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The Algebra of Knots Sam Nelson Claremont McKenna College Sam Nelson The Algebra of Knots

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Page 1: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The Algebra of Knots

Sam Nelson

Claremont McKenna College

Sam Nelson The Algebra of Knots

Page 2: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Familiar Operations and Sets

Addition comes from unions:

Sam Nelson The Algebra of Knots

Page 3: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Familiar Operations and Sets

Addition comes from unions:

Sam Nelson The Algebra of Knots

Page 4: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Familiar Operations and Sets

Multiplication comes from matched pairs:

Sam Nelson The Algebra of Knots

Page 5: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Familiar Operations and Sets

Multiplication comes from matched pairs:

Sam Nelson The Algebra of Knots

Page 6: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Algebraic Properties

The properties of these familiar operations reflect properties ofthe set operations which inspired them.

Sam Nelson The Algebra of Knots

Page 7: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Algebraic Properties

Example: Associativity of addition

Sam Nelson The Algebra of Knots

Page 8: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Algebraic Properties

Example: Associativity of addition

Sam Nelson The Algebra of Knots

Page 9: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Algebraic Properties

Example: Associativity of addition

Sam Nelson The Algebra of Knots

Page 10: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Algebraic Properties

Example: Commutativity of multiplication

Sam Nelson The Algebra of Knots

Page 11: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Algebraic Properties

Example: Commutativity of multiplication

Sam Nelson The Algebra of Knots

Page 12: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Algebraic Properties

Example: Commutativity of multiplication

Sam Nelson The Algebra of Knots

Page 13: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Why sets?

Many useful real-world quantities behave like sets

Examples: lengths, masses, volumes, money

However, not every quantity behaves so simply

Examples: waves interfere, particles become entangled

Let us now consider operations inspired by knots:

Sam Nelson The Algebra of Knots

Page 14: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Why sets?

Many useful real-world quantities behave like sets

Examples: lengths, masses, volumes, money

However, not every quantity behaves so simply

Examples: waves interfere, particles become entangled

Let us now consider operations inspired by knots:

Sam Nelson The Algebra of Knots

Page 15: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Why sets?

Many useful real-world quantities behave like sets

Examples: lengths, masses, volumes, money

However, not every quantity behaves so simply

Examples: waves interfere, particles become entangled

Let us now consider operations inspired by knots:

Sam Nelson The Algebra of Knots

Page 16: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Why sets?

Many useful real-world quantities behave like sets

Examples: lengths, masses, volumes, money

However, not every quantity behaves so simply

Examples: waves interfere, particles become entangled

Let us now consider operations inspired by knots:

Sam Nelson The Algebra of Knots

Page 17: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Why sets?

Many useful real-world quantities behave like sets

Examples: lengths, masses, volumes, money

However, not every quantity behaves so simply

Examples: waves interfere, particles become entangled

Let us now consider operations inspired by knots:

Sam Nelson The Algebra of Knots

Page 18: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Why sets?

Many useful real-world quantities behave like sets

Examples: lengths, masses, volumes, money

However, not every quantity behaves so simply

Examples: waves interfere, particles become entangled

Let us now consider operations inspired by knots:

Sam Nelson The Algebra of Knots

Page 19: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knots

Definition: A knot is a simple closed curve inthree-dimensional space.

simple - does not intersect itself

closed - has no loose endpoints, i.e. forms a loop

Sam Nelson The Algebra of Knots

Page 20: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knots

Definition: A knot is a simple closed curve inthree-dimensional space.

simple - does not intersect itself

closed - has no loose endpoints, i.e. forms a loop

Sam Nelson The Algebra of Knots

Page 21: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knots

Definition: A knot is a simple closed curve inthree-dimensional space.

simple - does not intersect itself

closed - has no loose endpoints, i.e. forms a loop

Sam Nelson The Algebra of Knots

Page 22: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Diagrams

We represent knots with pictures called knot diagrams.

Sam Nelson The Algebra of Knots

Page 23: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Diagrams

Drawing a knot from a different angle or moving it around inspace will result in different diagrams of the same knot.

Sam Nelson The Algebra of Knots

Page 24: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Topology

Knots are topological objects, meaning that we consider twoknots the same if one can be changed into the other by:

moving the knot in space

stretching or shrinking in a continuous way

but not cutting and retying

Sam Nelson The Algebra of Knots

Page 25: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Topology

Knots are topological objects, meaning that we consider twoknots the same if one can be changed into the other by:

moving the knot in space

stretching or shrinking in a continuous way

but not cutting and retying

Sam Nelson The Algebra of Knots

Page 26: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Topology

Knots are topological objects, meaning that we consider twoknots the same if one can be changed into the other by:

moving the knot in space

stretching or shrinking in a continuous way

but not cutting and retying

Sam Nelson The Algebra of Knots

Page 27: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Topology

Knots are topological objects, meaning that we consider twoknots the same if one can be changed into the other by:

moving the knot in space

stretching or shrinking in a continuous way

but not cutting and retying

Sam Nelson The Algebra of Knots

Page 28: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Why Knots?

Many molecules (polymers, protein, DNA) are knots, andtheir chemical properties are determined in part by howthey’re knotted

Certain antibiotics work by blocking the action ofmolecules called topoisomerase which change how DNA isknotted; blocking the unknotting of the DNA stops thebacteria reproducing

Perhaps surprisingly, the mathematics of knots is relevantto the search for a theory of quantum gravity, a majorunsolved problem in physics

Besides, knots are just fun!

Sam Nelson The Algebra of Knots

Page 29: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Why Knots?

Many molecules (polymers, protein, DNA) are knots, andtheir chemical properties are determined in part by howthey’re knotted

Certain antibiotics work by blocking the action ofmolecules called topoisomerase which change how DNA isknotted; blocking the unknotting of the DNA stops thebacteria reproducing

Perhaps surprisingly, the mathematics of knots is relevantto the search for a theory of quantum gravity, a majorunsolved problem in physics

Besides, knots are just fun!

Sam Nelson The Algebra of Knots

Page 30: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Why Knots?

Many molecules (polymers, protein, DNA) are knots, andtheir chemical properties are determined in part by howthey’re knotted

Certain antibiotics work by blocking the action ofmolecules called topoisomerase which change how DNA isknotted; blocking the unknotting of the DNA stops thebacteria reproducing

Perhaps surprisingly, the mathematics of knots is relevantto the search for a theory of quantum gravity, a majorunsolved problem in physics

Besides, knots are just fun!

Sam Nelson The Algebra of Knots

Page 31: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Why Knots?

Many molecules (polymers, protein, DNA) are knots, andtheir chemical properties are determined in part by howthey’re knotted

Certain antibiotics work by blocking the action ofmolecules called topoisomerase which change how DNA isknotted; blocking the unknotting of the DNA stops thebacteria reproducing

Perhaps surprisingly, the mathematics of knots is relevantto the search for a theory of quantum gravity, a majorunsolved problem in physics

Besides, knots are just fun!

Sam Nelson The Algebra of Knots

Page 32: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Why Knots?

Many molecules (polymers, protein, DNA) are knots, andtheir chemical properties are determined in part by howthey’re knotted

Certain antibiotics work by blocking the action ofmolecules called topoisomerase which change how DNA isknotted; blocking the unknotting of the DNA stops thebacteria reproducing

Perhaps surprisingly, the mathematics of knots is relevantto the search for a theory of quantum gravity, a majorunsolved problem in physics

Besides, knots are just fun!

Sam Nelson The Algebra of Knots

Page 33: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The main problem

Given two knot diagrams K and K ′, how can we tell whetherthey represent the same knot?

Sam Nelson The Algebra of Knots

Page 34: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Reidemeister Moves

Sam Nelson The Algebra of Knots

Page 35: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Example

Sam Nelson The Algebra of Knots

Page 36: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Invariants

Quantities we can compute from a knot diagram

Get the same value for all diagrams of the same knot

Unchanged by Reidemeister moves

If K and K ′ have different invariant values, they representdifferent knots

Sam Nelson The Algebra of Knots

Page 37: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Invariants

Quantities we can compute from a knot diagram

Get the same value for all diagrams of the same knot

Unchanged by Reidemeister moves

If K and K ′ have different invariant values, they representdifferent knots

Sam Nelson The Algebra of Knots

Page 38: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Invariants

Quantities we can compute from a knot diagram

Get the same value for all diagrams of the same knot

Unchanged by Reidemeister moves

If K and K ′ have different invariant values, they representdifferent knots

Sam Nelson The Algebra of Knots

Page 39: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Invariants

Quantities we can compute from a knot diagram

Get the same value for all diagrams of the same knot

Unchanged by Reidemeister moves

If K and K ′ have different invariant values, they representdifferent knots

Sam Nelson The Algebra of Knots

Page 40: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Invariants

Quantities we can compute from a knot diagram

Get the same value for all diagrams of the same knot

Unchanged by Reidemeister moves

If K and K ′ have different invariant values, they representdifferent knots

Sam Nelson The Algebra of Knots

Page 41: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Invariants

Examples:

Alexander/Jones/HOMFLYpt/Kauffman polynomials

Knot group

Hyperbolic Volume

TQFTs

Khovanov Homology

Sam Nelson The Algebra of Knots

Page 42: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Invariants

Examples:

Alexander/Jones/HOMFLYpt/Kauffman polynomials

Knot group

Hyperbolic Volume

TQFTs

Khovanov Homology

Sam Nelson The Algebra of Knots

Page 43: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Invariants

Examples:

Alexander/Jones/HOMFLYpt/Kauffman polynomials

Knot group

Hyperbolic Volume

TQFTs

Khovanov Homology

Sam Nelson The Algebra of Knots

Page 44: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Invariants

Examples:

Alexander/Jones/HOMFLYpt/Kauffman polynomials

Knot group

Hyperbolic Volume

TQFTs

Khovanov Homology

Sam Nelson The Algebra of Knots

Page 45: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Invariants

Examples:

Alexander/Jones/HOMFLYpt/Kauffman polynomials

Knot group

Hyperbolic Volume

TQFTs

Khovanov Homology

Sam Nelson The Algebra of Knots

Page 46: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Knot Invariants

Examples:

Alexander/Jones/HOMFLYpt/Kauffman polynomials

Knot group

Hyperbolic Volume

TQFTs

Khovanov Homology

Sam Nelson The Algebra of Knots

Page 47: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

An algebraic knot invariant

Define an algebraic operation . from knot diagrams

Use Reidemeister moves to determine properties of theoperation

Find operations satisfying these axioms either by combiningexisting operations or by making operation tables

Sam Nelson The Algebra of Knots

Page 48: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

An algebraic knot invariant

Define an algebraic operation . from knot diagrams

Use Reidemeister moves to determine properties of theoperation

Find operations satisfying these axioms either by combiningexisting operations or by making operation tables

Sam Nelson The Algebra of Knots

Page 49: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

An algebraic knot invariant

Define an algebraic operation . from knot diagrams

Use Reidemeister moves to determine properties of theoperation

Find operations satisfying these axioms either by combiningexisting operations or by making operation tables

Sam Nelson The Algebra of Knots

Page 50: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

An algebraic knot invariant

Define an algebraic operation . from knot diagrams

Use Reidemeister moves to determine properties of theoperation

Find operations satisfying these axioms either by combiningexisting operations or by making operation tables

Sam Nelson The Algebra of Knots

Page 51: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei

(a.k.a. Involutory Quandles)

Attach a label to each arc in a knot diagram

When x goes under y, the result is x . y

Sam Nelson The Algebra of Knots

Page 52: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei

(a.k.a. Involutory Quandles)

Attach a label to each arc in a knot diagram

When x goes under y, the result is x . y

Sam Nelson The Algebra of Knots

Page 53: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei

(a.k.a. Involutory Quandles)

Attach a label to each arc in a knot diagram

When x goes under y, the result is x . y

Sam Nelson The Algebra of Knots

Page 54: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei

(a.k.a. Involutory Quandles)

Attach a label to each arc in a knot diagram

When x goes under y, the result is x . y

Sam Nelson The Algebra of Knots

Page 55: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei Axioms

x . x = x

Sam Nelson The Algebra of Knots

Page 56: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei Axioms

(x . y) . y = x

Sam Nelson The Algebra of Knots

Page 57: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei Axioms

(x . y) . z = (x . z) . (y . z)

Sam Nelson The Algebra of Knots

Page 58: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei

Thus, a kei is a set of labels with an operation . such that forall x, y, z we have

(i) x . x = x

(ii) (x . y) . y = x

(iii) (x . y) . z = (x . z) . (y . z)

Sam Nelson The Algebra of Knots

Page 59: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei

Thus, a kei is a set of labels with an operation . such that forall x, y, z we have

(i) x . x = x

(ii) (x . y) . y = x

(iii) (x . y) . z = (x . z) . (y . z)

Sam Nelson The Algebra of Knots

Page 60: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei

Thus, a kei is a set of labels with an operation . such that forall x, y, z we have

(i) x . x = x

(ii) (x . y) . y = x

(iii) (x . y) . z = (x . z) . (y . z)

Sam Nelson The Algebra of Knots

Page 61: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei

Thus, a kei is a set of labels with an operation . such that forall x, y, z we have

(i) x . x = x

(ii) (x . y) . y = x

(iii) (x . y) . z = (x . z) . (y . z)

Sam Nelson The Algebra of Knots

Page 62: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei Example

We can define kei operations using existing operations. Forexample, the integers Z have a kei operation given by

x . y = 2y − x.

To see that this is a kei operation, we need to verify that itsatisfies the axioms. For example,

x . x = 2x− x = x

Sam Nelson The Algebra of Knots

Page 63: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei Example

We can define kei operations using existing operations. Forexample, the integers Z have a kei operation given by

x . y = 2y − x.

To see that this is a kei operation, we need to verify that itsatisfies the axioms. For example,

x . x = 2x− x = x

Sam Nelson The Algebra of Knots

Page 64: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei Example

We can define kei operations using existing operations. Forexample, the integers Z have a kei operation given by

x . y = 2y − x.

To see that this is a kei operation, we need to verify that itsatisfies the axioms. For example,

x . x = 2x− x = x

Sam Nelson The Algebra of Knots

Page 65: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei Example

We can also specify a kei operation with an operationtable, just like a multiplication table:

. 1 2 3

1 1 3 22 3 2 13 2 1 3

Checking the axioms here must be done case-by-case and isbest handled by computer code.

Sam Nelson The Algebra of Knots

Page 66: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei Example

We can also specify a kei operation with an operationtable, just like a multiplication table:

. 1 2 3

1 1 3 22 3 2 13 2 1 3

Checking the axioms here must be done case-by-case and isbest handled by computer code.

Sam Nelson The Algebra of Knots

Page 67: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Kei Example

We can also specify a kei operation with an operationtable, just like a multiplication table:

. 1 2 3

1 1 3 22 3 2 13 2 1 3

Checking the axioms here must be done case-by-case and isbest handled by computer code.

Sam Nelson The Algebra of Knots

Page 68: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The counting invariant

A valid labeling of a knot diagram by a kei must satisfy thecrossing condition at every crossing.

. 1 2 3

1 1 3 22 3 2 13 2 1 3

Sam Nelson The Algebra of Knots

Page 69: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The counting invariant

If a labeling of a knot diagram by a kei fails to satisfy thecrossing condition at any crossing, it is invalid.

. 1 2 3

1 1 3 22 3 2 13 2 1 3

Sam Nelson The Algebra of Knots

Page 70: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The counting invariant

Because of the kei axioms, every valid labeling of a diagrambefore a move corresponds to a unique valid labeling after amove.

Sam Nelson The Algebra of Knots

Page 71: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The counting invariant

Any two diagrams of the same knot will have same number ofvalid labelings by your favorite kei. So, to tell knots apart,

we count the valid labelings!

Sam Nelson The Algebra of Knots

Page 72: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The counting invariant

Any two diagrams of the same knot will have same number ofvalid labelings by your favorite kei. So, to tell knots apart,

we count the valid labelings!

Sam Nelson The Algebra of Knots

Page 73: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The counting invariant

If our set of labels is finite, there are only finitely manypossible labelings

So we can list all possible labelings and count how manyare valid

This number will be the same for all diagrams of K

So it is a knot invariant, called the kei counting invariant

Sam Nelson The Algebra of Knots

Page 74: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The counting invariant

If our set of labels is finite, there are only finitely manypossible labelings

So we can list all possible labelings and count how manyare valid

This number will be the same for all diagrams of K

So it is a knot invariant, called the kei counting invariant

Sam Nelson The Algebra of Knots

Page 75: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The counting invariant

If our set of labels is finite, there are only finitely manypossible labelings

So we can list all possible labelings and count how manyare valid

This number will be the same for all diagrams of K

So it is a knot invariant, called the kei counting invariant

Sam Nelson The Algebra of Knots

Page 76: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The counting invariant

If our set of labels is finite, there are only finitely manypossible labelings

So we can list all possible labelings and count how manyare valid

This number will be the same for all diagrams of K

So it is a knot invariant, called the kei counting invariant

Sam Nelson The Algebra of Knots

Page 77: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The counting invariant

If our set of labels is finite, there are only finitely manypossible labelings

So we can list all possible labelings and count how manyare valid

This number will be the same for all diagrams of K

So it is a knot invariant, called the kei counting invariant

Sam Nelson The Algebra of Knots

Page 78: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

The counting invariant

The unknot has three labelings by our three-element kei:

Sam Nelson The Algebra of Knots

Page 79: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

A knot invariant

The trefoil has nine labelings by our three-element kei:

Sam Nelson The Algebra of Knots

Page 80: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

A knot invariant

3 6= 9, and the kei counting invariant shows that no sequence ofReidemeister moves can unknot the trefoil.

Sam Nelson The Algebra of Knots

Page 81: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Generalizations of Kei

An oriented knot has a preferred direction of travel.

Sam Nelson The Algebra of Knots

Page 82: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Generalizations of Kei

Orienting K changes axiom (ii) to allow .−1 to be differentfrom .; the resulting object is called a quandle

Sam Nelson The Algebra of Knots

Page 83: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Generalizations of Kei

Orienting K changes axiom (ii) to allow .−1 to be differentfrom .; the resulting object is called a quandle

Sam Nelson The Algebra of Knots

Page 84: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Generalizations of Kei

Replacing the type I move with a doubled version gives usframed knots which are like physical knots

This eliminates quandle axiom (i); the resulting object iscalled a rack

Sam Nelson The Algebra of Knots

Page 85: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Generalizations of Kei

Replacing the type I move with a doubled version gives usframed knots which are like physical knots

This eliminates quandle axiom (i); the resulting object iscalled a rack

Sam Nelson The Algebra of Knots

Page 86: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Generalizations of Kei

Replacing the type I move with a doubled version gives usframed knots which are like physical knots

This eliminates quandle axiom (i); the resulting object iscalled a rack

Sam Nelson The Algebra of Knots

Page 87: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Generalizations of Kei

Dividing the arcs at over-crossings to get semi-arcs letsboth inputs act on each other

The resulting algebraic structures are called bikei,biquandles and biracks

These are solutions to the Yang-Baxter Equation fromstatistical mechanics

Sam Nelson The Algebra of Knots

Page 88: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Generalizations of Kei

Dividing the arcs at over-crossings to get semi-arcs letsboth inputs act on each other

The resulting algebraic structures are called bikei,biquandles and biracks

These are solutions to the Yang-Baxter Equation fromstatistical mechanics

Sam Nelson The Algebra of Knots

Page 89: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Generalizations of Kei

Dividing the arcs at over-crossings to get semi-arcs letsboth inputs act on each other

The resulting algebraic structures are called bikei,biquandles and biracks

These are solutions to the Yang-Baxter Equation fromstatistical mechanics

Sam Nelson The Algebra of Knots

Page 90: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Generalizations of Kei

Dividing the arcs at over-crossings to get semi-arcs letsboth inputs act on each other

The resulting algebraic structures are called bikei,biquandles and biracks

These are solutions to the Yang-Baxter Equation fromstatistical mechanics

Sam Nelson The Algebra of Knots

Page 91: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhanced Invariants

A signature is a quantity computable from a labeled knotdiagram which is invariant under labeled moves

Counting signatures instead of labelings defines strongerinvariants

Sam Nelson The Algebra of Knots

Page 92: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhanced Invariants

A signature is a quantity computable from a labeled knotdiagram which is invariant under labeled moves

Counting signatures instead of labelings defines strongerinvariants

Sam Nelson The Algebra of Knots

Page 93: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhanced Invariants

A signature is a quantity computable from a labeled knotdiagram which is invariant under labeled moves

Counting signatures instead of labelings defines strongerinvariants

Sam Nelson The Algebra of Knots

Page 94: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhanced Invariants

Example: For each labeling, count uc where c is the number oflabels used. This is called the image-enhanced countinginvariant, denoted ΦIm

X .

Sam Nelson The Algebra of Knots

Page 95: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhanced Invariants

ΦImX (Unknot) = u + u + u = 3u

Sam Nelson The Algebra of Knots

Page 96: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhanced Invariants

ΦImX (31) = 3u + 6u3

Sam Nelson The Algebra of Knots

Page 97: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can come from the general structure of thelabeling object.

Image enhancements

Writhe enhancements

Quandle polynomials

Column groups

Sam Nelson The Algebra of Knots

Page 98: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can come from the general structure of thelabeling object.

Image enhancements

Writhe enhancements

Quandle polynomials

Column groups

Sam Nelson The Algebra of Knots

Page 99: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can come from the general structure of thelabeling object.

Image enhancements

Writhe enhancements

Quandle polynomials

Column groups

Sam Nelson The Algebra of Knots

Page 100: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can come from the general structure of thelabeling object.

Image enhancements

Writhe enhancements

Quandle polynomials

Column groups

Sam Nelson The Algebra of Knots

Page 101: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can come from the general structure of thelabeling object.

Image enhancements

Writhe enhancements

Quandle polynomials

Column groups

Sam Nelson The Algebra of Knots

Page 102: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can come from using special types of labelingobjects.

Symplectic quandle invariants

Bilinear biquandle invariants

Coxeter rack invariants

(t, s)-rack invariants

Sam Nelson The Algebra of Knots

Page 103: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can come from using special types of labelingobjects.

Symplectic quandle invariants

Bilinear biquandle invariants

Coxeter rack invariants

(t, s)-rack invariants

Sam Nelson The Algebra of Knots

Page 104: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can come from using special types of labelingobjects.

Symplectic quandle invariants

Bilinear biquandle invariants

Coxeter rack invariants

(t, s)-rack invariants

Sam Nelson The Algebra of Knots

Page 105: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can come from using special types of labelingobjects.

Symplectic quandle invariants

Bilinear biquandle invariants

Coxeter rack invariants

(t, s)-rack invariants

Sam Nelson The Algebra of Knots

Page 106: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can come from using special types of labelingobjects.

Symplectic quandle invariants

Bilinear biquandle invariants

Coxeter rack invariants

(t, s)-rack invariants

Sam Nelson The Algebra of Knots

Page 107: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can also come from additional structures.

Quandle 2-cocycles

Rack shadows

Rack algebras

Sam Nelson The Algebra of Knots

Page 108: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can also come from additional structures.

Quandle 2-cocycles

Rack shadows

Rack algebras

Sam Nelson The Algebra of Knots

Page 109: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can also come from additional structures.

Quandle 2-cocycles

Rack shadows

Rack algebras

Sam Nelson The Algebra of Knots

Page 110: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Enhancements

Enhancements can also come from additional structures.

Quandle 2-cocycles

Rack shadows

Rack algebras

Sam Nelson The Algebra of Knots

Page 111: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Tying it all up...

Algebra from knots seems weird at first,

but the algebraic structures arising from knots haveapplication in biology, chemistry, physics. . .

and who knows where else?

You can help find out!

Sam Nelson The Algebra of Knots

Page 112: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Tying it all up...

Algebra from knots seems weird at first,

but the algebraic structures arising from knots haveapplication in biology, chemistry, physics. . .

and who knows where else?

You can help find out!

Sam Nelson The Algebra of Knots

Page 113: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Tying it all up...

Algebra from knots seems weird at first,

but the algebraic structures arising from knots haveapplication in biology, chemistry, physics. . .

and who knows where else?

You can help find out!

Sam Nelson The Algebra of Knots

Page 114: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Tying it all up...

Algebra from knots seems weird at first,

but the algebraic structures arising from knots haveapplication in biology, chemistry, physics. . .

and who knows where else?

You can help find out!

Sam Nelson The Algebra of Knots

Page 115: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Tying it all up...

Algebra from knots seems weird at first,

but the algebraic structures arising from knots haveapplication in biology, chemistry, physics. . .

and who knows where else?

You can help find out!

Sam Nelson The Algebra of Knots

Page 116: The Algebra of Knots - Fullerton CollegestaffSam Nelson The Algebra of Knots. Why Knots? Many molecules (polymers, protein, DNA) are knots, and their chemical properties are determined

Thanks for Listening!

Sam Nelson The Algebra of Knots