, JC,De Vito, G,Brennan, L,Gibney, ER,Pesce, C (2013)

'Enhancing cognitive functioning in the elderly: multicomponent vs resistance training'.

Clinical Interventions in Aging, 8 :19-27.

Neal, CM,Hunter, AM,Brennan, L,O'Sullivan, A,Hamilton, DL,DeVito, G,Galloway,

SDR (2013) 'Six weeks of a polarized training-intensity distribution leads to greater

physiological and performance adaptations than a threshold model in trained cyclists'.

Journal of applied physiology (Bethesda, Md. : 1985), 114 :461-471.

Brennan, L (2013) 'Metabolomics in nutrition research: current status and perspectives'.

Biochemical Society Transactions, 41 :670-673.

Monahan FJ, Moloney AP, Osorio MT, R�hrle FT, Schmidt O and Brennan L (2012)

'Authentication of grass-fed beef using bovine muscle, hair or urine'. Trends in Food

Science & Technology, 28 (2):69-76.

Professor Geraldine Butler

Mohan Pammi, Linda Holland, Geraldine Butler, Attila Gacser, Joseph M. Bliss (2013)

'Candida parapsilosis is a Significant Neonatal Pathogen: A Systematic Review and

Meta-analysis'. Pediatric Infectious Disease Journal .

Anastasia Gioti, Bj�rn Nystedt, Wenjun Li, Jun Xud, Anna Andersson, Anna F.

Averette, Karin M�nch, Xuying Wang, Catharine Kappauf, Joanne M. Kingsbury, Bart

Kraak, Louise A. Walker, Henrik J. Johansson, Tina Holm, Janne Lehti�, Jason E.

Stajich, Piotr Mieczkowski, Regine Kahmann, John C. Kennell, Maria E. Cardenas,

Joakim Lundeberg, Charles W. Saunders, Teun Boekhout, Thomas L. Dawson, Carol A.

Munro, Piet W.J. de Groot, Geraldine Butler, Joseph Heitman, and Annika Scheynius*

(2013) 'Genomic Insights into the Atopic Eczema-Associated Skin Commensal Yeast

Malassezia sympodialis'. mBIO .

Connolly LA, Riccombeni A, Gr�zer Z, Holland LM, Lynch DB, Andes DR, G�cser

A, Butler G. (2013) 'The APSES transcription factor Efg1 is a global regulator that

controls morphogenesis and biofilm formation in Candida parapsilosis'. Molecular

Microbiology .

Maguire SL, Oh�igeartaigh SS, Byrne KP, Schr�der MS, O'Gaora P, Wolfe KH,

Butler G (2013) 'Comparative Genome Analysis and Gene Finding in Candida Species

Using CGOB'. Molecular Biology and Evolution, 30 (6):1281-1291.

Butler, G. (2013) 'Hypoxia and Gene Expression in Eukaryotic Microbes'. Annual


http://dx.doi.org/10.1016/j.tifs.2012.05.005

Review of Microbiology .

Gioti, A,Nystedt, B,Li, WJ,Xu, J,Andersson, A,Averette, AF,Munch, K,Wang,

XY,Kappauf, C,Kingsbury, JM,Kraak, B,Walker, LA,Johansson, HJ,Holm, T,Lehtio,

J,Stajich, JE,Mieczkowski, P,Kahmann, R,Kennell, JC,Cardenas, ME,Lundeberg,

J,Saunders, CW,Boekhout, T,Dawson, TL,Munro, CA,de Groot, PWJ,Butler,

G,Heitman, J,Scheynius, A (2013) 'Genomic Insights into the Atopic Eczema-

Associated Skin Commensal Yeast Malassezia sympodialis'. mBio, 4 .

Alessandro Riccombeni and Geraldine Butler (2012) 'Role of Genomics and RNA-seq in

Studies of Fungal Virulence'. Current Fungal Infection Reports .

Dr Gerard Cagney

Casey WT, Nikodinovic-Runic J, Fonseca Garcia P, Guzik MW, McGrath JW, Quinn

JP, Cagney G, Prieto MA, O'Connor KE (2013) 'The effect of polyphosphate kinase

gene deletion on polyhydroxyalkanoate accumulation and carbon metabolism in

Pseudomonas putida KT2440'. Environmental Microbiology, 5 :740-746.

Di Cara F, Duca E, Dunbar DR, Cagney G, Heck MM. (2013) 'Invadolysin, a conserved

lipid-droplet-associated metalloproteinase, is required for mitochondrial function in

Drosophila'. Journal of Cell Science, 126 :4769-4781.

Ryan CJ, Krogan NJ., Cunningham P, Cagney, G. (2013) 'All or nothing: protein

complexes flip essentiality between distantly related eukaryotes'. Genome Biology and

Evolution .

Roguev A, Talbot D, Negri GL, Shales M, Cagney G, Bandyopadhyay S, Panning B,

Krogan NJ (2013) 'Quantitative genetic-interaction mapping in mammalian cells'.

Nature Methods, 10 (5):432-437.

Scanlon KA, Cagney C, Walsh D, McNulty D, Carroll A, McNamara EB, McDowell

DA, Duffy G (2013) 'Occurrence and characteristics of fastidious Campylobacteraceae

species in porcine samples'. International Journal of Food Microbiology, 163 (1):6-13.

Brien GL, Gambero G, O'Connell DJ, Jerman E, Turner SA, Egan CM, Dunne EJ,

Jurgens MC, Wynne K, Piao L, Lohan AJ, Ferguson N, Shi X, Sinha KM, Loftus BJ,

Cagney G, Bracken AP. (2012) 'Polycomb PHF19 binds H3K36me3 and recruits PRC2

and demethylase NO66 to embryonic stem cell genes during differentiation'. Nature

structural & molecular biology, 19 (12):1273-1281.

Professor Sean Callanan

Cahalan SD Hick G Rossiter A Callanan JJ (2013) 'Fatal fibrinosuppurative meningitis

in a dog associated with Prevotella oralis infection'. Journal of Small Animal Practice,

54 (3) :153-155.

Quinliven M Cook F, Kenna R, Callanan JJ Cullinane A (2013) 'Genetic

characterization by composite sequence analysis of a new pathogenic field strain of

equine infectious anemia virus from the 2006 outbreak in Ireland'. Journal of General

Virology, 94 :612-622.

Chapwanya A Meade KG Doherty ML Callanan JJ O'Farrelly C (2013) 'Endometrial

epithelial cells are potent producers of tracheal antimicrobial peptide and serum amyloid

A3 gene expression in response to E Coli stimulation'. Veterinary Immunology and

Immunopathology, 151 :157-162.

Yang S, Wang B, Tang LS, Siednienko J, Callanan JJ, Moynagh PN (2013) 'Pellino3

targets RIP1 and regulates the pro-apoptotic effects of TNF-α'. Nature communications,

4 .



http://gbe.oxfordjournals.org/content/early/2013/03/22/gbe.evt074.abstract?keytype=ref&ijkey=LKPptOeqlWyldw6

Terzo E, McConnell JF, Shiel RE, McAllister H, Behr S, Priestnall SL, Smith KC,

Nolan CM, Callanan JJ (2012) 'Unique topographic distribution of greyhound

nonsuppurative meningoencephalitis'. Veterinary radiology & ultrasound : the official

journal of the American College of Veterinary Radiology and the International

Veterinary Radiology Association .

Siednienko J, Jackson R, Mellett M, Delagic N, Yang S, Wang B, Tang LS, Callanan JJ,

Mahon BP, Moynagh PN. (2012) 'Pellino 3 targets the IRF7 pathway and facilitates

autofegulation of TLR3 and viral-induced expression of type 1 interferons'. NATURE

IMMUNOLOGY .

Foley C, Chapwanya A, Creevey C, Narciandi F, Morris D, Kenny E, Cormican P,

Callanan JJ, O'Farrelly C, Meade KG. (2012) 'Global endometrial transcriptomic

profiling: transient immune activation precedes tissue proliferation and repair in healthy

beef cows'. BMC Genomics .

Dr Marguerite Clyne

Devon W. Kavanaugh, John O'Callaghan, Ludovica F. Butt�, Helen Slattery, Jonathan

Lane, Marguerite Clyne, Marian Kane, Lokesh Joshi, Rita M. Hickey (2013) 'Exposure

of Bifidobacterium longum subsp. infantis to Milk Oligosaccharides Increases Adhesion

to Epithelial Cells and Induces a Substantial Transcriptional Response'. PLoS ONE .

Julie Ann Naughton JA, Mari�o K, Dolan B, Reid C, Gough R, Gallagher ME,

Kilcoyne M, Gerlach JQ, Joshi L, Rudd P, Carrington S, �Clyne M, �Billy Bourke B

(�.Joint Snr Co-authors). (2013) 'Divergent mechanisms of interaction of Helicobacter

pylori and Campylobacter jejuni with mucus and mucins'. Infection and Immunity, 81

:2838-2850.

Dolan B, Naughton J, Tegtmeyer N, May FE, Clyne M. (2012) 'The Interaction of

Helicobacter pylori with the Adherent Mucus Gel Layer Secreted by Polarized HT29-

MTX-E12 Cells'. PLoS ONE, 7 (10).

Yan D, Naughton J, Clyne M, Murphy PV. (2012) 'Synthesis of bivalent glycoclusters

containing GlcNAc as hexasaccharide mimetics. Bactericidal activity against

Helicobacter pylori'. Carbohydrate research, 360 :1-7.

Dr John Crean

Faherty, N., O'Donovan, H., Kavanagh, D., madden, S., McKay, GJ, Maxwell, AP.,

Martin, F., Godson, C and Crean, J. (2013) 'TGFβ and CCN2/CTGF mediate actin

related gene 3 expression by differential E2F1/CREB activation'. BMC Genomics .

David H Kavanagh, David A Savage, Christopher C Patterson, Amy Jayne McKnight

John Crean, Alexander P Maxwell, Gareth J McKay. (2013) 'Haplotype association

analysis of genes within the WNT signalling pathways indiabetic nephropathy BMC

Nephrology 2013, 14:126'. Nephrology .

Hookham MB, O'Donovan HC, Church RH, Mercier-Zuber A, Luzi L, Curran SP,

Carew RM, Droguett A, Mezzano S, Schubert M, White MF, Crean JK, Brazil DP

(2013) 'Insulin receptor substrate-2 is expressed in kidney epithelium and up-regulated

in diabetic nephropathy'. FEBS Journal .

Faherty N, Curran SP, O'Donovan H, Martin F, Godson C, Brazil DP, and Crean J

(2012) 'CCN2/CTGF increases expression of miR-302 microRNAs, which target the

TGFβ type II receptor with implications for nephropathic cell phenotypes'. Journal of

Cell Science .



Professor Mark Crowe

Beltman ME, Forde N, Lonergan P, Crowe MA (2013) 'Altered endometrial immune

gene expression in beef heifers with retarded embryos'. Reproduction Fertility and

Development, 25 (6):966-970.

Scully S, Maillo V, Duffy P, Kelly A, Crowe M, Rizos D, Lonergan P (2013) 'The

Effect of Lactation on Post-Partum Uterine Involution in Holstein Dairy Cows'.

Reproduction in domestic animals = Zuchthygiene, 48 :888-892.

Herlihy, MM,Crowe, MA,Berry, DP,Diskin, MG,Butler, ST (2013) 'Factors associated

with fertility outcomes in cows treated with protocols to synchronize estrus and

ovulation in seasonal-calving, pasture-based dairy production systems'. Journal of Dairy

Science, 96 (3):1485-1498.

Mullen MP, Bazer FW, Wu G, Parr MH, Evans AC, Crowe MA, Diskin MG (2013)

'Effects of systemic progesterone during the early luteal phase on the availabilities of

amino acids and glucose in the bovine uterine lumen'. Reproduction, fertility, and

development .

Herlihy MM, Giordano JO, Souza AH, Ayres H, Ferreira RM, Keskin A. Nascimento

AB, Guenther JN, Gaska JM, Kacuba SJ, Crowe MA, Butler ST, Wiltbank MC (2012)

'Presynchronization with Double-Ovsynch improves fertility at first postpartum artificial

insemination in lactating dairy cows'. Journal of Dairy Science, 95 (12):7003-7014.

Forde, N,Mehta, JP,Minten, M,Crowe, MA,Roche, JF,Spencer, TE,Lonergan, P (2012)

'Effects of Low Progesterone on the Endometrial Transcriptome in Cattle'. Biology of

Reproduction, 87 (5):124, 1-11.

Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia

N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC. (2012)

'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon

and independent of interferon tau'. Physiolgical Genomics, 44 (16):799-810.

Gath, VP, Crowe, MA, O'Callaghan, D, Boland, MP, Duffy, P, Lonergan, P, Mulligan,

FJ (2012) 'Effects of diet type on establishment of pregnancy and embryo development

in beef heifers'. Animal Reproduction Science, 133 (3):139-145.

Professor Michael Duffy

Duffy Michael (2013) 'Investigation of Molecular Alterations of AKT-3 in Triple

Negative Breast Cancer'. Histopathology .

Duffy Michael (2013) 'Comparative antiproliferative effects of iniparib and olaparib on

a panel of triple-negative and non-triple-negative breast cancer cell lines'. Cancer

Biology & Therapy .

Duffy MJ, Lamerz R, Haglund C, Nicolini A, Kalousová M, Holubec L, Sturgeon C

(2013) 'Tumor markers in colorectal cancer, gastric cancer and gastrointestinal stromal

cancers: European group on tumor markers 2014 guidelines update'. INT J CANCER .

Duffy MJ (2013) 'The war on cancer: are we winning?'. Tumour biology : the journal of

the International Society for Oncodevelopmental Biology and Medicine, 34 (3):1275-

1284.

O Leary PC, Penny SA, Dolan RT, Kelly CM, Madden SF, Rexhepaj E, Brennan DJ,

McCann AH, Pontén F, Uhlén M, Zagozdzon R, Duffy MJ, Kell MR, Jirström K,

Gallagher WM (2013) 'Systematic antibody generation and validation via tissue

microarray technology leading to identification of a novel protein prognostic panel in

breast cancer'. BMC Cancer, 13 .



Soletormos, G,Duffy, MJ,Hayes, DF,Sturgeon, CM,Barak, V,Bossuyt, PM,Diamandis,

EP,Gion, M,Hyltoft-Petersen, P,Lamerz, RM,Nielsen, DL,Sibley, P,Tholander,

B,Tuxen, MK,Bonfrer, JMG (2013) 'Design of Tumor Biomarker-Monitoring Trials: A

Proposal by the European Group on Tumor Markers'. Clinical Chemistry, 59 :52-59.

Duffy MJ, McGowan PM, Crown J (2012) 'Targeted therapy for triple-negative breast

cancer: Where are we?'. INT J CANCER, 131 (11):2471-2477.

Browne BC, Eustace AJ, Kennedy S, O'Brien NA, Pedersen K, McDermott MS, Larkin

A, Ballot J, Mahgoub T, Sclafani F, Madden S, Kennedy J, Duffy MJ, Crown J,

O'Donovan N (2012) 'Evaluation of IGF1R and phosphorylated IGF1R as targets in

HER2-positive breast cancer cell lines and tumours'. Breast Cancer Research and

Treatment .

Sölétormos G, Duffy MJ, Hayes DF, Sturgeon CM, Barak V, Bossuyt PM, Diamandis

EP, Gion M, Hyltoft-Petersen P, Lamerz RM, Nielsen DL, Sibley P, Tholander B,

Tuxen MK, Bonfrer JM (2012) 'Design of Tumor Biomarker-Monitoring Trials: A

Proposal by the European Group on Tumor Markers'. Clinical Chemistry .

McGowan PM, Mullooly M, Caiazza F, Sukor S, Madden SF, Maguire AA, Pierce A,

McDermott EW, Crown J, O'Donovan N, Duffy MJ (2012) 'ADAM-17: a novel

therapeutic target for triple negative breast cancer'. Annals of Oncology .

Professor Paul Engel

Munawar, N,Engel, PC (2013) 'Prospects for robust biocatalysis: engineering of novel

specificity in a halophilic amino acid dehydrogenase'. Extremophiles, 17 :43-51.

Xuejing Yu, Julia Bresser, Iris Schall, Ivana Djurdjevic, Wolfgang Buckel, Xingguo

Wang and Paul C. Engel (2012) 'Development of a satisfactory and general continuous

assay for aminotransferases by coupling with (R)-2-hydroxyglutarate dehydrogenase'.

Analytical Biochemistry, 431 (2):127-131.

Sharkey MA, Gori A, Capone M and Engel PC (2012) 'Reversal of the extreme

coenzyme selectivity of Clostridium symbiosum glutamate dehydrogenase'. FEBS

Journal, 279 (17):3003-3009.

Professor Alexander Evans

F Mossa, F Carter, SW Walsh, DA Kenny, GW Smith, P Lonergan, JLH Ireland, JJ

Ireland, ACO Evans (2013) 'Maternal undernutrition of heifers diminishes the size of

ovarian reserve and increases arterial blood pressure in the offspring'. Biology of

Reproduction, 88 (4):1-9.

MP Mullen, FW Bazer, G Wu, MH Parr, ACO Evans, MA Crowe, MG Diskin (2013)

'Effects of systemic progesterone during the early luteal phase on availabilities of amino

acids and glucose in the bovine uterine lumen'. Reproduction, fertility, and development

.

L O'Hara, N Forde, F Carter, D Rizos,V Maillo, AD Ealy, AK Kelly, P Rodriguez, N

Isaka, ACO Evans, P Lonergan (2013) 'Paradoxical effect of supplementary

progesterone between day 13 and 7 on corpus luteum function and conceptus

development in cattle'. Reproduction, fertility, and development .

SW Walsh, T Fair, JA Browne, ACO Evans, PA Gettigan (2012) 'Physiological status

alters immunological regulation of bovine follicle differentiation in dairy cattle'.

JOURNAL OF REPRODUCTIVE IMMUNOLOGY, 96 .

K Pluta, PA Mc Gettigan, CJ Reid, JA Browne, JA Irwin, T Tharmalingam, T Corfield,

A Baird, BJ Loftus, AC Evans, SD Carrington. (2012) 'Molecular aspects of mucin



http://www.sciencedirect.com/science/article/pii/S0003269712004563

biosynthesis and mucin formation in the bovine cervix during periestrous period'.

Physiological genomics, 44 (42):1165-1178.

Sikora, K. M., Magee, D. A., Berkowicz, E. W., Lonergan, P., Evans, A. C. O., Carter,

F., Comte, A., Waters, S. M., MacHugh, D. E., Spillane, C. (2012) 'PHLDA2 is an

imprinted gene in cattle'. Animal Genetics, 43 (5):587-590.

Hutchinson IA, Dewhurst RJ, Evans AC, Lonergan P, Butler ST (2012) 'Effect of grass

dry matter intake and fat supplementation on progesterone metabolism in lactating dairy

cows'. Theriogenology, 78 (4):878-886.

Dr Neil Ferguson

Alexander, C.G., Jurgens, M.C., Shepherd, D.A., Freund, S.M.V., Ashcroft, A.E &

Ferguson, N. (2013) 'Thermodynamic origins of protein folding, allostery and capsid

formation in the human hepatitis B virus core protein'. PNAS, 110 .

J�rgens, M.C., V�r�s, J., Rautureau, G.J.P., Shepherd, D.AS., Pye, V.E., Muldoon,

J., Johnson, C.M., Ashcroft, A.E., Freund, S.M.V. & Ferguson, N. (2013) 'The hepatitis

B virus preS1 domain hijacks host trafficking proteins by motif mimicry'. Nature

Chemical Biology, 9 (9).



Cagney G, Bracken AP (2012) 'Polycomb PHF19 binds H3K36me3 and recruits PRC2


structural & molecular biology .

Professor Oliver Fitzgerald

Mongey AB, Doran JP, Kleinerova J, Fitzgerald O, McDonnell TJ. (2013) 'Late onset

tuberculosis infection in patients receiving anti-TNFα therapy'. QJM : monthly journal

of the Association of Physicians .

Boehncke WH, Kirby B, Fitzgerald O, van de Kerkhof PC (2013) 'New developments in

our understanding of psoriatic arthritis and their impact on the diagnosis and clinical

management of the disease'. J Am Acad Dermatol .

FitzGerald O, Mease PJ (2013) 'Biomarkers: project update from the GRAPPA 2012

annual meeting'. Journal of Rheumatology .

Helliwell PS, Mease PJ, FitzGerald O, Taylor WJ, van der Heijde D. (2013) 'Peripheral

spondyloarthritis and psoriatic arthritis; overlaps and distinctions: a report from the

GRAPPA 2012 annual meeting'. Journal of Rheumatology .

Cobb JE, Plant D, Flynn E, Tadjeddine M, Dieud� P, Corn�lis F, �rlestig L,

Dahlqvist SR, Goulielmos G, Boumpas DT, Sidiropoulos P, Krintel SB, �rnbjerg LM,

Hetland ML, Klareskog L, Haeupl T, Filer A, Buckley CD, Raza K, Witte T, Schmidt

RE, FitzGerald O, Veale D, Eyre S, Worthington J. (2013) 'Identification of the

tyrosine-protein phosphatase non-receptor type 2 as a rheumatoid arthritis susceptibility

locus in europeans'. PLoS ONE .

Smolen JS, Braun J, Dougados M, Emery P, Fitzgerald O, Helliwell P, Kavanaugh A,

Kvien TK, Landew� R, Luger T, Mease P, Olivieri I, Reveille J, Ritchlin C, Rudwaleit

M, Schoels M, Sieper J, Wit MD, Baraliakos X, Betteridge N, Burgos-Vargas R,

Collantes-Estevez E, Deodhar A, Elewaut D, Gossec L, Jongkees M, Maccarone M,

Redlich K, van den Bosch F, Wei JC, Winthrop K, van der Heijde D. (2013) 'Treating

spondyloarthritis, including ankylosing spondylitis and psoriatic arthritis, to target:

recommendations of an international task force'. Annals of Rheumatic Diseases .



Schoels MM, Braun J, Dougados M, Emery P, Fitzgerald O, Kavanaugh A, Kvien TK,

Landew� R, Luger T, Mease P, Olivieri I, Reveille J, Ritchlin C, Rudwaleit M, Sieper

J, Smolen JS, Wit MD, van der Heijde D (2013) 'Treating axial and peripheral

spondyloarthritis, including psoriatic arthritis, to target: results of a systematic literature

search to support an international treat-to-target recommendation in spondyloarthritis'.

Annals of Rheumatic Diseases .

Coates LC, FitzGerald O, Gladman DD, McHugh N, Mease P, Strand V, Helliwell PS.

(2013) 'Reduced joint counts misclassify patients with oligoarticular psoriatic arthritis

and miss significant numbers of patients with active disease'. Arthritis Rheumatology .

Collins, E.S., Galligan, M.C., Saldova, R., Adamczyk, B., Abrahams, J.L., Campbell,

M.P., Ng, C.T., Veale, D.J., Murphy, T.B., Rudd, P.M., FitzGerald, O. (2013)

'Glycosylation Status of Serum in Inflammatory Arthritis in Response to Anti-TNF

Treatment'. Rheumatology, 52 (9):1572-1582.

Szentpetery A, McKenna MJ, Murray BF, Ng CT, Brady JJ, Morrin M, Radovits B,

Veale DJ, Fitzgerald O. (2013) 'Periarticular bone gain at proximal interphalangeal

joints and changes in bone turnover markers in response to tumor necrosis factor

inhibitors in rheumatoid and psoriatic arthritis'. Journal of Rheumatology .

Putrik P, Ramiro S, Kvien TK, Sokka T, Pavlova M, Uhlig T, Boonen A (2013)

'Working Group 'Equity in access to treatment of rheumatoid arthritis in Europe'.

Inequities in access to biologic and synthetic DMARDs across 46 European countries'.

Annals of Rheumatic Diseases .

Apel, M,Uebe, S,Bowes, J,Giardina, E,Korendowych, E,Juneblad, K,Pasutto, F,Ekici,

AB,McManus, R,Ho, P,Bruce, IN,Ryan, AW,Behrens, F,Bohm, B,Traupe, H,Lohmann,

J,Gieger, C,Wichmann, HE,Padyukov, L,FitzGerald, O,Alenius, GM,McHugh,

NJ,Novelli, G,Burkhardt, H,Barton, A,Reis, A,Huffmeier, U (2013) 'Variants in RUNX3

Contribute to Susceptibility to Psoriatic Arthritis, Exhibiting Further Common Ground

With Ankylosing Spondylitis'. Arthritis and Rheumatism, 65 :1224-1231.

French HP, Cusack T, Brennan A, White B, Gilsenan C, Fitzpatrick M, O'Connell P,

Kane D, Fitzgerald O, McCarthy GM (2013) 'Exercise and Manual therapy Arthritis

Research trial (EMPART) for osteoarthritis of the hip: A Multicentre Randomised

Controlled trial'. Archives of Physical Medicine and Rehabilitation .

Tsoi LC, Spain SL, Knight J, Ellinghaus E, Stuart PE, Capon F, Ding J, Li Y, Tejasvi T,

Gudjonsson JE, Kang HM, Allen MH, McManus R, Novelli G, Samuelsson L,

Schalkwijk J, St�hle M, Burden AD, Smith CH, Cork MJ, Estivill X, Bowcock AM,

Krueger GG, Weger W, Worthington J, Tazi-Ahnini R, Nestle FO, Hayday A,

Hoffmann P, Winkelmann J, Wijmenga C, Langford C, Edkins S, Andrews R,

Blackburn H, Strange A, Band G, Pearson RD, Vukcevic D, Spencer CC, Deloukas P,

Mrowietz U, Schreiber S, Weidinger S, Koks S, Kingo K, Esko T, Metspalu A, Lim

HW, Voorhees JJ, Weichenthal M, Wichmann HE, Chandran V, Rosen CF, Rahman P,

Gladman DD, Griffiths CE, Reis A, Kere J (2012) 'Collaborative Association Study of

Psoriasis (CASP); Genetic Analysis of Psoriasis Consortium; Psoriasis Association

Genetics Extension; Wellcome Trust Case Control Consortium 2, Nair RP, Franke A,

Barker JN, Abecasis GR, Elder JT, Trembath RC. Identification of 15 new psoriasis

susceptibility loci highlights the role of innate immunity'. Nature Genetics .

Helliwell PS, Fitzgerald O, Mease PJ, Gladman DD. (2012) 'GRAPPA Responder Index

Project (GRACE): a report from the GRAPPA 2011 annual meeting'. Journal of

Rheumatology .

FitzGerald O. (2012) 'Diagnosis: Screening for arthritis in patients with psoriasis'.

Rheumatology .

Doyle MS, Collins ES, Fitzgerald OM, Pennington SR. (2012) 'New insight into the

functions of the interleukin-17 receptor adaptor protein Act1 in psoriatic arthritis'.

Arthritis Research & Therapy .

Professor William Gallagher

Madden S. F., Clarke C., Aherne S. T., Gaule P., O'Donovan N., Crown J., Clynes M.,

Gallagher W.M. (2013) 'BreastMark: an integrated approach to mining publicly

available transcriptomic datasets relating to breast cancer outcome'. Breast Cancer

Research, 15 (4).

Clarke C, Madden SF, Doolan P, Aherne ST, Joyce H, O' Driscoll L, Gallagher WM,

Hennessy BT, Moriarty M, Crown J, Kennedy S, Clynes M (2013) 'Correlating

transcriptional networks to breast cancer survival: A large-scale coexpression analysis'.

Carcinogenesis .

Prencipe M, Madden SF, O'Neill A, O'Hurley G, Culhane A, O'Connor D, Klocker H,

Kay EW, Gallagher WM, Watson WR. (2013) 'Identification of transcription factors

associated with castration-resistance: is the serum responsive factor a potential

therapeutic target?'. Prostate, 73 (7):743-753.

Rexhepaj E, Agnarsd�ttir M, Bergman J, Edqvist PH, Bergqvist M, Uhl�n M,

Gallagher WM, Lundberg E, Ponten F. (2013) 'A texture based pattern recognition

approach to distinguish melanoma from non-melanoma cells in histopathological tissue

microarray sections'. PLoS ONE, 8 (5).

O'Connor S, Szwej E, Nikodinovic-Runic J, O'Connor A, Byrne AT, Devocelle M,

O'Donovan N, Gallagher WM, Babu R, Kenny ST, Zinn M, Zulian QR, O'Connor KE

(2013) 'The anti-cancer activity of a cationic anti-microbial peptide derived from

monomers of polyhydroxyalkanoate'. Biomaterials, 34 (11):2710-2718.

O Leary PC, Penny SA, Dolan RT, Kelly CM, Madden SF, Rexhepaj E, Brennan DJ,

McCann AH, Pont�n F, Uhl�n M, Zagozdzon R, Duffy MJ, Kell MR, Jirstr�m K,

Gallagher WM (2013) 'Systematic antibody generation and validation via tissue

microarray technology leading to identification of a novel protein prognostic panel in

breast cancer'. BMC Cancer, 13 (175).

Mitchem JB, Brennan DJ, Knolhoff BL, Belt BA, Zhu Y, Sanford DE, Belaygorod L,

Carpenter D, Collins L, Piwnica-Worms D, Hewitt S, Udupi GM, Gallagher WM,

Wegner C, West BL, Wang-Gillam A, Goedegebuure P, Linehan DC, DeNardo DG.

(2013) 'Targeting tumor-infiltrating macrophages decreases tumor-initiating cells,

relieves immunosuppression, and improves chemotherapeutic responses'. Cancer

Research, 73 (3):1128-1141.

Mulrane L, Madden SF, Brennan DJ, Gremel G, McGee SF, McNally S, Martin F,

Crown JP, Jirstr�m K, Higgins DG, Gallagher WM, O'Connor DP (2012) 'miR-187 Is

an Independent Prognostic Factor in Breast Cancer and Confers Increased Invasive

Potential In Vitro'. Clinical Cancer Research .

Professor Declan Gerard Gilheany

Peter A. Byrne, Declan G. Gilheany (2013) 'The modern interpretation of the Wittig

reaction mechanism'. Chemical Society Reviews, 42 .

Arne Ficks, Rachel M. Hiney, Ross W. Harrington, Declan G. Gilheany, Lee J. Higham,

(2012) 'MOP-phosphonites: A novel ligand class for asymmetric catalysis'. Dalton

Transactions, 41 .



Peter A. Byrne, Lee J. Higham, Padraic McGovern, Declan G. Gilheany (2012)

'Anomalous Z-isomer content in Wittig reaction products from keto-stabilised ylides

with ortho-heteroatom substituted benzaldehydes'. Tetrahedron Letters, 53 (49):6701-

6704.

Kirill Nikitin, Helge Mueller-Bunz, Declan G. Gilheany (2012) 'Direct evidence of a

multicentre halogen bond: unexpected contraction of the P-XXX-P fragment in

triphenylphosphine dihalides'. Chemical Communications, 49 (14):1434-1436.

Professor Catherine Godson




Corcoran JB, McCarthy S, Griffin B, Gaffney A, Bhreathnach U, Börgeson E, Hickey

FB, Docherty NG, Higgins DF, Furlong F, Martin F, Godson C, Murphy M (2013)

'IHG-1 must be localised to mitochondria to decrease Smad7 expression and amplify

TGF-β1-induced fibrotic responses'. Biochimica et biophysica acta, 1833 (8):1969-1978.

Brennan EP, Nolan KA, Börgeson E, Gough OS, McEvoy CM, Docherty NG, Higgins

DF, Murphy M, Sadlier DM, Ali-Shah ST, Guiry PJ, Savage DA, Maxwell AP, Martin

F, Godson C (2013) 'Lipoxins attenuate renal fibrosis by inducing let-7c and suppressing

TGFβR1'. Journal of the American Society of Nephrology, 24 (4):627-637.

Brennan, EP,Nolan, KA,Borgeson, E,Gough, OS,McEvoy, CM,Docherty, NG,Higgins,

DF,Murphy, M,Sadlier, DM,Ali-Shah, ST,Guiry, PJ,Savage, DA,Maxwell, AP,Martin,

F,Godson, C (2013) 'Lipoxins Attenuate Renal Fibrosis by Inducing let-7c and

Suppressing TGF beta R1'. J AM SOC NEPHROL, 24 :627-637.

Murphy M, Hickey F, Godson C (2013) 'IHG-1 amplifies TGF-β1 signalling and

mitochondrial biogenesis and is increased in diabetic kidney disease'. Current Opinion

in Nephrology and Hypertension, 22 (1):77-84.

Borgeson, E., McGillicuddy, F. C., Harford, K. A., Corrigan, N., Higgins, D. F.,

Maderna, P., Roche, H. M., Godson, C. (2012) 'Lipoxin A4 attenuates adipose

inflammation'. FASEB J, 26 (10):4287-94.

Börgeson E, McGillicuddy FC, Harford KA, Corrigan N, Higgins DF, Maderna P,

Roche HM, Godson C (2012) 'Lipoxin A4 attenuates adipose inflammation'. FASEB

Journal, 26 (10):4287-4294.

Faherty N, Curran SP, O'Donovan H, Martin F, Godson C, Brazil DP, and Crean J

(2012) 'CCN2/CTGF increases expression of miR-302 microRNAs, which target the

TGFβ type II receptor with implications for nephropathic cell phenotypes'. Journal of

Cell Science .

Professor Stephen Gordon

Allen AR, Dale J, McCormick C, Mallon TR, Costello E, Gordon SV, Hewinson RG,

Skuce RA, Smith NH (2013) 'The phylogeny and population structure of

Mycobacterium bovis in the British Isles'. Infection Genetics And Evolution, 20C :8-15.

Firdessa R, Berg S, Hailu E, Schelling E, Gumi B, Erenso G, Gadisa E, Kiros T,

Habtamu M, Hussein J, Zinsstag J, Robertson BD, Ameni G, Lohan AJ, Loftus B,

Comas I, Gagneux S, Tschopp R, Yamuah L, Hewinson G, Gordon SV, Young DB,

Aseffa A (2013) 'Mycobacterial lineages causing pulmonary and extrapulmonary

tuberculosis, Ethiopia'. Emerging Infectious Diseases, 19 (3):460-463.

Gouzy, A,Nigou, J,Gilleron, M,Neyrolles, O,Tailleux, L,Gordon, SV (2013)




'Tuberculosis 2012: biology, pathogenesis and intervention strategies; an update from

the city of light'. Research in Microbiology, 164 :270-280.

Nalpas, NC,Park, SDE,Magee, DA,Taraktsoglou, M,Browne, JA,Conlon, KM,Rue-

Albrecht, K,Killick, KE,Hokamp, K,Lohan, AJ,Loftus, BJ,Gormley, E,Gordon,

SV,MacHugh, DE (2013) 'Whole-transcriptome, high-throughput RNA sequence

analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro'.

BMC Genomics, 14 .

Sharkey, MA; O'Gara, JP; Gordon, SV; Hackenberg, F; Healy, C; Paradisi, F; Patil, S;

Schaible, B; Tacke, M (2012) 'Investigations into the Antibacterial Activity of the

Silver-Based Antibiotic Drug Candidate SBC3'. Antibiotics, 1 :25-28.

Professor Andrew Green

Dobson MG, Darlow JM, Hunziker M, Green AJ, Barton DE, Puri P. (2013)

'Heterozygous non-synonymous ROBO2 variants are unlikely to be sufficient to cause

familial vesicoureteric reflux'. Kidney International .

McGorrian C, Constant O, Harper N, O'Donnell C, Codd M, Keelan E, Green A, O'Neill

J, Galvin J, Mahon NG. (2013) 'Family-based cardiac screening in relatives of victims of

sudden arrhythmic death syndrome'. Europace .

Palles C, Cazier JB, Howarth KM, Domingo E, Jones AM, Broderick P, Kemp Z, Spain

SL, Almeida EG, Salguero I, Sherborne A, Chubb D, Carvajal-Carmona LG, Ma Y,

Kaur K, Dobbins S, Barclay E, Gorman M, Martin L, Kovac MB, Humphray S; CORGI

Consortium; WGS500 Consortium, Lucassen A, Holmes CC, Bentley D, Donnelly P,

Taylor J, Petridis C, Roylance R, Sawyer EJ, Kerr DJ, Clark S, Grimes J, Kearsey SE,

Thomas HJ, McVean G, Houlston RS, Tomlinson I. (2013) 'Germline mutations

affecting the proofreading domains of POLE and POLD1 predispose to colorectal

adenomas and carcinomas'. Nature Genetics .

Flanagan, SE,Xie, WJ,Caswell, R,Damhuis, A,Vianey-Saban, C,Akcay, T,Darendeliler,

F,Bas, F,Guven, A,Siklar, Z,Ocal, G,Berberoglu, M,Murphy, N,O'Sullivan, M,Green,

A,Clayton, PE,Banerjee, I,Clayton, PT,Hussain, K,Weedon, MN,Ellard, S (2013) 'Next-

Generation Sequencing Reveals Deep Intronic Cryptic ABCC8 and HADH Splicing

Founder Mutations Causing Hyperinsulinism by Pseudoexon Activation'. American

Journal of Human Genetics, 92 :131-136.

Dr Jana Haase

Malynn, S,Campos-Torres, A,Moynagh, P,Haase, J (2013) 'The Pro-inflammatory

Cytokine TNF-alpha Regulates the Activity and Expression of the Serotonin Transporter

(SERT) in Astrocytes'. Neurochemical Research, 38 :694-704.

Dr Chandralal Hewage

Hewage CM, Venneti KC (2013) 'Structural aspects of gut peptides with therapeutic

potential for type 2 diabetes'. Chemmedchem, 8 (4):560-567.

Kenny, O., Smyth, T. J., Hewage, C. M., Brunton, N. P (2013) 'Antioxidant properties

and quantitative UPLC-MS analysis of phenolic compounds from extracts of fenugreek

(Trigonella foenum-graecum) seeds and bitter melon (Momordica charantia) fruit'. Food

Chemistry, 141 (4):4295-4302.

Professor Desmond Gerard Higgins

Hughes G.M., Gang L., Murphy W.J., Higgins D.G., Teeling E.C. (2013) 'Using





Illumina Next Generation Sequencing Technologies to Sequence Multigene Families in

de novo Species'. Molecular Ecology Resources, 13 (3):510-512.

Sievers, F,Dineen, D,Wilm, A,Higgins, DG (2013) 'Making automated multiple

alignments of very large numbers of protein sequences'. Bioinformatics, 29 :989-995.

Mulrane L, Madden SF, Brennan DJ, Gremel G, McGee SF, McNally S, Martin F,

Crown JP, Jirstr�m K, Higgins DG, Gallagher WM, O'Connor DP (2012) 'miR-187 Is

an Independent Prognostic Factor in Breast Cancer and Confers Increased Invasive

Potential In Vitro'. Clinical Cancer Research .


Forman, CJ,Wang, N,Yang, ZY,Mowat, CG,Jarvis, S,Durkan, C,Barker, PD (2013)

'Probing the location of displayed cytochrome b(562) on amyloid by scanning tunnelling

microscopy'. Nanotechnology, 24 .

Dr Breand�n Kennedy

Collery RF, Cederlund ML, Kennedy BN (2013) 'Transgenic zebrafish expressing

mutant human RETGC-1 exhibit aberrant cone and rod morphology'. Experimental Eye

Research .

Jun Yin1, Lisa Shine2, Francis Raycroft3, Sudhakar Deeti2, Alison Reynolds2, Kristin

M. Ackerman3, Antonino Glaviano2, Sean O'Farrell2, Olivia O'Leary2, Claire Kilty2,

Ciaran Kennedy2, Sarah McLoughlin2, Megan Rice2, Eileen Russell2, Desmond G.

Higgins1, David R. Hyde3 & Breandan N. Kennedy2* (2012) 'INHIBITION OF THE

PIM1 ONCOGENE RESULTS IN DIMINISHED VISUAL FUNCTION'. PLoS ONE .

Professor Boris Kholodenko

Volinsky N, Kholodenko BN (2013) 'Complexity of receptor tyrosine kinase signal

processing'. Cold Spring Harbor perspectives in biology, 5 (8).

Nguyen LK, Kolch W, Kholodenko BN (2013) 'When ubiquitination meets

phosphorylation: a systems biology perspective of EGFR/MAPK signalling'. Cell

communication and signaling : CCS, 11 .

Santra T, Kolch W, Kholodenko BN (2013) 'Integrating Bayesian variable selection with

Modular Response Analysis to infer biochemical network topology'. BMC systems

biology, 7 .

Reiterer V, Fey D, Kolch W, Kholodenko BN, Farhan H (2013) 'Pseudophosphatase

STYX modulates cell-fate decisions and cell migration by spatiotemporal regulation of

ERK1/2'. Proceedings of the National Academy of Sciences of the United States of

America, 110 (31):1-43.

Baljuls A, Kholodenko BN, Kolch W. (2013) 'It takes two to tango--signalling by

dimeric Raf kinases'. Molecular BioSystems .

Nguyen LK, Cavadas MA, Scholz CC, Fitzpatrick SF, Bruning U, Cummins EP,

Tambuwala MM, Manresa MC, Kholodenko BN, Taylor CT, Cheong A (2013) 'A

dynamic model of the hypoxia-inducible factor 1-alpha (HIF-1a) network'. Journal of

Cell Science .

Birtwistle MR, Kriegsheim Av, Dobrzy�ski M, Kholodenko BN, Kolch W (2012)

'Mammalian protein expression noise: scaling principles and the implications for

knockdown experiments'. Molecular BioSystems, 8 (11):3068-3076.

Professor Therese Kinsella





Birrane G, Mulvaney EP, Pal R, Kinsella BT, Kocher O. (2013) 'Molecular analysis of

the prostacyclin receptor's interaction with the PDZ1 domain of its adaptor protein

PDZK1'. PLoS ONE, 8 (2).

Turner EC, Kinsella BT. (2012) 'Regulation of the Human Prostacyclin Receptor Gene

by the Cholesterol-responsive Sterol Response Element Binding Protein (SREBP) 1'.

Journal of lipid research, 53 (11):2390-2402.

Professor Ulla Knaus

Hayes, P; Knaus, UK (2012) 'Balancing ROS in the epigenome: NADPH oxidases as

target and perpetrator'. Antioxidants & Redox Signaling .

Professor Walter Kolch

Santra, T., Kolch, W., Kholodenko, B. N. (2013) 'Integrating Bayesian variable selection

with Modular Response Analysis to infer biochemical network topology'. BMC Syst

Biol, 7 .

Nguyen, L. K., Kolch, W., Kholodenko, B. N. (2013) 'When ubiquitination meets

phosphorylation: a systems biology perspective of EGFR/MAPK signalling'. Cell

Commun Signal, 11 .

Reiterer, V., Fey, D., Kolch, W., Kholodenko, B. N., Farhan, H. (2013)

'Pseudophosphatase STYX modulates cell-fate decisions and cell migration by

spatiotemporal regulation of ERK1/2'. Proc Natl Acad Sci U S A, 110 (31).

Baljuls A, Kholodenko BN, Kolch W (2013) 'It takes two to tango--signalling by

dimeric Raf kinases'. Molecular BioSystems, 9 (4):551-558.

Preisinger, C., Schwarz, J. P., Bleijerveld, O. B., Corradini, E., Muller, P. J., Anderson,

K. I., Kolch, W., Scholten, A., Heck, A. J. (2013) 'Imatinib-dependent tyrosine

phosphorylation profiling of Bcr-Abl-positive chronic myeloid leukemia cells'.

Leukemia, 27 (3):743-6.

Rauch, J., Kolch, W., Laurent, S., Mahmoudi, M. (2013) 'Big Signals from Small

Particles: Regulation of Cell Signaling Pathways by Nanoparticles'. Chem Rev .

Doyle, B,Hagan, S,Al-Mulla, F,Scott, L,Harden, S,Paul, J,Mulcahy, H,Murray,

GI,Sheahan, K,O'Sullivan, J,Kolch, W (2013) 'Raf kinase inhibitor protein expression

combined with peritoneal involvement and lymphovascular invasion predicts prognosis

in Dukes' B colorectal cancer patients'. Histopathology, 62 :505-510.

Romano, D,Maccario, H,Doherty, C,Quinn, NP,Kolch, W,Matallanas, D (2013) 'The

Differential Effects of Wild-Type and Mutated K-Ras on MST2 Signaling Are

Determined by K-Ras Activation Kinetics'. Molecular and Cellular Biology, 33 :1859-

1868.

Brown, KM,Day, JP,Huston, E,Zimmermann, B,Hampel, K,Christian, F,Romano,

D,Terhzaz, S,Lee, LCY,Willis, MJ,Morton, DB,Beavo, JA,Shimizu-Albergine,

M,Davies, SA,Kolch, W,Houslay, MD,Baillie, GS (2013) 'Phosphodiesterase-8A binds

to and regulates Raf-1 kinase'. Proceedings of the National Academy of Sciences of the

United States of America, 110 :1533-1542.

Birtwistle MR, Kriegsheim Av, Dobrzy�ski M, Kholodenko BN, Kolch W (2012)

'Mammalian protein expression noise: scaling principles and the implications for

knockdown experiments'. Molecular BioSystems, 8 (11):3068-3076.

Professor Carel Le Roux




Neff, KJH,le Roux, CW (2013) 'Bariatric surgery: a best practice article'. J Clin Pathol,

66 :90-98.

Seyfried, F,Li, JV,Miras, AD,Cluny, NL,Lannoo, M,Fenske, WK,Sharkey,

KA,Nicholson, JK,le Roux, CW,Holmes, E (2013) 'Urinary Phenotyping Indicates

Weight Loss-Independent Metabolic Effects of Roux-en-Y Gastric Bypass in Mice'.

Journal of Proteome Research, 12 :1245-1253.

Iesari, S,le Roux, CW,De Gaetano, A,Manco, M,Nanni, G,Mingrone, G (2013) 'Twenty-

Four Hour Energy Expenditure and Skeletal Muscle Gene Expression Changes After

Bariatric Surgery'. Journal Of Clinical Endocrinology & Metabolism, 98 :321-327.

Papamargaritis, D,le Roux, CW,Sioka, E,Koukoulis, G,Tzovaras, G,Zacharoulis, D

(2013) 'Changes in gut hormone profile and glucose homeostasis after laparoscopic

sleeve gastrectomy'. Surgery For Obesity And Related Diseases, 9 :192-201.

Professor Gil Lee

Fields C, O'Connell D, Xiao S, Lee GU, Billiald P, Muzard J (2013) 'Creation of

recombinant antigen-binding molecules derived from hybridomas secreting specific

antibodies'. Nature protocols, 8 (6):1125-1148.

J.J. O'Mahony, M. Platt, D. Kilinc, and G. Lee (2013) 'Synthesis of Superparamagnetic

Particles with Tunable Morphologies: The Role of Nanoparticle-Nanoparticle

Interaction'. Langmuir : the ACS journal of surfaces and colloids, 29 :2546-2553.

Y. Zhang, Q. Wang, B. Ashall, D. Zerulla, and G.U Lee (2013) 'Magnetic-Plasmonic

Dual Modulated FePt-Au Ternary Heterostructured Nanorods as a Promising Nano-

Bioprobe'. Advanced Materials, 25 :502-502.

Devrim Kilinc and Gil Lee (2013) 'Advances in Magnetic Tweezers for Single Molecule

and Cell Biophysics'. Integrative Biology .

Zhang, Y, Ashall, B, Doyle, G, Zerulla, D and Lee, GU (2012) 'Highly Ordered Fe−Au

Heterostructured Nanorod Arrays and Their Exceptional Near-Infrared Plasmonic

Signature'. Langmuir .

Kilinc, D, Blasiak, A, O'Mahony, JJ, Suter, DM, and Lee, GU (2012) 'Magnetic

Tweezers-Based Force Clamp Reveals Mechanically Distinct apCAM Domain

Interactions'. Biophysical Journal, 103 (6):1120-1129.

Professor Brendan Loftus

�Maoil�idigh DS, Wuest SE, Rae L, Raganelli A, Ryan PT, Kwasniewska K, Das P,

Lohan AJ, Loftus B, Graciet E, Wellmer F (2013) 'Control of reproductive floral organ

identity specification in Arabidopsis by the C function regulator AGAMOUS'. Plant

Cell .

Nalpas, N. C., Park, S. D., Magee, D. A., Taraktsoglou, M., Browne, J. A., Conlon, K.

M., Rue-Albrecht, K., Killick, K. E., Hokamp, K., Lohan, A. J., Loftus, B. J., Gormley,

E., Gordon, S. V., Machugh, D. E. (2013) 'Whole-transcriptome, high-throughput RNA

sequence analysis of the bovine macrophage response to Mycobacterium bovis infection

in vitro'. BMC Genomics, 14 (1).

Firdessa R, Berg S, Hailu E, Schelling E, Gumi B, Erenso G, Gadisa E, Kiros T,

Habtamu M, Hussein J, Zinsstag J, Robertson BD, Ameni G, Lohan AJ, Loftus B,

Comas I, Gagneux S, Tschopp R, Yamuah L, Hewinson G, Gordon SV, Young DB,

Aseffa A. (2013) 'Mycobacterial lineages causing pulmonary and extrapulmonary

tuberculosis, Ethiopia'. Emerging Infectious Diseases .



Clarke M, Lohan AJ, Liu B, Lagkouvardos I, Roy S, Zafar N, Bertelli C, Schilde C,

Kianianmomeni A, Burglin TR, Frech C, Turcotte B, Kopec KO, Synnott JM, Choo C,

Paponov I, Finkler A, Soon Heng Tan C, Hutchins AP, Weinmeier T, Rattei T, Chu JS,

Gimenez G, Irimia M, Rigden DJ, Fitzpatrick DA, Lorenzo-Morales J, Bateman A, Chiu

CH, Tang P, Hegemann P, Fromm H, Raoult D, Greub G, Miranda-Saavedra D, Chen

N, Nash P, Ginger ML, Horn M, Schaap P, Caler L, Loftus B (2013) 'Genome of

Acanthamoeba castellanii highlights extensive lateral gene transfer and early evolution

of tyrosine kinase signaling'. Genome Biology .

Martin-Navarro, CM,Lorenzo-Morales, J,Machin, RP,Lopez-Arencibia, A,Garcia-

Castellano, JM,de Fuentes, I,Loftus, B,Maciver, SK,Valladares, B,Pineroa, JE (2013)

'Inhibition of 3-Hydroxy-3-Methylglutaryl-Coenzyme A Reductase and Application of

Statins as a Novel Effective Therapeutic Approach against Acanthamoeba Infections'.

Antimicrobial Agents and Chemotherapy, 57 :375-381.

Nalpas, NC,Park, SDE,Magee, DA,Taraktsoglou, M,Browne, JA,Conlon, KM,Rue-

Albrecht, K,Killick, KE,Hokamp, K,Lohan, AJ,Loftus, BJ,Gormley, E,Gordon,

SV,MacHugh, DE (2013) 'Whole-transcriptome, high-throughput RNA sequence

analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro'.

BMC Genomics, 14 .



Cagney G, Bracken AP (2012) 'Polycomb PHF19 binds H3K36me3 and recruits PRC2


structural & molecular biology .

Professor Patrick Lonergan

Forde N, Mehta JP, McGettigan PA, Mamo S, Bazer FW, Spencer TE, Lonergan P

(2013) 'Alterations in expression of endometrial genes coding for proteins secreted into

the uterine lumen during conceptus elongation in cattle'. Genomics, 14 .

Scully S, Maillo V, Duffy P, Kelly A, Crowe M, Rizos D, Lonergan P (2013) 'The

Effect of Lactation on Post-Partum Uterine Involution in Holstein Dairy Cows'.

Reproduction in domestic animals = Zuchthygiene, 48 :888-892.

Matoba S, Bender K, Fahey AG, Mamo S, Brennan L, Lonergan P, Fair T (2013)

'Predictive value of bovine follicular components as markers of oocyte developmental

potential'. Reproduction, fertility, and development .

Maillo V, Duffy P, O'Hara L, de Frutos C, Kelly AK, Lonergan P, Rizos D (2013)

'Effect of hCG administration during corpus luteum establishment on subsequent corpus

luteum development and circulating progesterone concentrations in beef heifers'.

Reproduction, fertility, and development .

Mossa, F,Carter, F,Walsh, SW,Kenny, DA,Smith, GW,Ireland, JLH,Hildebrandt,

TB,Lonergan, P,Ireland, JJ,Evans, ACO (2013) 'Maternal Undernutrition in Cows

Impairs Ovarian and Cardiovascular Systems in Their Offspring'. Biology of

Reproduction, 88 .

Spencer TE, Forde N, Dorniak P, Hansen TR, Romero JJ, Lonergan P (2013)

'Conceptus-derived prostaglandins regulate gene expression in the endometrium prior to

pregnancy recognition in ruminants'. Reproduction (Cambridge, England), 146 (4):377-

387.

Forde, N,Mehta, JP,Minten, M,Crowe, MA,Roche, JF,Spencer, TE,Lonergan, P (2012)

'Effects of Low Progesterone on the Endometrial Transcriptome in Cattle'. Biology of


http://genomebiology.com/2013/14/2/R11/abstract

Reproduction, 87 (5):124, 1-11.

Sikora KM, Magee DA, Berkowicz EW, Lonergan P, Evans AC, Carter F, Comte A,

Waters SM, Machugh DE, Spillane C (2012) 'PHLDA2 is an imprinted gene in cattle'.

Animal Genetics, 43 (5):587-590.




Beltman ME, Forde N, Lonergan P, Crowe MA. (2012) 'Altered endometrial immune

gene expression in beef heifers with retarded embryos'. Reproduction Fertility and

Development .

Hutchinson IA, Dewhurst RJ, Evans AC, Lonergan P, Butler ST (2012) 'Effect of grass

dry matter intake and fat supplementation on progesterone metabolism in lactating dairy

cows'. Theriogenology, 78 (4):878-886.

Forde N, Carter F, di Francesco S, Prakash Mehta J, Garcia-Herreros M, Gad AY,

Tesfaye D, Hoelker M, Schellander K, Lonergan P (2012) 'Endometrial response of beef

heifers on Day 7 following insemination to supra-physiological concentrations of

progesterone associated with superovulation'. Genomics .

Mamo S, Rizos D, Lonergan P (2012) 'Transcriptomic changes in the bovine conceptus

between the blastocyst stage and initiation of implantation'. Animal Reproduction

Science, 134 (1-2):56-63.

Forde N, Duffy GB, McGettigan PA, Browne JA, Mehta JP, Kelly AK, Mansouri-Attia

N, Sandra O, Loftus BJ, Crowe MA, Fair T, Roche JF, Lonergan P, Evans AC. (2012)

'Evidence for an early endometrial response to pregnancy in cattle: both dependent upon

and independent of interferon tau'. Physiolgical Genomics, 44 (16):799-810.

Gath, VP, Crowe, MA, O'Callaghan, D, Boland, MP, Duffy, P, Lonergan, P, Mulligan,

FJ (2012) 'Effects of diet type on establishment of pregnancy and embryo development

in beef heifers'. Animal Reproduction Science, 133 (3):139-145.

Professor David MacHugh

Orr, N., Hill, E. W., Gu, J., Govindarajan, P., Conroy, J., van Grevenhof, E. M., Ducro,

B. J., van Arendonk, J. A., Knaap, J. H., van Weeren, P. R., Machugh, D. E., Ennis, S.,

Brama, P. A. (2013) 'Genome-wide association study of osteochondrosis in the

tarsocrural joint of Dutch Warmblood horses identifies susceptibility loci on

chromosomes 3 and 10'. Anim Genet, 44 (4):408-12.

Nalpas, N. C., Park, S. D., Magee, D. A., Taraktsoglou, M., Browne, J. A., Conlon, K.

M., Rue-Albrecht, K., Killick, K. E., Hokamp, K., Lohan, A. J., Loftus, B. J., Gormley,

E., Gordon, S. V., Machugh, D. E. (2013) 'Whole-transcriptome, high-throughput RNA

sequence analysis of the bovine macrophage response to Mycobacterium bovis infection

in vitro'. BMC Genomics, 14 (1).

B McGivney, J Browne, R Fonseca, D MacHugh, R Whiston, L Katz, E Hill ; (2012)

'MSTN genotypes in Thoroughbred horses influence skeletal muscle gene expression

and racetrack performance'. Animal Genetics, 43 (6).

Hill, Emmeline W., Ryan, Donal P., MacHugh, David E. (2012) 'Horses for Courses: a

DNA-based Test for Race Distance Aptitude in Thoroughbred Racehorses'. Recent

patents on DNA & gene sequences, 6 (3):203-8.





Waters, Sinead M., Coyne, Gerard S., Kenny, David A., MacHugh, David E., Morris,

Dermot G. (2012) 'Dietary n-3 polyunsaturated fatty acid supplementation alters the

expression of genes involved in the control of fertility in the bovine uterine

endometrium'. Physiological Genomics, 44 (18):878-888.

Dr Patricia Maguire

Macaulay IC, Thon JN, Tijssen MR, Steele BM, MacDonald BT, Meade G, Burns P,

Rendon A, Salunkhe V, Murphy RP, Bennett C, Watkins NA, He X, Fitzgerald DJ,

Italiano JE Jr, Maguire PB (2013) 'Canonical Wnt signaling in megakaryocytes regulates

proplatelet formation'. Blood, 121 (1):188-196.

Professor Jonathan Malthouse

Howe N, Ceruso M, Spink E, Malthouse JP; (2012) 'pH stability of the stromelysin-1

catalytic domain and its mechanism of interaction with a glyoxal inhibitor'. Biochimica

et biophysica acta, 1814 (10):1394-1403.

Professor Finian Martin

Corcoran JB, McCarthy S, Griffin B, Gaffney A, Bhreathnach U, Börgeson E, Hickey

FB, Docherty NG, Higgins DF, Furlong F, Martin F, Godson C, Murphy M (2013)

'IHG-1 must be localised to mitochondria to decrease Smad7 expression and amplify

TGF-β1-induced fibrotic responses'. Biochimica et biophysica acta, 1833 (8):1969-1978.




Brennan EP, Nolan KA, Börgeson E, Gough OS, McEvoy CM, Docherty NG, Higgins

DF, Murphy M, Sadlier DM, Ali-Shah ST, Guiry PJ, Savage DA, Maxwell AP, Martin

F, Godson C (2013) 'Lipoxins attenuate renal fibrosis by inducing let-7c and suppressing

TGFβR1'. Journal of the American Society of Nephrology, 24 (4):627-637.

Brennan, EP,Nolan, KA,Borgeson, E,Gough, OS,McEvoy, CM,Docherty, NG,Higgins,

DF,Murphy, M,Sadlier, DM,Ali-Shah, ST,Guiry, PJ,Savage, DA,Maxwell, AP,Martin,

F,Godson, C (2013) 'Lipoxins Attenuate Renal Fibrosis by Inducing let-7c and

Suppressing TGF beta R1'. J AM SOC NEPHROL, 24 :627-637.

Professor Fionnuala McAuliffe

Ciara A. McGowan, Fionnuala M. McAuliffe (2012) 'Maternal dietary patterns and

associated nutrient intakes during each trimester of pregnancy'. Public Health Nutrition .

Daniel Dowling, Fionnuala McAuliffe (2012) 'The molecular mechanisms of offspring

effects from diabetic and obese pregnancy'. Obesity Facts .

Higgins MF, Brazil D, Foley M, McAuliffe FM (2012) 'Maternal and fetal leptin in type

1 and type 2 diabetic pregnancies'. International journal of gynaecology and obstetrics:

the official organ of the International Federation of Gynaecology and Obstetrics .

Walsh C, Robson M, McAuliffe FM (2012) 'Operative delivery and adverse outcome'.

Obstetrics & Gynecology .

Treacy A, Higgins M, Kearney JM, McAuliffe FM, Mooney EE (2012) 'Delayed villous

maturation of the placenta, quantitative assessment in different cohorts'. Pediatric And

Developmental Pathology .

Daniel Dowling, Niamh Corrigan, Paul Downey, Fionnuala McAuliffe (2012)





'Inflammatory protein expression in adolescent and adult offspring of type 1 diabetic

mothers'. Birth Defects Res A Clin Mol Teratol .

Nicola Maher, Fionnuala McAuliffe, Michael Foley (2012) 'The benefit of early

treatment without rescreening in women with a history of gestational diabetes'. The

journal of maternal-fetal & neonatal medicine : the official journal of the European

Association of Perinatal Medicine, the Federation of Asia and Oceania Perinatal

Societies, the International Society of Perinatal Obstetricians .

Martina Wallace, Evelyn Cottell, Michael J Gibney, Fionnuala M McAuliffe, Mary

Wingfield, Lorraine Brennan (2012) 'Prediction of oocyte developmental potential and

pregnancy outcome using metabolomics biomarkers'. Fertility and Sterility .

Niamh Corrigan, Ann Treacy, Derek P. Brazil, Fionnuala M. McAuliffe (2012)

'Cardiomyopathy and diastolic dysfunction in the embryo and neonate of a type 1

diabetic mouse model'. Reproductive Sciences .

Ciara A. McGowan, Sinead Curran, Fionnuala M. McAuliffe (2012) 'Relative validity of

a food frequency questionnaire to assess nutrient intake during pregnancy'. Maternal &

Child Nutrition .

Jennifer M Walsh, Mark Kilbane, Ciara A McGowan, Malachi J McKenna, Fionnuala M

McAuliffe (2012) 'Pregnancy in dark winters: Implications for fetal bone growth?'.

Fertility and Sterility .

Mark P Hehir, Henriette Laursen, Mary F Higgins, Donal J Brennan, Darran P

O'Connor, Fionnuala M McAuliffe (2012) '. Ghrelin concentrations in maternal and cord

blood of Type 1 diabetic and non-diabetic pregnancies at term'. Endocrine .

Unterscheider J, Geary MP, Daly S, McAuliffe FM, Kennelly MM, Dornan J, Morrison

JJ, Burke G, Francis A, Gardosi J, Malone FD. (2012) 'The customized fetal growth

potential: a standard for Ireland'. Eur J Obstet Gynecol Reprod Biol .

Jennifer M Walsh, Ciara A McGowan, Mark Kilbane, Malachi J McKenna, Fionnuala M

McAuliffe (2012) 'Vitamin D, glucose homeostasis and fetal growth, a complex

relationship'. Reproductive Sciences .

Dr Amanda McCann

Aliu, E,Archambault, S,Arlen, T,Aune, T,Beilicke, M,Benbow, W,Bouvier, A,Buckley,

JH,Bugaev, V,Cesarini, A,Ciupik, L,Collins-Hughes, E,Connolly, MP,Cui,

W,Dickherber, R,Duke, C,Dumm, J,Dwarkadas, VV,Errando, M,Falcone, A,Federici,

S,Feng, Q,Finley, JP,Finnegan, G,Fortson, L,Furniss, A,Galante, N,Gall, D,Gillanders,

GH,Godambe, S,Gotthelf, EV,Griffin, S,Grube, J,Gyuk, G,Hanna, D,Holder, J,Hughes,

G,Humensky, TB,Kaaret, P,Kargaltsev, O,Karlsson, N,Khassen, Y,Kieda,

D,Krawczynski, H,Krennrich, F,Lang, MJ,Lee, K,Madhavan, AS,Maier, G,Majumdar,

P,McArthur, S,McCann, A,Moriarty, P,Mukherjee, R,Nelson, T,de Bhroithe, AO,Ong,

RA,Orr, M,Otte, AN,Park, N,Perkins, JS,Pohl, M,Prokoph, H,Quinn, J,Ragan, K,Reyes,

LC,Reynolds, PT,Roache, E,Roberts, M,Saxon, DB,Schroedter, M,Sembroski,

GH,Slane, P,Smith, (2013) 'DISCOVERY OF TeV GAMMA-RAY EMISSION FROM

CTA 1 BY VERITAS'. The Astrophysical Journal, 764 .

Zhou, ZM,McCann, A,Litrup, E,Murphy, R,Cormican, M,Fanning, S,Brown,

D,Guttman, DS,Brisse, S,Achtman, M (2013) 'Neutral Genomic Microevolution of a

Recently Emerged Pathogen, Salmonella enterica Serovar Agona'. PLoS Genetics, 9 .

Dr Margaret McGee

O'Donovan DS, MacFhearraigh S, Whitfield J, Swigart LB, Evan GI, Mc Gee MM



(2013) 'Sequential Cdk1 and Plk1 phosphorylation of protein tyrosine phosphatase 1B

promotes mitotic cell death'. Cell Death & Disease .

Dr Fiona McGillicuddy

Finucane OM, Reynolds CM, McGillicuddy FC, Roche HM (2012) 'Insights into the

role of macrophage migration inhibitory factor in obesity and insulin resistance'. The

Proceedings of the Nutrition Society, 71 (4):622-633.

Börgeson E, McGillicuddy FC, Harford KA, Corrigan N, Higgins DF, Maderna P,

Roche HM, Godson C (2012) 'Lipoxin A4 attenuates adipose inflammation'. FASEB

Journal, 26 (10):4287-4294.

Oliver, E., McGillicuddy, F. C., Harford, K. A., Reynolds, C. M., Phillips, C. M.,

Ferguson, J. F., Roche, H. M. (2012) 'Docosahexaenoic acid attenuates macrophage-

induced inflammation and improves insulin sensitivity in adipocytes-specific differential

effects between LC n-3 PUFA'. J Nutr Biochem, 23 (9):1192-200.

Professor Paul McLoughlin

Lili Li*, Katherine Howell*, Michelle Sands, Mark Banahan, Stephen Frohlich, Simon

C Rowan, Rois�n Neary, Donal Ryan, Paul McLoughlin (2013) 'The α and Δ isoforms

of CREB1 are required to maintain normal pulmonary vascular resistance'. PLoS ONE .

McLoughlin P, Ward JP (2013) 'Hypoxic pulmonary hypertension; the load on the right

ventricle'. Experimental Physiology, 98 (8):1244-1246.

Fr�hlich S, Boylan J, McLoughlin P (2013) 'Hypoxia-induced inflammation in the

lung: a potential therapeutic target in acute lung injury?'. American Journal of

Respiratory Cell and Molecular Biology, 48 (3):271-279.

Dr Tara McMorrow

H. Cassidy, J.Slyne, H. Frain, C. Slattery , M.P. Ryan, T. McMorrow * (2013) 'High-

Throughput Proteomic Approaches to the Elucidation of Potential'. Proteome science, 1

(2):159-179.

Sumayao R, McEvoy B, Martin-Martin N, McMorrow T, Newsholme P. (2013) 'Cystine

dimethylester loading promotes oxidative stress and a reduction in ATP independent of

lysosomal cystine accumulation in a human proximal tubular epithelial cell line'.

Experimental Physiology, 98 (10):1505-1517.

Radford R, Frain H, Ryan MP, Slattery C, McMorrow T. (2013) 'Mechanisms of

chemical carcinogenesis in the kidneys'. International journal of molecular sciences, 14

(10):19416-19433.

Limonciel A, Wilmes A, Aschauer L, Radford R, Bloch KM, McMorrow T, Pfaller W,

van Delft JH, Slattery C, Ryan MP, Lock EA, Jennings P. (2012) 'Oxidative stress

induced by potassium bromate exposure results in altered tight junction protein

expression in renal proximal tubule cells'. Archives of Toxicology, 86 (11):1741-1751.

Professor Walter McNicholas

Zaffaroni A, Kent B, O'Hare E, Heneghan C, Boyle P, O'Connell G, Pallin M, de Chazal

P, McNicholas WT. (2013) 'Assessment of sleep-disordered breathing using a non-

contact bio-motion sensor'. Journal of Sleep Research, 22 :231-236.

Levy P, McNicholas WT. (2013) 'Sleep apnoea and hypertension: time for

recommendations'. European Respiratory Journal, 41 :505-506.






Parati G, Lombardi C, Hedner J, Bonsignore MR, Grote L, Tkacova R, L�vy P, Riha

R, Bassetti C, Narkiewicz K, Mancia G, McNicholas WT; EU COST Action B26

members. (2013) 'Recommendations for the management of patients with obstructive

sleep apnoea and hypertension'. European Respiratory Journal, 41 :523-538.

McSharry DG, Ryan S, Calverley P, Edwards JC, McNicholas WT. Respirology. 2012

Oct;17(7):1119-24. (2012) 'Sleep quality in chronic obstructive pulmonary disease'.

Respirology (Carlton, Vic.), 17 :1119-1124.

Professor Wim Meijer

Liu, L; Tharmalingam, T; Maischberger, E; Miranda CasoLuengo, R; Meijer, WG;

Rudd, PM; Irwin, JA (2013) 'A HPLC-based glycoanalytical protocol allows the use of

natural O-glycans derived from glycoproteins as substrates for glycosidase discovery

from microbial culture'. Glycoconjugate journal, 30 (8):791-800.

Sinigalliano, C.D., J. Erven, L.C. van de Werfhorst, B. Badgley, E. Balleste, J.

Bartkowiak, A.B. Boehm, M. Byappanahalli, K.D. Goodwin, M. Gourmelon, J. Griffith,

P.A. Holden, J. Jay, B. Layton, C. Lee, J. Lee, W.G. Meijer, R. Noble, M. Raith, H.

Ryu, M/J. Sadowsky, A. Schriewer, D. Wanless, R. Whitman, S. Wuertz, J.W. Santo

Domingo (2013) 'Multi-laboratory evaluations of the performance of Catellicoccus

marimammalium PCR assays developed to target gull fecal sources'. Water Research, 47

(18):6883-6896.

Schriewer, A; Goodwin, KD; Sinigalliano, CD; Cox, A; Wanless, D; Bartkowiak, J;

Ebentier, DL; Hanley, KT; Ervin, J; Deering, LA; Shanks, OC; Peed, LA; Meijer, WG;

Griffith, JF; SantoDomingo, J; Jay, JA; Holden, PA; Wuertz, S (2013) 'Performance

evaluation of canine-associated Bacteroidales assays in a multi-laboratory comparison

study'. Water Research, 47 (18):6909-6920.

Raith, MR; Kelty, CA; Griffith, JF; Schriewer, A; Wuertz, S; Mieszkin, S; Gourmelon,

M; Reischer, GH; Farnleitner, AH; Ervin, JS; Holden, PA; Ebentier, DL; Jay, JA; Wang,

D; Boehm, AB; Aw, TG; Rose, JB; Balleste, E; Meijer, WG; Sivaganesan, M; Shanks,

O (2013) 'Comparison of PCR and quantitative real-time PCR methods for the

characterization of ruminant and cattle fecal pollution sources'. Water Research, 47

(18):6921-6928.

Layton, BA; Cao, Y; Ebentier, DL; Hanley, K; Ballest�, E; Brand�o, J;

Byappanahalli, M; Converse, R; Farnleitner, AH; Gentry-Shields, J; Gidley, ML;

Gourmelon, M; Lee, CS; Lee, J; Lozach, S; Madi, T; Meijer, WG; Noble, R; Peed, L;

Reischer, GH; Rodrigues, R; Rose, JB; Schriewer, A; Sinigalliano, C; Srinivasan, S;

Stewart, J; Van De Werfhorst, LC; Wang, D; Whitman, R; Wuertz, S; Jay, J; Holden,

PA; Boehm, AB; Shanks, O; Griffith, JF (2013) 'Performance of human fecal anaerobe-

associated PCR-based assays in a multi-laboratory method evaluation study'. Water

Research, 47 (18):6897-6908.

Cauchard, S; Gigu�re, S; Venner, M; Muscatello, G; Cauchard, J; Cohen, ND; Haas,

A; Hines, SA; Hondalus, MK; Horohov, DW; Meijer, WG; Prescott, JF; V�zquez-

Boland, J (2013) 'Rhodococcus equi research 2008-2012: Report of the Fifth

International Havemeyer Workshop'. Equine Veterinary Journal, 45 :523-526.

Maischberger, E; Cummins, CA; Fitzpatrick, E; Gallagher, ME; Worrall, S;Rousseau,

K; Thornton, DJ; Meijer, WG; Miranda-CasoLuengo, R; Duggan, VE;Carrington, SD;

Irwin, JA; Reid, CJ (2013) ''The expression of mucin genes and the presence of mucin

gene products in the equine endometrium''. Research in Veterinary Science, 95 (1):169-

175.


Miranda-CasoLuengo AA, Miranda-CasoLuengo R, Lieggi NT, Luo H, Simpson JC,

Meijer WG (2013) 'A real-time impedance based method to assess Rhodococcus equi

virulence'. PLoS ONE, 8 (3).

Miranda-CasoLuengo, R., G. Coulson, A. Miranda-CasoLuengo, J.A. Vazquez-Boland,

M.K. Hondalus and W.G. Meijer (2012) 'The hydroxamate siderophore rhequichelin is

required for virulence of the pathogenic actinomycete Rhodococcus equi'. Infection and

Immunity, 80 (12):4106-4114.

Professor Grace V T Mulcahy

Stuart P., Golden O., Zintl A., DeWaal, T. Mulcahy G., McCarthy E., Lawton C. (2013)

'A coprological survey of parasites of wild carnivores in Ireland'. Parasitology Research,

112 :3587-3593.

Halova, D,Mulcahy, G,Rafter, P,Turcekova, L,Grant, T,de Waal, T (2013) 'Toxoplasma

gondii in Ireland: Seroprevalence and Novel Molecular Detection Method in Sheep,

Pigs, Deer and Chickens'. Zoonoses and Public Health, 60 :168-173.

Stuart, P,Zintl, A,De Waal, T,Mulcahy, G,Hawkins, C,Lawton, C (2013) 'Investigating

the role of wild carnivores in the epidemiology of bovine neosporosis'. Parasitology,

140 :296-302.

Dr Evelyn Murphy

JP McMorrow, D Crean, M Gogarty, A Smyth, M Connolly, E Cummins, D Veale, U

Fearon, PP Tak, O Fitzgerald, and EP Murphy (2013) 'Tumour Necrosis Factor

inhibition modulates Thrombospondin-1 expression in human inflammatory joint

disease through altered NR4A2 activity'. American Journal of Pathology, 183 (4):1243-

1257.

Ryan SM, McMorrow J, Umerska A, Patel HB, Kornerup KN, Tajber L, Murphy EP,

Perretti M, Corrigan OI, Brayden DJ (2013) 'An intra-articular salmon calcitonin-based

nanocomplex reduces experimental inflammatory arthritis'. Journal of controlled release

: official journal of the Controlled Release Society, 167 (2):120-129.

Dr Keith Murphy

Murphy RP, Murphy KJ, Pickering M (2013) 'The development of myelin repair agents

for treatment of multiple sclerosis: Progress and challenges'. Bioengineered, 4 (3):140-

146.

Borlikova GG, Trejo M, Mably AJ, Mc Donald JM, Frigerio CS, Regan CM, Murphy

KJ, Masliah E, Walsh DM (2013) 'Alzheimer brain-derived amyloid beta-protein

impairs synaptic remodeling and memory consolidation'. Neurobiology of Aging, 34

(5):1315-1327.

Lukasz B, O'Sullivan NC, Loscher JS, Pickering M, Regan CM, Murphy KJ (2013)

'Peripubertal viral-like challenge and social isolation mediate overlapping but distinct

effects on behaviour and brain interferon regulatory factor 7 expression in the adult

Wistar rat'. Brain, behavior, and immunity, 27 (1):71-79.

Dr Jarlath Nally

Jorge Gutierrez, James O'Donovan, Aisling Proctor, Colm Brady, Patricia X. Marques,

Sheila Worrall, Jarlath E. Nally, Maire McElroy, Hugh Bassett, John Fagan, Stephen

Maley, David Buxton, Donal Sammin, Bryan K. Markey (2012) 'Application of

quantitative real-time polymerase chain reaction for the diagnosis of toxoplasmosis and





enzootic abortion of ewes'. Journal of veterinary diagnostic investigation : official

publication of the American Association of Veterinary Laboratory Diagnosticians, Inc,

24 (5):845-853.

Dr Jens Erik Nielsen

Farrell D, Nielsen JE (2012) 'DataPipeline: Automated importing and fitting of large

amounts of biophysical data'. Journal of Computational Chemistry, 33 (29):2357-2362.

Dr Peter O'Brien

S Papakonstantinou, I Berzina, A Lawlor, EJ O'Neill, PJ O'Brien (2013) 'Rapid,

effective and user-friendly immunophenotyping of canine lymphoma using a personal

flow cytometer'. The Irish Veterinary Journal, 66 :1-14.

Silvestrini, P; Piviani, M; Alberola, J; Rodr�guez‐Cort�s, A; Planellas, M; Roura, X;

O'Brien, PJ; Pastor, J (2012) 'Serum cardiac troponin I concentrations in dogs with

leishmaniasis: correlation with age and clinicopathologic abnormalities'. Veterinary

Clinical Pathology, 41 :568-574.




(11):4097-4102.

Koutinas CK, Mylonakis ME, O'Brien PJ, Leontides L, Siarkou VI, Breitschwerdt EB,

Koutinas AF (2012) 'Serum cardiac troponin I concentrations in naturally occurring

myelosuppressive and non-myelosuppressive canine monocytic ehrlichiosis'. Veterinary

Journal, 194 (2):259-261.


Beyond TME Collaborative (2013) 'Consensus statement on the multidisciplinary

management of patients with recurrent and primary rectal cancer beyond total

mesorectal excision planes'. The British journal of surgery, 100 (8):1009-1014.

Rogers AC, Gibbons D, Hanly AM, Hyland JM, O'Connell PR, Winter DC, Sheahan K

(2013) 'Prognostic significance of tumor budding in rectal cancer biopsies before

neoadjuvant therapy'. Modern Pathology .

Hanly AM, Ryan EM, Rogers AC, McNamara DA, Madoff RD, Winter DC; on behalf

of the MERRION Study Group. (2013) 'Multicenter Evaluation of Rectal cancer

ReImaging pOst Neoadjuvant (MERRION) Therapy'. Annals of Surgery .

Burke JP, Doherty GA, O'Connell PR (2013) 'A survey of current practices used to

maintain surgically induced remission following intestinal resection for Crohn's disease'.

Colorectal disease : the official journal of the Association of Coloproctology of Great

Britain and Ireland .

Burke JP, Doherty GA, O'Connell PR (2013) 'A survey of current practices used to

maintain surgically induced remission following intestinal resection for Crohn's disease'.

International Journal of Colorectal Disease, 28 (8):1073-1079.

Kavanagh DO, Carter MC, Keegan D, Doherty G, Smith MJ, Hyland JM, Mulcahy H,

Sheahan K, O' Connell PR, O' Donoghue DP, Winter DC (2013) 'Management of

colorectal cancer in patients with inflammatory bowel disease'. Techniques in

coloproctology .

Evers, J,Buffini, M,Craven, S,O'Connell, PR,Jones, JFX (2013) 'Is there a nitrergic

modulation of the rat external anal sphincter?'. Experimental Physiology, 98 :397-404.




Kavanagh, DO,Nolan, B,Judge, C,Hyland, JMP,Mulcahy, HE,O'Connell, PR,Winter,

DC,Doherty, GA (2013) 'A Comparative Study of Short- and Medium-term Outcomes

Comparing Emergent Surgery and Stenting as a Bridge to Surgery in Patients With

Acute Malignant Colonic Obstruction'. Diseases Of The Colon & Rectum, 56 :433-440.

O'Connell PR. (2013) 'Sacral nerve stimulation for constipation'. The British journal of

surgery, 100 (2):181-181.

Kennelly RP, Rogers AC, Winter DC; Abdominoperineal Excision Study Group. (2013)

'Multicentre study of circumferential margin positivity and outcomes following

abdominoperineal excision for rectal cancer'. The British journal of surgery, 100

(1):160-166.

Larkin JO, O'Connell PR (2012) 'Multivisceral resection for T4 or recurrent colorectal

cancer'. Digestive Diseases, 30 (Supp 2):96-101.

Dr John O'Connor

Corcoran, A., OConnor J.J. (2013) 'Hypoxia inducible factor signaling mechanisms in

the central nervous system'. Acta Physiologica Scandinavica, 208 (4):298-310.

O'Connor JJ (2013) 'Targeting TNF-α in hypoxia and synaptic signaling'. Irish Journal

of Medical Science, 182 (2):157-162.

Fanning RA, McMorrow JP, Campion DP, Carey MF, O'Connor JJ (2012) 'Opioid

mediated activity and expression of mu and delta opioid receptors in isolated human

term non-laboring myometrium'. European Journal of Pharmacology, 689 (1-3):170-

177.

Dr Kevin O'Connor

Narancic T, Radivojevic J, Jovanovic P, Francuski D, Bigovic M, Maslak V, Savic V,

Vasiljevic B, O'Connor KE, Nikodinovic-Runic J (2013) 'Highly efficient Michael-type

addition of acetaldehyde to β-nitrostyrenes by whole resting cells of Escherichia coli

expressing 4-oxalocrotonate tautomerase'. Bioresource Technology, 142 :462-468.

Molloy S, Nikodinovic-Runic J, Martin LB, Hartmann H, Solano F, Decker H,

O'Connor KE. (2013) 'Engineering of a bacterial tyrosinase for improved catalytic

efficiency towards D-tyrosine using random and site directed mutagenesis approaches'.

Biotechnology and Bioengineering, 110 (7):1848-1857.

Brooks SJ, Nikodinovic J, Martin L, Doyle EM, O'Sullivan T, Guiry PJ, Coulombel L,

Li Z, O'Connor KE. (2013) 'Production of a chiral alcohol, 1-(3,4-dihydroxyphenyl)

ethanol, by mushroom tyrosinase'. Biotechnology Letters, 35 (5):779-783.

O'Connor S, Szwej E, Nikodinovic-Runic J, O'Connor A, Byrne AT, Devocelle M,

O'Donovan N, Gallagher WM, Babu R, Kenny ST, Zinn M, Zulian QR, O'Connor KE

(2013) 'The anti-cancer activity of a cationic anti-microbial peptide derived from

monomers of polyhydroxyalkanoate'. Biomaterials, 34 (11):2710-2718.

Babu RP, O'Connor K, Seeram R. (2013) 'Current progress on bio-based polymers and

their future trends'. Progress in Biomaterials, 2 (8).

Nikodinovic-Runic J, Guzik M, Kenny ST, Babu R, Werker A, O Connor KE (2013)

'Carbon-rich wastes as feedstocks for biodegradable polymer (polyhydroxyalkanoate)

production using bacteria'. Advances In Applied Microbiology, Vol 62, 84 :139-200.

Professor Stefan Oscarson

Matei, E,Andre, S,Glinschert, A,Infantino, AS,Oscarson, S,Gabius, HJ,Gronenborn, AM




(2013) 'Fluorinated Carbohydrates as Lectin Ligands: Dissecting Glycan-Cyanovirin

Interactions by Using F-19 NMR Spectroscopy'. Chemistry-A European Journal, 19

:5364-5374.

Dr Francesca Paradisi

Alsafadi, D; Paradisi, F (2013) 'Covalent immobilization of alcohol dehydrogenase

(ADH2) from Haloferax volcanii: how to maximize activity and optimize performance

of halophilic enzymes'. Molecular Biotechnology .

Quaglia, D; Pori, M; Galletti, P; Emer, E; Paradisi, F; Giacomini, D (2013) 'His-tagged

Horse Liver Alcohol Dehydrogenase: Immobilization and application in the bio-based

enantioselective synthesis of (S)-arylpropanols'. Process Biochemistry, 48 :810-818.

O'Reilly, E; Pes, L; Ortin, Y; M�ller-Bunz, H; Paradisi, F (2013) 'Synthesis of a

conformationally constrained delta-amino acid building block'. Amino Acids, 44 :511-

518.

Timpson, L; Liliensiek, A; Alsafadi, D; Sharkey, MA; Liddell, S; Allers, T; Paradisi, F

(2013) 'A comparison of two novel alcohol dehydrogenase enzymes (ADH1 and ADH2)

from the extreme halophile Haloferax volcanii'. Applied Microbiology and

Biotechnology, 97 :195-203.

Alsafadi, D; Paradisi, F (2013) 'Effect of organic solvents on the activity and stability of

halophilic alcohol dehydrogenase (ADH2) from Haloferax volcanii'. Extremophiles, 17

:115-122.

Hackenberg, F; Lally, G; M�ller-Bunz, H; Paradisi, F; Quaglia, D; Streciwilk, W;

Tacke, M (2013) 'Synthesis and biological evaluation of N-heterocyclic carbene-silver(I)

acetate complexes derived from 4,5-ditolyl-imidazole'. Inorganica Chimica Acta, 395

:135-144.

Quaglia, D; Irwin, JA; Paradisi, F (2012) 'Horse Liver Alcohol Dehydrogenase: new

perspectives for an old enzyme'. Molecular Biotechnology, 52 :244-250.

Sharkey, MA; O'Gara, JP; Gordon, SV; Hackenberg, F; Healy, C; Paradisi, F; Patil, S;

Schaible, B; Tacke, M (2012) 'Investigations into the Antibacterial Activity of the

Silver-Based Antibiotic Drug Candidate SBC3'. Antibiotics, 1 :25-28.

Hackenberg, F; Lally, G; M�ller-Bunz, H; Paradisi, F; Quaglia, D; Streciwilk, W;

Tacke, M (2012) 'Novel symmetrically p-benzyl-substituted 4,5-diaryl-imidazole N-

heterocyclic carbene-silver(I) acetate complexes - synthesis and biological evaluation'.

Journal of Organometallic Chemistry, 717 :123-134.

Balducci, D; Conway, PA; Sapuppo, G; M�ller-Bunz, H; Paradisi, F (2012) 'Novel

approach to the synthesis of aliphatic and aromatic alpha-keto acids'. Tetrahedron, 68

:7374-7379.

Dr Andrew Phillips

Dominique F. Schreiber, Crystal O'Connor, Christian Grave, Yannick Ortin, Helge

M�ller-Bunz, and Andrew D. Phillips (2012) 'Application of β-Diketiminato Arene-

Substituted Ru(II) Complexes in Highly Efficient H2 Dehydrocoupling of Amine

Boranes'. Applied Catalysis, 2 :2505-2511.

Professor Ron Pinhasi

von Cramon-Taubadel, N; Stock, JT; Pinhasi, R (2013) 'Skull and limb morphology

differentially track population history and environmental factors in the transition to




agriculture in Europe'. Proceedings of the Royal Society, Series B, doi:

10.1098/rspb.2013.1337 .

Ottoni C, Flink LG, Evin A, Ge�rg C, Cupere BD, Van Neer W, Bartosiewicz L,

Linderholm A, Barnett R, Peters J, Ronny Decorte, R, Waelkens M, Vanderheyden N,

Ricaut F-X, Hoelzel AR, Mashkour M, Karimlu AFM, Seno S, Daujat J, Brock F,

Pinhasi R, Hongo H, Perez-Enciso M, Rasmussen M, Frantz L, Megens F-J. Crooijmans

R, Groenen M, Arbuckle B, Benecke N, Vidarsdottir US, Burger J, Cucchi T, Dobney

K, Larson G (2013) 'Pig domestication and human-mediated dispersal in western

Eurasia revealed through ancient DNA and geometric morphometrics'. Molecular

Biology and Evolution .

Pinhasi, R; Nioradze, M; Tushabramishvilli, N; Lordkipanidze, D; Pleurdeau, D;

Moncel, M-H; Adler, DS; Stringer, S; Higham, TFG (2012) 'New chronology for the

Middle Palaeolithic of the Southern Caucasus suggests early demise of Neanderthals in

this region'. Journal of Human Evolution, Early View .

Moncel, M-H; Pleurdeau, D; Tushubramishvili, N; Yeshurun, R; Agapishvili, T;Pinhasi,

R; Higham, T (2012) 'Preliminary results from the new excavations of the Middle and

Upper Palaeolithic levels at Ortvale Klde-North Chamber (South Caucasus Georgia)'.

Quaternary International, Early View .


Ring RM, Regan CM (2013) 'Captodiamine, a putative antidepressant, enhances

hypothalamic BDNF expression in vivo by synergistic 5-HT2c receptor antagonism and

sigma-1 receptor agonism'. Journal of psychopharmacology (Oxford, England) .

Lukasz B, O'Sullivan NC, Loscher JS, Pickering M, Regan CM, Murphy KJ (2013)

'Peripubertal viral-like challenge and social isolation mediate overlapping but distinct

effects on behaviour and brain interferon regulatory factor 7 expression in the adult

Wistar rat'. Brain, behavior, and immunity, 27 (1):71-79.

Borlikova GG, Trejo M, Mably AJ, Mc Donald JM, Frigerio CS, Regan CM, Murphy

KJ, Masliah E, Walsh DM (2013) (2013) 'Alzheimer brain-derived amyloid β-protein

impairs synaptic remodeling and memory consolidation'. Neurobiology of Aging, 34

:1315-1327.

Foley AF, Gannon S, Rombach-Mullan N, Prendergast A, Barry C, Cassidy AW, Regan

CM (2012) 'Class I histone deacetylase inhibition ameliorates social cognition and cell

adhesion molecule plasticity deficits in a rodent model of autism spectrum disorders'.

Neuropharmacology .

Professor Helen Roche

Phillips CM, Tierney AC, Perez-Martinez P, Defoort C, Blaak EE, Gjelstad IM, Lopez-

Miranda J, Kiec-Klimczak M, Malczewska-Malec M, Drevon CA, Hall W, Lovegrove

JA, Karlstrom B, Ris�rus U, Roche HM. (2013) 'Obesity and Body Fat Classification

in the Metabolic Syndrome: Impact on Cardiometabolic Risk Metabotype'. Obesity, .

Camargo A, Rangel-Z��iga OA, Pe�a-Orihuela P, Mar�n C, P�rez-Mart�nez P,

Delgado-Lista J, Gutierrez-Mariscal FM, Malag�n MM, Roche HM, Tinahones FJ,

Lopez-Miranda J. (2013) 'Postprandial changes in the proteome are modulated by

dietary fat in patients with metabolic syndrome'. Journal of Nutritional Biochemistry, 24

:318-324.

Morris C, Gibney M, Roche H, Ryan M, Grada O, De Vito G, Gibney E, Brennan L

(2013) 'The relationship between aerobic fitness level and metabolic profiles in healthy



adults'. Molecular Nutrition and Food Research .

Perez-Martinez P, Garcia-Rios A, Delgado-Lista J, Gjelstad IM, Gibney J, Kieć-Wilk B,

Camargo A, Helal O, Karlstr�m B, Blaak EE, Hall W, Ris�rus U, Dembińska-Kieć A,

Defoort C, Saris WH, Lovegrove JA, Drevon CA, Roche HM, Lopez-Miranda J. (2013)

'Gene-nutrient interactions on the phosphoenolpyruvate carboxykinase influence insulin

sensitivity in metabolic syndrome subjects'. Clinical Nutrition, Aug;32(4):630-5 :630-

635.

Camargo A, Meneses ME, Perez-Martinez P, Delgado-Lista J, Jimenez-Gomez Y, Cruz-

Teno C, Tinahones FJ, Paniagua JA, Perez-Jimenez F, Roche HM, Malagon MM,

Lopez-Miranda J (2013) 'Dietary fat differentially influences the lipids storage on the

adipose tissue in metabolic syndrome patients'. The Journal of nutrition .

Morris C, O'Grada C, Ryan M, Roche HM, Gibney MJ, Gibney ER, Brennan L (2013)

'Identification of differential responses to an oral glucose tolerance test in healthy

adults'. PLoS ONE, 8 (8).

McAllan L, Keane D, Schellekens H, Roche HM, Korpela R, Cryan JF, Nilaweera KN.

(2013) 'Whey protein isolate counteracts the effects of a high-fat diet on energy intake

and hypothalamic and adipose tissue expression of energy balance-related genes'. British

Journal of Nutrition, 4 :1-13.

Yubero-Serrano EM, Delgado-Lista J, Peña-Orihuela P, Perez-Martinez P, Fuentes F,

Marin C, Tunez I, Tinahones FJ, Perez-Jimenez F, Roche HM, Lopez-Miranda J (2013)

'Oxidative stress is associated with the number of components of metabolic syndrome:

LIPGENE study'. Experimental & molecular medicine, 45 .

Morine MJ, Toomey S, McGillicuddy FC, Reynolds CM, Power KA, Browne JA,

Loscher C, Mills KH, Roche HM. (2013) 'Network analysis of adipose tissue gene

expression highlights altered metabolic and regulatory transcriptomic activity in high-

fat-diet-fed IL-1RI knockout mice'. Journal of Nutritional Biochemistry, 24 :788-799.

Phelan, N,O'Connor, A,Tun, TK,Correia, N,Boran, G,Roche, HM,Gibney, J (2013)

'Leucocytosis in women with polycystic ovary syndrome (PCOS) is incompletely

explained by obesity and insulin resistance'. Clinical Endocrinology, 78 :107-113.

Ryan, MF,Grada, CO,Morris, C,Segurado, R,Walsh, MC,Gibney, ER,Brennan,

L,Roche, HM,Gibney, MJ (2013) 'Within-person variation in the postprandial lipemic

response of healthy adults'. American Journal of Clinical Nutrition, 97 :261-267.

Reynolds, CM,Toomey, S,McBride, R,McMonagle, J,Morine, MJ,Belton, O,Moloney,

AP,Roche, HM (2013) 'Divergent effects of a CLA-enriched beef diet on metabolic

health in ApoE(-/-) and ob/ob mice'. J Nutr Biochem, 24 :401-411.

McArdle MA, Finucane OM, Connaughton RM, McMorrow AM, Roche HM (2013)

'Mechanisms of obesity-induced inflammation and insulin resistance: insights into the

emerging role of nutritional strategies'. Frontiers in endocrinology, 4 .

Finucane OM, Reynolds CM, McGillicuddy FC, Roche HM (2012) 'Insights into the

role of macrophage migration inhibitory factor in obesity and insulin resistance'. The

Proceedings of the Nutrition Society, 71 (4):622-633.

Borgeson, E., McGillicuddy, F. C., Harford, K. A., Corrigan, N., Higgins, D. F.,

Maderna, P., Roche, H. M., Godson, C. (2012) 'Lipoxin A4 attenuates adipose

inflammation'. FASEB J, 26 (10):4287-94.

Allott EH, Oliver E, Lysaght J, Gray SG, Reynolds JV, Roche HM, Pidgeon GP (2012)

'The SGBS cell strain as a model for the in vitro study of obesity and cancer'. Clinical &

translational oncology : official publication of the Federation of Spanish Oncology


Societies and of the National Cancer Institute of Mexico, 14 (10):774-782.

Oliver E, McGillicuddy FC, Harford KA, Reynolds CM, Phillips CM, Ferguson JF,

Roche HM (2012) 'Docosahexaenoic acid attenuates macrophage-induced inflammation

and improves insulin sensitivity in adipocytes-specific differential effects between LC n-

3 PUFA'. The Journal of nutrition, 23 (9):1192-1200.

Dr Noreen Sheehy

McCabe A, Hashimoto K, Hall WW, Sheehy N. (2013) 'The Four and a Half LIM

family are novel interactants of the HTLV-1 oncoprotein Tax1'. Journal of Virology, 87

(13).

Marban,C;Bukong,TN;Hall,WW; Sheehy,N (2012) 'Interplay between the HTLV-2 Tax

and APH-2 proteins in the regulation of the AP-1 pathway'. Retrovirology, 9:98. doi:

10.1186/1742-4690-9-98 .

Professor Denis Shields

O'Brien, K. T., Haslam, N. J., Shields, D. C. (2013) 'SLiMScape: a protein short linear

motif analysis plugin for Cytoscape'. BMC Bioinformatics, 14 .

Pushker, R., Mooney, C., Davey, N. E., Jacque, J. M., Shields, D. C. (2013) 'Marked

variability in the extent of protein disorder within and between viral families'. PLoS

One, 8 (4).

Khan, W., Duffy, F., Pollastri, G., Shields, D. C., Mooney, C. (2013) 'Predicting binding

within disordered protein regions to structurally characterised peptide-binding domains'.

PLoS One, 8 (9).

Mooney, C., Cessieux, A., Shields, D. C., Pollastri, G. (2013) 'SCL-Epred: a generalised

de novo eukaryotic protein subcellular localisation predictor'. Amino Acids, 45 (2):291-

9.

O'Brien, R. P., Phelan, P. J., Conroy, J., O'Kelly, P., Green, A., Keogan, M., O'Neill, D.,

Jennings, S., Traynor, C., Casey, J., McCormack, M., Conroy, R., Chubb, A., Ennis, S.,

Shields, D. C., Cavalleri, G. L., Conlon, P. J. (2013) 'A genome-wide association study

of recipient genotype and medium-term kidney allograft function'. Clin Transplant, 27

(3):379-87.

den Hoed, M., Eijgelsheim, M., Esko, T., Brundel, B. J., Peal, D. S., Evans, D. M.,

Nolte, I. M., Segre, A. V., Holm, H., Handsaker, R. E., Westra, H. J., Johnson, T.,

Isaacs, A., Yang, J., Lundby, A., Zhao, J. H., Kim, Y. J., Go, M. J., Almgren, P.,

Bochud, M., Boucher, G., Cornelis, M. C., Gudbjartsson, D., Hadley, D., van der Harst,

P., Hayward, C., den Heijer, M., Igl, W., Jackson, A. U., Kutalik, Z., Luan, J., Kemp, J.

P., Kristiansson, K., Ladenvall, C., Lorentzon, M., Montasser, M. E., Njajou, O. T.,

O'Reilly, P. F., Padmanabhan, S., St Pourcain, B., Rankinen, T., Salo, P., Tanaka, T.,

Timpson, N. J., Vitart, V., Waite, L., Wheeler, W., Zhang, W., Draisma, H. H., Feitosa,

M. F., Kerr, K. F., Lind, P. A., Mihailov, E., Onland-Moret, N. C., Song, C., Weedon,

M. N., Xie, W., Yengo, L. (2013) 'Identification of heart rate-associated loci and their

effects on cardiac conduction and rhythm disorders'. Nat Genet, 45 (6):621-31.

Mooney, C., Haslam, N. J., Holton, T. A., Pollastri, G., Shields, D. C. (2013)

'PeptideLocator: prediction of bioactive peptides in protein sequences'. Bioinformatics,

29 (9):1120-6.

Vijayakumar, V., Guerrero, A. N., Davey, N., Lebrilla, C. B., Shields, D. C., Khaldi, N.

(2012) 'EnzymePredictor: a tool for predicting and visualizing enzymatic cleavages of

digested proteins'. J Proteome Res, 11 (12):6056-65.











Davey, N. E., Cowan, J. L., Shields, D. C., Gibson, T. J., Coldwell, M. J., Edwards, R. J.

(2012) 'SLiMPrints: conservation-based discovery of functional motif fingerprints in

intrinsically disordered protein regions'. Nucleic Acids Research, 40 (21):10628-41.

Sudol, M., Shields, D. C., Farooq, A. (2012) 'Structures of YAP protein domains reveal

promising targets for development of new cancer drugs'. Seminars in Cell and

Developmental Biology, 23 (7):827-33.

Haslam, N. J., Shields, D. C. (2012) 'Peptide-binding domains: are limp handshakes

safest?'. Sci Signal, 5 (243).

Professor Jeremy Simpson

Bexiga MG, Kelly C, Dawson KA, Simpson JC (2013) 'RNA interference-mediated

inhibition of apoptosis fails to prevent cationic nanoparticle-induced cell death in

cultured cells'. Nanomedicine, in press .

Stadler C, Rexhepaj E, Singan, VR, Murphy RF, Pepperkok R, Uhlen M, Simpson JC,

Lundberg E (2013) 'Immunofluorescence and fluorescent-protein tagging show high

correlation for protein localization in mammalian cells'. Nature Methods, 10 :315-323.

Miranda-CasoLuengo AA, Miranda-CasoLuengo R, Lieggi NT, Luo H, Simpson JC,

Meijer WG (2013) 'A real-time impedance based method to assess Rhodococcus equi

virulence'. PLoS ONE, 8 (3).

McCarthy JM, Franke M, Resenberger UK, Waldron S, Simpson JC, Tatzelt J,

Appelhans D, Rogers MS (2013) 'Anti-prion drug mPPIg5 inhibits PrPC conversion to

PrPSc'. PLoS ONE, 8 (1).

Singan VR, Handzic K, Simpson JC (2012) 'Quantitative image analysis approaches for

probing Rab GTPase localization and function in mammalian cells'. Biochemical Society

Transactions, 40 (6):1389-1393.

Yi P, Higa A, Taouji S, Bexiga MG, Marza E, Arma D, Castain C, Le Bail B, Simpson

JC, Rosenbaum J, Balabaud C, Bioulac-Sage P, Blanc JF, Chevet E (2012) 'Sorafenib-

Mediated Targeting of the AAA+ ATPase p97/VCP Leads to Disruption of the

Secretory Pathway, Endoplasmic Reticulum Stress, and Hepatocellular Cancer Cell

Death'. Molecular Cancer Therapeutics, 11 :2610-2620.

Roth SD, Sch�ttrumpf J, Milanov P, Abriss D, Ungerer C, Quade-Lyssy P, Simpson

JC, Pepperkok R, Seifried E, Tonn T. (2012) 'Chemical Chaperones Improve Protein

Secretion and Rescue Mutant Factor VIII in Mice with Hemophilia A'. PLoS ONE, 7 (9).

Varela JA, Bexiga MG, Aberg C, Simpson JC, Dawson KA (2012) 'Quantifying size-

dependent interactions between fluorescently labeled polystyrene nanoparticles and

mammalian cells'. Journal Of Nanobiotechnology, 10 (1):39.1-39.6.

Dr Albert Smolenski

Tilley DO, Arman M, Smolenski A, Cox D, O'Donnell JS, Douglas CW, Watson SP,

Kerrigan SW (2013) 'Glycoprotein Iba and FcgRIIa play key roles in platelet activation

by the colonizing bacterium, Streptococcus oralis'. Journal of Thrombosis and

Haemostasis, 11 (5):941-950.

Hampson A, O'Connor A, Smolenski A (2013) 'Synaptotagmin-like protein 4 and rab8

interact and increase dense granule release in platelets'. Journal of Thrombosis and

Haemostasis, 11 :161-168.

Dr Matthias Tacke







Walther, W; Fichtner, I; Deally, A; Hogan, M; Tacke, M (2013) 'The Activity of

Titanocene T Against Xenografted CAKI-1 Tumors'. Letters in Drug Design &

Discovery, 10 (5):375-381.

Schur, J; Manna, CM; Deally, A; K�ster, R; Tacke, M; Tshuva, EY; Ott, I (2013) 'A

Comparative Chemical-Biological Evaluation of Titanium(IV) Complexes with Salan or

Cyclopentadienyl Ligands'. Journal of the Chemical Society-Chemical Communications,

49 :4785-4787.

F. Hackenberg, G. Lally, H. M�ller-Bunz, F. Paradisi, D. Quaglia, W. Streciwilk, M.

Tacke (2013) 'Synthesis and biological evaluation of N-heterocyclic carbene-silver(I)

acetate complexes derived from 4,5-ditolyl-imidazole'. Inorganica Chimica Acta, 395

:135-144.

M. A. Sharkey, J. P. O'Gara, S. V. Gordon, F. Hackenberg, C. Healy, F. Paradisi, S.

Patil, B. Schaible, M. Tacke (2012) 'Investigations into the Antibacterial Activity of the

Silver-Based Antibotic Drug Candidate SBC3'. Antibiotics, 1 :25-28.

F. Hackenberg, G. Lally, H. M�ller-Bunz, F. Paradisi, D. Quaglia, W. Streciwilk, M.

Tacke (2012) 'Novel symmetrically p-benzyl-substituted 4,5-diaryl-imidazole N-

heterocyclic carbene-silver(I) acetate complexes, synthesis and biological evaluation'.

Journal of Organometallic Chemistry, 717 :123-134.

I. Fichtner, D. Behrens, J. Cinatl jr., M. Michaelis, L. C. Sanders, R. Hilger, B. N.

Kennedy, A. L. Reynolds, F. Hackenberg, G. Lally, Susan Quinn, I. McRae, M. Tacke

(2012) 'In Vitro and In Vivo Investigations into the Carbene Silver Acetate Anticancer

Drug Candidate SBC1'. Letters in Drug Design & Discovery, 9 (9):815-822.

A. Deally, F. Hackenberg, G. Lally, H. M�ller-Bunz, M. Tacke; (2012) 'Synthesis and

preliminary cytotoxicity studies of achiral silyl-substituted titanocene dichloride

derivatives'. Organometallics, 31 (16):5782-5790.

U. Olszewski, A. Deally, M. Tacke, G. Hamilton (2012) 'Alterations of Phosphoproteins

in NCI-H526 Small Cell Lung Cancer Cells involved in Cytotoxicity of Cisplatin and

Titanocene Y'. Neoplasia, 14 (9):813-822.

Professor Cormac Taylor

Nguyen LK, Cavadas MA, Scholz CC, Fitzpatrick SF, Bruning U, Cummins EP,

Tambuwala MM, Manresa MC, Kholodenko BN, Taylor CT, Cheong A (2013) 'A

dynamic model of the hypoxia-inducible factor 1-alpha (HIF-1a) network'. Journal of

Cell Science .

Lenihan, CR,Taylor, CT (2013) 'The impact of hypoxia on cell death pathways'.

Biochemical Society Transactions, 41 :657-663.

Cummins, EP,Doherty, GA,Taylor, CT (2013) 'Hydroxylases as therapeutic targets in

inflammatory bowel disease'. LAB INVEST, 93 :378-383.

Schaible, B,McClean, S,Selfridge, A,Broquet, A,Asehnoune, K,Taylor, CT,Schaffer, K

(2013) 'Hypoxia Modulates Infection of Epithelial Cells by Pseudomonas aeruginosa'.

PLoS ONE, 8 .

Tannahill, GM,Curtis, AM,Adamik, J,Palsson-McDermott, EM,McGettrick, AF,Goel,

G,Frezza, C,Bernard, NJ,Kelly, B,Foley, NH,Zheng, L,Gardet, A,Tong, Z,Jany,

SS,Corr, SC,Haneklaus, M,Caffrey, BE,Pierce, K,Walmsley, S,Beasley, FC,Cummins,

E,Nizet, V,Whyte, M,Taylor, CT,Lin, H,Masters, SL,Gottlieb, E,Kelly, VP,Clish,

C,Auron, PE,Xavier, RJ,O'Neill, LAJ (2013) 'Succinate is an inflammatory signal that

induces IL-1 beta through HIF-1 alpha'. Nature, 496 .


http://www.benthamscience.com/contents.php?in=109001&m=June&y=2013

http://pubs.rsc.org/en/content/articlelanding/2013/cc/c3cc38604j

http://dx.doi.org/10.1016/j.ica.2012.10.029

http://www.mdpi.com/journal/antibiotics

http://dx.doi.org/10.1016/j.jorganchem.2012.07.006

http://www.benthamscience.com/contents-JCode-LDDD-Vol-00000009-Iss-00000009.htm

http://pubs.acs.org/doi/10.1021/om300227h

http://www.neoplasia.com/pdf/manuscript/v14i09/neo12962.pdf

Professor Emma C Teeling

Hughes G.M., Gang L., Murphy W.J., Higgins D.G., Teeling E.C. (2013) 'Using

Illumina Next Generation Sequencing Technologies to Sequence Multigene Families in

de novo Species'. Molecular Ecology Resources, 13 (3):510-512.

J. Kirwan, M. Bekaert, J. M. Commins, K. T. J. Davies, S. J. Rossiter, E. C. Teeling

(2013) 'A Phylomedicine Approach to Understanding the Evolution of Auditory Sensory

Perception and Disease in Mammals'. Evolutionary Applications, 6 (3):412-422.

Lundy M.G., Harrison A., Buckley D.J., Boston E.S., Scott D.D., Teeling

E.C.,Montgomery W.I., Houghton J.D.R. (2013) 'Prey field switching based on

preferential behaviour can induce Levy flights'. Journal of the Royal Society, Interface /

the Royal Society, 10 (78).

S. J. Puechmaille & E. C. Teeling (2013) 'Non-invasive genetics can help find rare

species: a case study with Rhinolophus mehelyi (Rhinolophidae: Chiroptera)'.

Mammalia .

G. Jones, E. C. Teeling, S. J. Rossiter (2013) 'From the ultrasonic to the infrared:

molecular evolution and the sensory biology of bats'. Frontiers in Integrative

Physiology, 4 .

S. E. Dool, S. J. Puechmaille, C. Dietz, J. Juste, C. Ib��ez, P. Hulva, S. G. Rou�, E.

J. Petit, G. Jones, S. J. Rossiter, E. C. Teeling (2013) 'Phylogeography and postglacial

recolonisation of Europe by Rhinolophus hipposideros: evidence from multiple genetic

markers'. Molecular Ecology, 22 (15):4055-4070.

D. D. Scott, S. Fitzpatrick, D. A. Bailie, E. S. M. Boston, M. G. Lundy, D. J. Buckley,

E. C. Teeling, W. I. Montgomery, P. A. Prod�hl (2013) 'Isolation and characterization

of eight polymorphic microsatellite loci for Natterer's bat, Myotis nattereri

(Vespertilionidae, Chiroptera)'. Conservation Genetics Resources, 5 :643-645.

Springer, M.S, Meredith, R.B., Teeling, E.C., Murphy, W.J. (2013) 'Technical Comment

on The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals'. Science,

9 :613-603.

E.C. Teeling, S.B. Hedges (2013) 'Making the impossible possible: rooting the tree of

placental mammals'. Molecular Biology and Evolution, 30 (9):1999-2000.

Lundy, M.G.,Harrison, A., Buckley, D.J., Boston, E.S., Scott, D.D., Teeling, E.C.,

Montgomery, W.I., Houghton, J.D.R. (2012) 'Prey field switching based on preferential

behaviour can induce Levy flights'. Proceedings of the Royal Society B - Biological

Sciences .

Goodman, S.M., Puechmaille, S., Friedli-Weyeneth, N., Gerlach, J., Ruedi, M.,

Schoeman, C., Stanley, W.T. and Teeling, E.C. (2012) 'Phylogeny of the Emballonurini

bats (Family Emballonuridae): new genus of Emballonura and species of Coleura'.

Journal of Mammalogy, 93 (6):1440-1455.

D. J. Buckley, M. G. Lundy, E. S. M. Boston, D. D. Scott, Y. Gager, P. Prodohl, F.

Marnell, W. I. Montgomery, E. C. Teeling (2012) 'The spatial ecology of the whiskered

bat (Myotis mystacinus) at the western extreme of its range provides evidence of

regional adaptation'. Mammalian Biology, 78 (3):198-204.

Dr Douglas Veale

Collins, E.S., Galligan, M.C., Saldova, R., Adamczyk, B., Abrahams, J.L., Campbell,

M.P., Ng, C.T., Veale, D.J., Murphy, T.B., Rudd, P.M., FitzGerald, O. (2013)



'Glycosylation Status of Serum in Inflammatory Arthritis in Response to Anti-TNF

Treatment'. Rheumatology, 52 (9):1572-1582.

Professor Matthias Wilm

Hannes Hahne, Fiona Pachl, Benjamin Ruprecht,Stefan K Maier, Susan Klaeger,

Dominic Helm, Guillaume M�dard , Matthias Wilm , Simone Lemeer, Bernhard Kuster

(2013) 'DMSO enhances electrospray response, boosting sensitivity of proteomic

experiments'. Nature Methods, 10 (10):989-991.

Dr Xiangming Zhu

Raymond Smith, Xiaojun Zeng, Helge Muller-Bunz, Xiangming Zhu (2013) 'Synthesis

of glycosyl disulfides containing an α-glycosidic linkage'. Tetrahedron Letters, 54

:5348-5350.

X. Zeng, R. Smith, X. Zhu (2013) 'Synthesis of thioglycoside analogues of maradolipid'.

Journal of Organic Chemistry, 78 :4165-4170.

N. Murphy, A. Petrasca, N. M. Murphy, V. O'Reilly, P. Evans, D. G. Doherty, X. Zhu

(2013) 'Synthesis and immunostimulatory activity of two α-S-galactosyl phenyl-capped

ceramides'. Arkivoc, 2013 :363-377.

Back to Top

Other Journals


Al-Rubeai M. and Kuystermans D. (2013) 'Valuing the future: Recent advances and

future directions in cell line development' Pharmaceutical Bioprocessing, 1 (3):243-247.

Professor Andrew Green

J. M. Darlow, M. G. Dobson, R. Darlay, C. M. Molony, M. Hunziker, A. J. Green, H. J.

Cordell, P. Puri & D. E. Barton (2013) 'A new genome scan for primary nonsyndromic

vesicoureteric reflux emphasizes high genetic' Molecular Genetics and Genomic

Medicine .

O'Brien RP, Phelan PJ, Conroy J, O'Kelly P, Green A, Keogan M, O'Neill D, Jennings

S, Traynor C, Casey J, McCormack M, Conroy R, Chubb A, Ennis S, Shields DC,

Cavalleri GL, Conlon PJ (2013) 'A genome-wide association study of recipient genotype

and medium-term kidney allograft function' clinical transplantation .

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Conference Publications


Al-Majmaie R., Alattar N., Kennedy E., Al-Rubeai M., Rice J., Zerulla D. (2013)

Raman spectroscopy for intracellular localisation of meso-tetraphenylporphyrin-gold

nanoparticles conjugates SPIE 8815, Nanoimaging and Nanospectroscopy,

Dr John Crean

Kavanagh, D., Gaffney A., Murphy, M., Faherty, N., Andrews, D., Higgins, D., McKay,

G., Maxwell, P., Godson, C. and Crean, J. (2012) Wnt 6 is increased in diabetic

nephropathy and modulates de novo tubulogenesis and opposes TGFbeta mediated

epithelial cell differentiation in vitro American Society of Nephrology,







http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=23975139&retmode=ref&cmd=prlinks

Dr Giuliano Elia

Gegenbauer, K; Elia,G; Blanco-Fernandez, A; Smolenski, A (2012) RGS18 integrates

activatory and inhibitory signalling in platelets First European Platelet Network

Conference,


Kavanagh, D., Gaffney A., Murphy, M., Faherty, N., Andrews, D., Higgins, D., McKay,

G., Maxwell, P., Godson, C. and Crean, J. (2012) Wnt 6 is increased in diabetic

nephropathy and modulates de novo tubulogenesis and opposes TGFbeta mediated

epithelial cell differentiation in vitro American Society of Nephrology,

Dr Amanda McCann

Ivers, L; Cummings, BK; McCann, A; Itasaki, N (2013) The effect of microenvironment

on breast cancer cells cultured in 3D matrix Irish Association for Cancer Research

Annual Meeting,

Professor Wim Meijer

Garcia, M.S., Carvalho, D., Zlydareva, O., Muldoon, C., Masterson, B.F., O'Grady,

M.F., Meijer, W.G., O'Sullivan, J.J., O'Hare, G,M.P. (2012) An Agent-Based Wireless

Sensor Network for Water Quality Data Collection . In: J. Bravo, D. Lopez-de-Ipina, F.

Moya eds. 6th International Conference Ubiquitous Computing and Ambient

Intelligence (UCAmI), Vitoria-Gasteiz, Spain, 454 - 461

Sanchez, M.; O'Hare, G.M.P.; O'Grady, M.J.; Carvalho, D.; Zlydareva, O.; Muldoon, C.;

Meijer, W.; O'Sullivan, J.; O'Keefe, B. (2012) An Agent-based Wireless Sensor

Network for Water Quality Data Collection 6th International Conference on Ubiquitous

Computing & Ambient Intelligence (UCAmI 2012), Vitoria-Gasteiz, Spain, 454 - 461

Bedri,Z., O'Sullivan, J.J., Corkery, A., Deering, L., Demeter, K., Meijer, W. G., O'Hare,

G. and Masterson, B. (2012) Real-time Prediction System of Bathing Water Quality at

Bray, Co. Wicklow, Ireland New Developments in IT & Water, Amsterdam,

Dr Keith Murphy

Murphy RP, Keogh EA, O'Shea SD, Bowen G, Pickering M, Murphy KJ (2013) The

nootropic agent nefiracetam is a potential remyelinating therapeutic in vivo XI European

Meeting on Glial Cells in Health and Disease, S134

O'Shea SD, Keogh EA, Murphy RP, Bowen G, Pickering M, Murphy KJ (2013)

Exploring the mechanism of action of the novel remyelinating therapeutic nefiracetam

XI European Meeting on Glial Cells in Health and Disease, S135

Sheridan GK, Pickering M, Watters O, Halley PG, O'Sullivan NC, Mooney C, O'Connor

JJ, Murphy KJ (2012) CX3CL1 is up-regulated in the rat hippocampus during memory-

associated synaptic plasticity Society for Neuroscience Annual Meeting 2012,

Wdowicz A, Gleize JJ, Bowen G, Murphy KJ, O'Connell DJ (2012) The calcium

binding protein secretagogin is expressed in discrete cell populations in the adult rat

brain and exhibits age-associated regulation Society for Neuroscience Annual Meeting

2012,

Dr Jarlath Nally

O'Donovan J., Gutierrez J., Williams E., Proctor A., Worrall S., Marques P., Brady C.,

McElroy M., Maley S., Nally J., Buxton D., Sammin D., Bassett H. and Markey B.







(2013) Comparative aspects of placental pathology and immunopathology in ewes

challenged with Chlamydophila abortus or Toxoplasma gondii Second European

Meeting on Animal Chlamydioses and Zoonotic Implications, Jena, Germany,

Dr John O'Connor

A. Wall, A.E. Corcoran, K. O'Halloran, J.J. O' Connor (2013) Effects of chronic

intermittent hypoxia and prolyl-hydroxylase inibition on synaptic transmission and

plasticity in the rat ca1 and dentate gyrus Section of Biomedical Sciences, RAMI, UCC,

Cork,

H. Nolan, A.E. Corcoran, J.J. O'Connor (2013) The effects of hypoxia-mimetic drugs on

synaptic transmission and synaptic plasticity in the dentate gyrus in vitro Section of

Biomedical Sciences, RAMI, UCC, Cork,

C. Leyden, R.A. Fanning, D.P. Campion, J.J. OConnor (2013) A novel role for

adrenergic and serotonergic signaling in the action of ergometrine in isolated term

human myometrium Section of Biomedical Sciences, RAMI, UCC, Cork,

Alan E. Corcoran, John J. OConnor (2013) Acute hypoxic pre-conditioning and prolyl-

hydroxylase inibition improves synaptic transmission recovery time from a subsequent

hypoxic insult in the rat hippocampus Section of Biomedical Sciences, RAMI, UCC,

Cork,

Luke M. Alvey, John J. OConnor (2013) Novel interactions of succinate,

lipopolysaccharide and hypoxia on synaptic transmission in the rat hippocampus in vitro

Section of Biomedical Sciences, RAMI, UCC, Cork,

Dr Albert Smolenski

Gegenbauer, K; Elia,G; Blanco-Fernandez, A; Smolenski, A (2012) RGS18 integrates

activatory and inhibitory signalling in platelets First European Platelet Network

Conference,

Hampson, A; Smolenski, A (2012) Synaptotagmin-like protein 4 regulates platelet

granule secretion First European Platelet Network Conference,

Back to Top

Published Reports


Al-Rubeai (2013) Quality Assurance of Iraqi Engineering Colleges. UNESCO, Amman. Back to Top

Other Publications

Professor Alan Baird

Rogers, AC,Collins, D,Mohan, HM,Baird, AW,Winter, DC (2013) Bacterial-produced

polyamines interfere with the colonic mucus barrier. Abstract.

Rogers, AC,Collins, D,Quinn, N,Mohan, HM,Baird, AW,Winter, DC (2013) Bacterial-

produced polyamines allow bacterial colonisation of the colonic mucus barrier.

Abstract.

Dr Lorraine Brennan

Lindsay, KL,Walsh, CA,Brennan, L,McAuliffe, FM (2013) Probiotics in pregnancy and

maternal outcomes: a systematic review. Reviews.






Professor Sean Callanan

Callanan JJ (2012) Pathology, a path well worn. Editorial.


Murphy, M,Hickey, F,Godson, C (2013) IHG-1 amplifies TGF-beta 1 signalling and

mitochondrial biogenesis and is increased in diabetic kidney disease. Reviews.

Dr Breand�n Kennedy

Moriarity, AR,Murphy, A,Cathcart, M,Kennedy, BN,Murphy, P,McCormick,

PH,O'Sullivan, JN,Mehigan, BJ (2013) Assessing novel small molecule drugs as

potential new therapeutic options to treat colorectal cancer. Abstract.

Professor Carel Le Roux

Neff, KJ,le Roux, CW (2013) Incretins: new targets for the prevention of diabetes and

obesity. Reviews.

Neff, KJ,Olbers, T,le Roux, CW (2013) Bariatric surgery: the challenges with

candidate selection, individualizing treatment and clinical outcomes. Reviews.

Neff, KJ,Prenner, C,Chuah, LL,Godsland, I,le Roux, CW (2013) Bariatric Surgery: A

Holistic Assessment of Outcomes. Abstract.

Professor Patrick Lonergan

Maillo, V,Duffy, P,O'Hara, L,de Frutos, C,Kelly, AK,Lonergan, P,Rizos, D (2013)

EFFECT OF HUMAN CHORIONIC GONADOTROPIN (HCG) ADMINISTRATION

ON DAYS 1, 2, 3, OR 4 POST-OESTRUS ON CORPUS LUTEUM DEVELOPMENT

AND CIRCULATING PROGESTERONE CONCENTRATIONS IN BEEF HEIFERS.

Abstract.

O'Hara, L,Forde, N,Rizos, D,Maillo, V,Ealy, AD,Kelly, AK,Rodriguez, P,Evans,

ACO,Lonergan, P (2013) EFFECT OF SHORT TERM PROGESTERONE

SUPPLEMENTATION ON CIRCULATING PROGESTERONE CONCENTRATION,

CORPUS LUTEUM SIZE, AND EARLY EMBRYO DEVELOPMENT IN CATTLE.

Abstract.

Al Naib, A,Mamo, S,Lonergan, P (2013) INVESTIGATION OF A PREFERENTIALLY

UPREGULATED GENE CLUSTER IN DAY 7 BOVINE EMBRYOS DERIVED FROM

RNA SEQUENCING DATA. Abstract.

Dr Amanda McCann

McEvoy, L,O'Toole, S,Spillane, C,Stordal, B,Gallagher, M,Martin, C,Norris, L,Gleeson,

N,McGoldrick, A,Furlong, F,McCann, A,Sheils, O,O'Leary, J (2013) Novel Hypoxia-

Associated Markers of Chemoresistance in Ovarian Cancer. Abstract.


Evers, J,Carrington, EV,Scott, SM,Knowles, CH,O'Connell, PR,Jones, JFX (2013)

Comparison of anal evoked potentials elicited by mechanical and electrical stimuli in

anaesthesised rats. Abstract.

O'Connell, PR (2013) Sacral nerve stimulation for constipation (Br J Surg2013; 100:

174-181). Editorial.










Duggan, E,Finucane, C,Cronin, H,O'Regan, C,Savva, G,Loughman, J,Kenny, RA (2013)

VISION, FALLS AND FEAR OF FALLING IN AN OLDER IRISH POPULATION:

FINDINGS FROM THE IRISH LONGITUDINAL STUDY ON AGEING (TILDA).

Abstract.

Professor Helen Roche

McAllan, L,Cotter, PD,Roche, HM,Korpela, R,Nilaweera, KN (2013) Impact of leucine

on energy balance. Reviews.

Professor Cormac Taylor

Scholz, CC,Taylor, CT (2013) Hydroxylase-dependent regulation of the NF-kappa B

pathway. Reviews.

Professor Bill Watson

Flynn, L,Sheils, O,O'Leary, JJ,Finn, SP,Watson, W,Loda, M,Mucci, L (2013) miRNA

Signatures of Indolent and Aggressive Prostate Cancer. Abstract.

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ucd conway publications 2012-2013 (extract from president's report)

Documents