The California Institute for Telecommunications and Information

Technology

Briefing to the

Staff of the San Diego Supercomputer Center

UCSD

La Jolla, CA

April 18, 2001

Governor Davis Created New Institutes for Science, Innovation, and Tech Transfer

UCSBUCLA

The California NanoSystems Institute

UCSFUCB

The California Institute for Bioengineering, Biotechnology,

and Quantitative Biomedical Research

UCI

UCSD

The California Institute for Telecommunications

and Information Technology

The Center for Information Technology Research

in the Interest of Society(Proposed-UCB, UCD, UCSC, UCM)

UCSC

The Institute is Built on Existing UCSD/UCI Faculty Strengths

Broadband Wireless

LOW-POWEREDCIRCUITRY

ANTENNAS AND PROPAGATION

COMMUNICATIONTHEORY

COMMUNICATIONNETWORKS

MULTIMEDIAAPPLICATIONS

RFMixed A/D

ASICMaterials

Smart AntennasAdaptive Arrays

ModulationChannel CodingMultiple Access

Compression

ArchitectureMedia Access

SchedulingEnd-to-End QoS

Hand-Off

ChangingEnvironment

ProtocolsMulti-Resolution

Center for Wireless Communications

Source: UCSD CWC

San Diego Supercomputer Center Cal(IT)2 Research & Infrastructure Partner

• Areas of Strength & Leadership for Initial Interactions between Cal(IT)2 and

Phil Papadopoulos, Frank Dwyer, Ronn Ritke, kc claffy, Hans-Werner Braun

Networking and Wireless

Peter Arzberger, Anke Kamrath, Phil Papadopoulos, Chaitan Baru, Alison Withey

Management

John Wooley, Phil Bourne, Shankar Subramaniam, Mark Ellisman, Mike Gribskov, Kim Baldridge

Bioinformatics/Digitally Enabled Med./ Comp. Chemistry/Biology

Ann Redelfs, Kim Baldridge, Theresa BoisseauEducation/Outreach

Tom PerrineComputer Security Infrastructure

Mike Vildibill, Frank Dwyer, Phil Andrews, Phil P.Core IT Infrastructure and Integration

Jay Boisseau, Mary Thomas, Allan SnavelyComputing and Portals

Mike Bailey, John MorelandVisualization/GIS/Augmented Reality

Alison WitheyEnviroinformatics/Observing Systems

Chaitan Baru, Reagan Moore, Tony FountainData Mining/Metadata/AI

Phil PapadopoulosClusters

Complex Problems Require a New Research and Education Framework

www.calit2.net

220 UCSD & UCI FacultyWorking in Multidisciplinary Teams

With Students, Industry, and the Community

The State Provides $100 M For New Buildings and Equipment

The UCSD Cal-(IT)2 BuildingPreliminary Design

• SDSC Staff and Lab Space– SDSC/Calit2 Staff– Clusters, Wireless– Visualization Labs– Audiovisual Editing Facilities– Gallery Space

Occupancy 2004220,000 Gross SF

A Broad Partnership Response from the Private Sector

Akamai Boeing

BroadcomAMCC CAIMISCompaq

Conexant Copper Mountain

EmulexEnterprise Partners VC

EntropiaEricsson

Global PhotonIBM

IdeaEdge VenturesIntersil

Irvine SensorsLeap Wireless

Litton IndustriesMedExpert

Merck Microsoft

Mission VenturesNCR

Newport CorporationOrincon

Panoram Technologies Printronix

QUALCOMMQuantum

R.W. Johnson Pharmaceutical RISAIC

SciFrameSeagate Storage

Silicon Wave Sony

STMicroelectronicsSun Microsystems

TeraBurst Networks Texas InstrumentsUCSD Healthcare The Unwired Fund

WebEx

ComputersCommunications

SoftwareSensors

BiomedicalStartups

Venture Firms

Large Partners>$10M Over 4 Years

$140 M Match From Industry

The Perfect Storm: Convergence of Engineering with BioMed, Physics, & IT

5 nanometersHuman Rhinovirus

IBM Quantum CorralIron Atoms on Copper400x

Magnification

From MEMS to Nanotech

VCSELaser

500x Magnification 2 mm

Nanogen MicroArray

Near Term Goal:Build an International Lambda Grid

• Establish PACI High Performance Network– SDSC to NCSA LambdaNet for DTF

• Link to:– State Dark Fiber

– Metropolitan Optical Switched Networks

– Campus Optical Grids

– International Optical Research Networks

• NSF Fund Missing Dark Fiber Links For:– Scientific Applications

– Network Research

Bridging Internet Data Collection and Theoretical Scaling Analysis

• Network Graph Theory– Sparse– Clustered– Hierarchical– Power Laws

• Goal– IT First Principles– Quantitative Laws– Verify Against Reality– Use for Optimal Design

Source: kc claffy, CAIDA

Fan Chung Graham, UCSD

½ Mile

•Commodity Internet, Internet2•Link UCSD and UCI

• Campus Wireless

The UCSD “Living Grid Laboratory”—Fiber, Wireless, Compute, Data, Software

SIO

SDSC

CS

ChemMed

Eng. / Cal-(IT)2

Hosp

• High-speed optical core

Source: Phil Papadopoulos, SDSC

Broadband Wireless Internet is Here Today

• Create Wireless Internet “Watering Holes”– Ad Hoc IEEE 802.11 Domains

– Real Broadband--11 mbps Going to 54 mbps

– Home, Neighborhoods, Office– MobileStar--Admiral Clubs, Major Hotels, Restaurants, …– UCSD—Key Campus Buildings, Dorms, Coffee Shops…

• Upsides– Ease of Use– Unlicensed so Anyone can Be a Wireless ISP– Will Accelerate Innovation—”Living in the Future”

• Downsides– Not Secure– Shared Bandwidth– Short Range Coverage

“The future is already here, it’s just not evenly distributed”William Gibson, Author of Neuromancer

Web Interface to Grid ComputingThe NPACI GridPort Architecture

802.11b Wireless

Interactive Access to:• State of Computer• Job Status• Application Codes

The Wireless Internet will Transform Computational Science and Engineering

• Teraflop Supercomputers Simulate in Dynamic 3D• Evolving a System Requires Knowing the Initial State• Add Wireless Sensors and Embedded Processors

– Give Detailed State Information– Allows for Comparison of Simulation with Reality

• Critical Software Research Required – Security– Robust Scalable Middleware– Effervescent Architectures– Mobile Code– Resource Discovery– Ad Hoc Networking– SensorNet Simulations

The High PerformanceWireless Research and Education Network

• Cal-(IT)2 Will Build on This Pioneering Experiment

• Add New Science Sensor Arrays

• Instrument Civil Infrastructure

• Try Out New Wireless Technologies

• Data Analysis

• Outreach and Education

NSF FundedPI, Hans-Werner Braun, SDSC

Co-PI, Frank Vernon, SIO45mbps Duplex Backbone

The Wireless Internet Adds Bio-Chemical-Physical Sensors to the Grid

• From Experiments to Wireless Infrastructure

• Scripps Institution of Oceanography

• SDSC• Cal-(IT)2

• Building on Pioneering Work of Hans-Werner Braun & Frank Vernon

Source: John Orcutt, SIO

Can Use of These Technologies Help Us Avoid the Downsides of Prolonged Growth?

• Add Wireless Sensor Array

• Build GIS Data• Focus on:

– Pollution– Water Cycle– Earthquakes– Bridges– Traffic– Policy

• Work with the Community to Adapt to Growth

HuntingtonBeach

Mission Bay

San Diego Bay

UCSD

UCI

High Tech Coast

From Telephone Conference Calls to Access Grid International Video Meetings

Access Grid Lead-ArgonneNSF STARTAP Lead-UIC’s Elec. Vis. Lab

Creating a Virtual Global Research LabCal-(IT)2 Uses SDSC AG Node

High Resolution Data Analysis FacilityLinked by Optical Networks to PACI TeraGrid

Planned for Fall 2001 at SIOSupport from SDSC and SDSU

Linked to Clusters and AI Data Mining

Panoram Technologies, SGI, Sun, TeraBurst Networks,

Cox Communications, Global PhotonInstitute Industrial Partners

The Institute Will Expand Our CapabilitiesUsing NCSA/Alliance Developments

• Cluster in a Box Integrated with SDSC – Integrated with SDSC Rocks

• Computational Grid Software in a Box

• Access Grid Software In a Box

• Display Wall in a Box– PC Clusters

–NVIDIA Cards

– Scalable Tiled Displays

Source: Dan Reed, NCSA Alliance

Augmented Reality Requires Overlaying the Physical and Cyber Realities

Source: Virginia Tech/Univ. Illinois, MIT, Univ Washington, UCSD

Cal-(IT)2 Will Collaborate to Create Links Between Art, Technology, & Science

“UCSD ”

Wireless “Pad” Web Interface

The Institute Facilitates Faculty Teams to Compete for Large Federal Grants

Deep Web

Surface Web

Proposal-Form a National Scale Testbed for Federating Multi-scale Brain Databases

Using NIH High Field NMR Centers

Source: Mark Ellisman, UCSD

DukeUCLA

Cal Tech

StanfordU. Of MN

Harvard

NCRR Imaging and Computing Resources UCSD

Cal-(IT)2SDSC

Cellular Signaling Pathway Database, Analysis Tools and User Interface

Shankar Subramaniam, UCSD, Director, Data Coordination & Bioinformatics Lab,

Alliance for Cell Signaling

M o tifL ib r a r ie s

S equenceA n n o ta t io nI n te r a c t io n s

Q u e r y T o o ls A n a ly s is T o o ls

D a ta b a s e T e m p o r a r yS to r a g e

D a ta S tr u c tu r e

E d it in gT o o l

C o m p a r is o nT o o l

P a th w a yG U I

L e g a c yP a th w a y s

S ig n a lin gN e tw o r k s

D a ta S to r e B u lle t inB o a r d

A n n o ta t io n sS y s te m

O th e rA n a ly s is

T o o ls

S ig n a lin gP a th w a y s

O r g a n is m

E x p r e s s io nP r o f ile s

P r o te o m ic sP r o f ile s

I n te r a c t io nP r o f ile s

C e ll & T is s u eS p e c if ic it y

M o le c u la rD is e a s e s

G e n e s(P r o te in s )

I n te r a c t io nM o d u le s

Alliance for Cell SignalingPI: Alfred Gilman, UT-SW MEDUCSF, Caltech, Stanford, UCSD

NIH and Industrial Funding

Monte Carlo Cellular Microphysiology From IBM Blue Horizon to the Grid

• PROJECT LEADERS– Francine D. Berman

– UC San Diego– Terrence J. Sejnowski

– Salk Institute for Biological Studies

• PARTICIPANTS– Dorian Arnold

Jack DongarraRichard Wolski

– University of Tennessee

– Thomas M. BartolLin-Wei Wu

– Salk Institute for Biological Studies

– Henri CasanovaMark H. EllismanMaryann Martone

– UC San Diego

Neurotransmitter Activity Leading to Muscle Contraction

• MCell Simulated: • The Transmission of 6,000 Molecules of the Neurotransmitter Acetylcholine (Cyan Specks) • In a Reconstructed Mouse Sternomastoid Neuromuscular Junction • Containing Acetylcholinesterase (White Spheres).

Rendered by Tom Bartol of the Salk Institute for Biological Studies & Joel Stiles of Cornell University

using Pixar PhotoRealistic RenderMan

www.npaci.edu/envision/v16.4/mcell.html

The Institute Will Focus on the Use of Highly Parallel and Distributed Systems

• PACI Distributed Terascale Linux Clusters– Multi-Teraflop– SDSC and NCSA Cluster Software

• High Performance Grids– Lambda Connected– Heterogeneous Compute and Storage

• DoE Labs– Highest End Machines– Experimental Architectures (Blue Light)

• Peer-to-Peer Computing– Millions of Processors– NT/Intel Homogenous PCs

Entropia’s Planetary Computer Grew to a Teraflop in Only Two Years

Deployed in Over 80 Countries

The Great Mersenne Prime (2P-1) Search (GIMPS)Found the First Million Digit Prime

www.entropia.comEight 1000p IBM Blue Horizons

Extending the Grid to Planetary Dimensions Using Distributed Computing and Storage

AutoDock Application Software Has Been Downloaded to Over 20,000 PCsNearly 3 Million CPU-Hours Computed

In SilicoDrug Design

Art Olson, TSRI