table 1. suppl. primers used for real-time qpcr analysis.10.1007... · · 2017-05-19primers used...
TRANSCRIPT
Table 1. Suppl. Primers used for real-time qPCR analysis.
Gene name Unigene ID Sequence (5ʹ-3ʹ)
C4H 54449 CTGGTAAATCTCACGGGTCATGGGAAGAGTCCATTACTTTGGTCAG
CHS 10609 TGGGTGTCTTGTTTGGATTTGGCGGATTACTACACACACTTACAAGCC
F3H 1667 CCACTATTTTCTCTCTCACTTTCCA CCACCGAACTGCCTTTACCT
FLS 44780 GCCAACGGAAGTGAAACAGAGATGAGGAGGAAGATAGTGAAGGAA
625 ACCCTGTCCAAGACCAGACCCCACCGAACTGCCTTTACCT
OMT 49313 ACGCCAAATGATAACTACGCTTCTCGCAGTTCTCTCTTTACCACCT
49335 CCTTATGGTTTGGTGTTGTGGCTCGCAAATGGTAATCCCGTCTC
F3'H 22319 CAACAAGCTCAAGATTCTTTCATGCATCGTCAGTGTCGTCGTCC
F3'5'H 42301 CACGAGATTGATGCTGGACGATCATTATTCTTGCTCCTACCGC
MYBF1 11090 ACAACAAGAAGAAGCACGATGGGGGAAAGGATGACTGGTAGGTG
Actin GGAATCCACGAGACCACCTACAGATTGATCCTCCGATCCAGACA
Table 2 Suppl. UPLC-MS data of compounds (CE - collision energy, RT - retention time).
Compounds Precursors Fragmentors CE Product ion RT [min] Calibration curves R2
Dihydromyricetin 319.1 105 12 193 2.38 y=2098.66*x-7.81 0.999
Taxifolin 303.1 115 12 285 3.47 y=2177.73*x+29.39 0.999
Isorhamnetin-3-
O-neohespeidoside
623.1 160 40 314 4.62 y=566.66*x+14.16 0.9999
Quercetin 301.1 130 30 115 8.23 y=1195.89*x+38.01 0.9999
Isorhamnetin 315.1 120 20 300 9.04 y=14231.54*x+1487.50 0.9906
Kaempferide 299.1 130 22 284 9.55 y=6115.72*x+84.67 0.9998
Hyperoside 463.1 170 27 300 4.75 y=5547.72*x+1.09 0.9999
Myricetin 317.1 130 28 151 5.79 y=975.88*x+83.00 0.9989
Rutin 609.1 200 35 300 4.93 y=2416.98*x+26.20 0.9997
Table 3 Suppl. Number of unigenes related to the flavonoids synthesis pathway under NaCl-treatment in
Reaumuria trigyna (Deg/all - the ratio of DEGs among the annotated unigenes).
Gene All Deg Upregulated Downregulated Deg/all [%] Up/deg [%]
PAL 11 4 0 4 36 0
C4H 9 1 1 0 11 100
4CL 23 5 4 1 22 80
CHS 11 6 2 4 55 33
CHI 6 1 0 1 17 0
F3H 8 3 3 0 38 100
FLS 6 6 4 2 100 57
F3’H 2 2 1 1 100 50
F3’5’H 3 2 1 1 67 50
UFGT 5 5 2 3 100 40
OMT 6 6 6 0 100 100
DFR 4 4 0 4 100 0
IFR 5 5 0 5 100 0
LDOX 3 2 1 1 60 50
CYP450 16 16 16 0 100 100
Table 4 Suppl. Putative transcription factors related to the flavonoid synthesis pathway in Reaumuria trigyna (Fold
change - relative fold-increase in expression of target genes in NaCl stress as compared to respective control.)
Gene name Gene ID Gene
length [bp]
Accession Fold
change
Identity
[%]
Function Reference
MYBF1 unigene11090 947 gi|289623206|
Vitis vinifera
8.22 79 regulation of flavonol synthesis (Czemmel et al.
2009)
MYB5b unigene4486 648 gi|526117769|
Vitis vinifera
1.13 78 regulation of anthocyanin and
proanthocyanidin biosynthesis
(Deluc et al.
2008)
MYB1 unigene14669 449 gi|23476279|
Gossypium hirsutum
0.63 81 regulation of polyphenols
accumulation
(Bomal et al.
2008)
unigene15466 1440 gi|23476279|
Gossypium hirsutum
3.73 72
MYB3 unigene972 678 gi|2921333|
Lotus japonicus
0.56 82 regulating anthocyanin
biosynthesis in flower
(Nakatsuka et al.
2008)
unigene 1212 1088 gi|731317153|
Arabidopsis thaliana
0.38 80
MYCA1 unigene13791 1902 gi|526118174|
Vitis vinifera
1.00 75 related to flavonoid synthesis (Matus et al.
2010)
bHLH3 unigene1295 992 gi|38490122|
Cornus capitata
1.27 78 regulation of anthocyanin
biosynthesis pathway
(Espley et al.
2007)
unigene29229 964 gi|302398604|
Malus x domestica
0.97 80
MYC1 unigene 19039 1214 gi|33339703|
Catharanthus roseus
0.55 75 promotion of anthocyanin
accumulation in grape cells
(Hichri et al.
2010)
unigene55994 581 gi|33339703|
Catharanthus roseus
1.32 78
MYB32 unigene 46082 252 gi|71041091|
Malus x domestica
5.62 78 regulation of polyphenols
accumulation
(Dubos et al.
2010)
WRKY23 unigene14033 1913 gi|42570003|
Arabidopsis thaliana
2.95 79 control of flavonol
biosynthesis
(Grunewald et
al. 2012)
Gen
e na
me
Gen
e ID
G
ene
Len
gth
C21
_raw
read
s (8
4865
31)
C21
_RPK
M
T43
_raw
read
s (9
5602
48)
T43
_RPK
M
log2
(T43
_RPK
M
/C21
_RPK
M)
Ann
otat
ion
phen
ylal
anin
e am
mon
ia-ly
ase,
PA
L
Uni
gene
10
418_
All
283
96
39.9
719
130
48.0
494
0.26
55
gi|1
8803
7480
|gb|
AB
N79
671.
2|
[Rud
beck
ia h
irta
] U
nige
ne
1179
8_A
ll 89
6 38
1 50
.105
7 15
2 17
.744
6 -1
.497
6 gi
|295
0026
04|g
b|A
DF5
9061
.1|
[Pyr
us x
bre
tsch
neid
eri]
Uni
gene
13
929_
All
1840
97
2 62
.247
11
74
66.7
392
0.10
05
gi|2
5350
9589
|gb|
AC
T320
33.1
| [G
lyci
ne so
ja]
Uni
gene
17
23_A
ll 21
41
522
28.7
292
157
7.67
03
-1.9
052
gi|3
0243
60|sp
|Q42
667.
1|
[Citr
us li
mon
] U
nige
ne
3038
8_A
ll 35
9 42
5 13
9.49
68
404
117.
7112
-0
.245
gi
|224
0687
33|re
f|XP_
0023
2618
6.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
30
947_
All
267
62
27.3
622
58
22.7
221
-0.2
681
gi|2
4191
2463
|gb|
AC
S719
53.1
| [E
upho
rbia
pul
cher
rim
a]
Uni
gene
39
79_A
ll 31
1 50
18
.944
3 13
4.
3723
-2
.115
3 gi
|241
9124
63|g
b|A
CS7
1953
.1|
[Eup
horb
ia p
ulch
erri
ma]
U
nige
ne
6291
6_A
ll 29
3 40
4 16
2.47
39
333
118.
8796
-0
.450
7 gi
|190
7107
09|g
b|A
CE9
5170
.1|
[Pop
ulus
tom
ento
sa]
Uni
gene
79
35_A
ll 45
1 16
8 43
.893
7 71
16
.466
9 -1
.414
4 gi
|224
0687
33|re
f|XP_
0023
2618
6.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
80
63_A
ll 59
6 66
4 13
1.27
79
553
97.0
532
-0.4
358
gi|2
3768
2387
|gb|
AC
R10
243.
1|
[Can
ariu
m a
lbum
] U
nige
ne
9595
_All
221
125
66.6
481
134
63.4
225
-0.0
716
gi|5
6409
806|
emb|
CAH
1768
6.1|
[B
eta
vulg
aris
]
Table5Supp
l.Cand
idateun
igen
esann
otated
toflavono
idbiosynthe
sispathw
ayand
differentia
llyexpressedbetweencontrol(C2
1)and
Na
Cl-treatedsamples(T
43)inRe
aumuriatrigyna.
Gen
e na
me
Gen
e ID
G
ene
Len
gth
C21
_raw
read
s (8
4865
31)
C21
_RPK
M
T43
_raw
read
s (9
5602
48)
T43
_RPK
M
log2
(T43
_RPK
M
/C21
_RPK
M)
Ann
otat
ion
cinn
amat
e-4-
hydr
oxyl
ate,
C4H
Uni
gene
14
792_
All
520
19
4.30
55
15
3.01
73
-0.5
129
gi|9
8283
650|
gb|A
BF5
8026
.1|
[Hib
iscu
s can
nabi
nus]
U
nige
ne
1936
5_A
ll 38
7 41
1 12
5.14
13
317
85.6
799
-0.5
465
gi|4
7933
894|
gb|A
AT3
9513
.1|
[Cam
ptot
heca
acu
min
ata]
U
nige
ne
2007
3_A
ll 31
2 63
8 24
0.95
5 44
0 14
7.51
25
-0.7
079
gi|2
8402
2951
|gb|
AD
B65
927.
1|
[Ipo
moe
a ba
tata
s]
Uni
gene
21
626_
All
620
904
171.
8092
58
8 99
.201
1 -0
.792
4 gi
|237
6823
85|g
b|A
CR
1024
2.1|
[C
anar
ium
alb
um]
Uni
gene
26
866_
All
737
34
5.43
6 46
6.
5286
0.
2642
gi
|237
6823
85|g
b|A
CR
1024
2.1|
[C
anar
ium
alb
um]
Uni
gene
26
989_
All
557
74
15.6
548
146
27.4
175
0.80
85
gi|2
8402
2951
|gb|
AD
B65
927.
1|
[Ipo
moe
a ba
tata
s]
Uni
gene
32
040_
All
370
153
48.7
259
255
72.0
89
0.56
51
gi|8
4578
865|
dbj|B
AE7
2875
.1|
[Ver
bena
x h
ybri
da]
Uni
gene
54
449_
All
663
16
2.84
37
42
6.62
62
1.22
04
gi|8
4578
865|
dbj|B
AE7
2875
.1|
[Ver
bena
x h
ybri
da]
Uni
gene
83
52_A
ll 67
5 42
9 74
.889
9 52
9 81
.975
2 0.
1304
gi
|161
5977
79|g
b|A
BX
7477
9.1|
[R
ubus
cor
eanu
s]
4-co
umar
ate-
coal
igas
e,
4CL
Uni
gene
11
762_
All
424
251
69.7
554
308
75.9
829
0.12
34
gi|2
2413
6077
|ref|X
P_00
2322
234.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
1857
5_A
ll 82
1 17
2.
4399
43
5.
4784
1.
1669
gi
|224
0859
96|re
f|XP_
0023
0777
0.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
18
690_
All
1882
34
0 21
.287
7 38
5 21
.397
9 0.
0074
gi
|224
1219
30|re
f|XP_
0023
1870
8.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
18
960_
All
721
50
8.17
16
58
8.41
44
0.04
22
gi|2
2407
4401
|ref|X
P_00
2304
364.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
1901
2_A
ll 80
3 12
5 18
.342
7 81
10
.551
2 -0
.797
8 gi
|224
1330
70|re
f|XP_
0023
2795
4.1|
[P
opul
us tr
icho
carp
a]
Gen
e na
me
Gen
e ID
G
ene
Len
gth
C21
_raw
read
s (8
4865
31)
C21
_RPK
M
T43
_raw
read
s (9
5602
48)
T43
_RPK
M
log2
(T43
_RPK
M
/C21
_RPK
M)
Ann
otat
ion
4-co
umar
ate-
coal
igas
e,
4CL
Uni
gene
21
064_
All
1503
47
0 36
.847
6 24
6 17
.120
1 -1
.105
9 gi
|294
5169
38|g
b|A
DE9
6997
.1|
[Sor
bus a
ucup
aria
] U
nige
ne
2298
1_A
ll 23
9 46
9 23
1.23
03
441
193.
0063
-0
.260
7 gi
|187
2367
98|g
b|A
CD
0213
5.1|
[P
anic
um v
irga
tum
] U
nige
ne
2310
1_A
ll 33
5 6
2.11
05
38
11.8
651
2.49
11
gi|2
2408
5996
|ref|X
P_00
2307
770.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
2606
0_A
ll 76
1 93
7 14
5.08
57
1138
15
6.41
86
0.10
85
gi|2
2412
6051
|ref|X
P_00
2329
649.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
2843
1_A
ll 69
4 17
9 30
.392
3 12
6 18
.990
7 -0
.678
4 gi
|294
5169
38|g
b|A
DE9
6997
.1|
[Sor
bus a
ucup
aria
] U
nige
ne
2874
3_A
ll 70
7 31
3 52
.166
9 37
2 55
.037
0.
0773
gi
|224
1219
30|re
f|XP_
0023
1870
8.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
55
989_
All
2314
11
0 5.
6014
21
6 9.
7639
0.
8017
gi
|224
0775
16|re
f|XP_
0023
0528
2.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
69
50_A
ll 19
90
877
51.9
298
2266
11
9.10
71
1.19
76
gi|2
2413
7016
|ref|X
P_00
2322
473.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
8526
_All
483
16
3.90
34
12
2.59
88
-0.5
869
gi|2
6863
6247
|gb|
AC
Z173
92.1
| [V
itis v
inife
ra]
Uni
gene
91
29_A
ll 12
65
135
12.5
751
149
12.3
205
-0.0
295
gi|2
2413
3070
|ref|X
P_00
2327
954.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
3011
1_A
ll 38
6 35
7 10
8.98
1 44
4 12
0.31
69
0.14
28
gi|9
6519
15|g
b|A
AF9
1309
.1|
[Rub
us id
aeus
] U
nige
ne
3444
8_A
ll 52
5 43
3 97
.184
8 50
7 10
1.01
35
0.05
57
gi|2
2412
1930
|ref|X
P_00
2318
708.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
3484
4_A
ll 74
1 18
2.
8624
15
2.
1174
-0
.434
9 gi
|224
1219
30|re
f|XP_
0023
1870
8.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
37
4_A
ll 92
5 90
3 11
5.03
12
1684
19
0.42
82
0.72
72
gi|2
2412
7758
|ref|X
P_00
2329
170.
1|
[Pop
ulus
tric
hoca
rpa]
Gen
e na
me
Gen
e ID
G
ene
Len
gth
C21
_raw
read
s (8
4865
31)
C21
_RPK
M
T43
_raw
read
s (9
5602
48)
T43
_RP
KM
lo
g2(T
43_R
PK
M/C
21_R
PKM
) A
nnot
atio
n
4-co
umar
ate-
coa
ligas
e,
4CL
Uni
gene
40
111_
All
316
84
3.37
73
35
1.43
49
8.37
07
gi|2
2407
4393
|ref|X
P_00
2304
363.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
4138
1_A
ll 20
73
214
12.1
642
335
16.9
035
0.47
47
gi|2
2407
7516
|ref|X
P_00
2305
282.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
4866
6_A
ll 37
2 66
3 21
0.01
02
1205
33
8.82
46
0.69
01
gi|2
2412
7758
|ref|X
P_00
2329
170.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
5163
_All
1943
22
1 13
.402
6 40
4 21
.749
0.
6984
gi
|224
0859
96|re
f|XP_
0023
0777
0.1|
[P
opul
us tr
icho
carp
a]
chal
cone
sy
ntha
se,
CH
S
Uni
gene
10
609_
All
332
38
13.4
87
125
39.3
825
1.54
6 gi
|122
2961
3|sp
|Q9X
GX
2.1|
[S
orgh
um b
icol
or]
Uni
gene
10
759_
All
365
532
171.
7468
79
6 22
8.11
35
0.40
95
gi|2
9363
2014
|gb|
AD
E594
87.1
| [M
usa
acum
inat
a AA
A G
roup
] U
nige
ne
1782
8_A
ll 26
4 73
4 32
7.61
36
243
96.2
794
-1.7
667
sp|P
1795
7|
[Gly
cine
max
] U
nige
ne
2638
7_A
ll 37
4 12
88
405.
8019
53
0 14
8.22
97
-1.4
529
gi|3
2329
248|
gb|A
AP7
4755
.1|
[Gyp
soph
ila p
anic
ulat
a]
Uni
gene
26
797_
All
452
2292
59
7.51
11
866
200.
4058
-1
.576
gi
|300
8852
73|g
b|A
DK
4532
5.1|
[F
allo
pia
mul
tiflo
ra]
Uni
gene
33
350_
All
351
13
4.36
42
6 1.
788
-1.2
874
gi|1
5851
5815
|gb|
AB
W69
675.
1|
[Ipo
moe
a pu
rpur
ea]
Uni
gene
39
67_A
ll 30
1 21
4 83
.775
5 36
8 12
7.88
28
0.61
02
gi|3
4850
869|
dbj|B
AC
8786
3.1|
[T
oren
ia h
ybri
da]
Uni
gene
43
107_
All
208
284
160.
8884
37
1 18
6.56
98
0.21
37
gi|2
9336
939|
sp|Q
9FSC
0.1|
[R
uta
grav
eole
ns]
Uni
gene
49
878_
All
206
1 0.
572
2 1.
0155
0.
8281
gi
|867
5321
7|gb
|ABD
1473
8.1|
[R
uta
grav
eole
ns]
Uni
gene
54
191_
All
343
5 1.
7177
26
7.
9288
2.
2066
gi
|999
2378
1|gb
|AB
F688
80.1
| [C
arda
min
e pe
ctin
ata]
U
nige
ne
5960
1_A
ll 23
1 26
5 13
5.17
7 34
0 15
3.95
6 0.
1877
gi
|861
6157
2|gb
|AB
C86
919.
1|
[Pop
ulus
alb
a]
Gen
e na
me
Gen
e ID
G
ene
Len
gh
C21
_raw
read
s (8
4865
31)
C21
_RPK
M
T43
_raw
read
s (9
5602
48)
T43
_RPK
M
log2
(T43
_RPK
M
/C21
_RPK
M)
Ann
otat
ion
chal
cone
is
omer
ase,
C
HI
Uni
gene
23
656_
All
807
203
29.6
41
102
13.2
208
-1.1
648
gi|2
3994
9926
|gb|
AC
S366
62.1
| [V
itis l
abru
sca]
U
nige
ne
2501
7_A
ll 80
3 39
5.
7229
73
9.
5091
0.
7326
gi
|425
6934
2|re
f|NP_
1801
99.3
| [A
rabi
dops
is th
alia
na]
U
nige
ne
2379
9_A
ll 27
6 15
7 67
.028
6 17
2 65
.185
4 -0
.040
2 gi
|122
2334
81|sp
|Q45
QI7
.2|
[Cam
ellia
sine
nsis
] U
nige
ne
2956
5_A
ll 90
4 95
3 12
4.22
08
709
82.0
368
-0.5
986
gi|2
2411
9114
|ref|X
P_00
2331
328.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
4002
_All
377
579
180.
9702
40
5 11
2.36
85
-0.6
875
gi|2
2470
8766
|gb|
AC
N60
401.
1|
[Cap
sicu
m a
nnuu
m]
Uni
gene
66
85_A
ll 39
9 15
8 46
.661
10
6 27
.788
4 -0
.747
7 gi
|170
7837
64|g
b|A
CB
3736
6.1|
[G
lyci
ne m
ax]
flava
none
3-
hydr
oxyl
ase
, F3H
Uni
gene
13
22_A
ll 10
23
926
106.
6609
68
9 70
.448
9 -0
.598
4 gi
|119
6570
97|g
b|A
BL8
6673
.1
|[Gos
sypi
um b
arba
dens
e]
Uni
gene
16
67_A
ll 12
63
175
16.3
269
128
10.6
008
-0.6
231
gi|2
9780
8467
|ref|X
P_00
2872
117.
1|
[Ara
bido
psis
lyra
ta su
bsp.
lyra
ta]
Uni
gene
29
546_
All
642
70
12.8
479
194
31.6
08
1.29
88
gi|1
1547
6924
|ref|N
P_00
1062
058.
1|
[Ory
za sa
tiva
Japo
nica
Gro
up]
Uni
gene
29
669_
All
1116
12
8 13
.515
17
7 16
.589
8 0.
2957
gi
|115
4769
24|re
f|NP_
0010
6205
8.1|
[O
ryza
sativ
a Ja
poni
ca G
roup
] U
nige
ne
3307
9_A
ll 43
5 79
21
.399
7 22
2 53
.382
1.
3188
gi
|115
4769
24|re
f|NP_
0010
6205
8.1|
[O
ryza
sativ
a Ja
poni
ca G
roup
] U
nige
ne
3421
_All
310
115
43.7
125
287
96.8
392
1.14
75
gi|2
2410
3505
|ref|X
P_00
2313
083.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
4198
8_A
ll 68
9 59
10
.090
3 74
11
.234
2 0.
1549
gi
|240
2559
24|re
f|NP_
5674
91.5
| [A
rabi
dops
is th
alia
na]
Uni
gene
60
106_
All
237
207
102.
9181
12
5 55
.168
7 -0
.899
6 gi
|238
6252
81|g
b|A
CR
4797
6.1|
[J
ugla
ns re
gia]
Gen
e na
me
Gen
e ID
G
ene
Len
gth
C21
_raw
read
s (8
4865
31)
C21
_RP
KM
T
43_r
awre
ads
(956
0248
) T
43_R
PKM
lo
g2(T
43_R
PK
M/C
21_R
PKM
) A
nnot
atio
n
flavo
nol
synt
hase
, FL
S
Uni
gene
23
941_
All
237
381
189.
429
179
79.0
015
-1.2
617
gi|2
2104
7210
|gb|
AC
L980
52.1
| [C
amel
lia si
nens
is]
Uni
gene
44
780_
All
231
173
88.2
478
489
221.
4255
1.
3272
gi
|224
1035
03|re
f|XP_
0023
1308
2.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
59
864_
All
234
4 2.
0143
36
16
.092
3 2.
998
gi|2
6888
28|g
b|A
AB
8887
8.1|
[P
runu
s arm
enia
ca]
Uni
gene
60
648_
All
244
622
300.
3795
33
2 14
2.32
43
-1.0
776
gi|2
2406
3126
|ref|X
P_00
2301
003.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
625_
All
1404
15
6 13
.092
6 97
8 72
.862
3 2.
4764
gi
|184
0299
2|re
f|NP_
5666
85.1
| [A
rabi
dops
is th
alia
na]
Uni
gene
64
863_
All
526
6 1.
3441
25
2 50
.112
5 5.
2205
gi
|297
8065
77|re
f|XP_
0028
7117
2.1|
[A
rabi
dops
is ly
rata
subs
p. ly
rata
]
flavo
noid
3'
-hyd
roxy
lase
, F3
'H
Uni
gene
13
978_
All
1396
16
81
141.
8901
77
1 57
.769
7 -1
.296
4 gi
|144
2332
7|gb
|AA
K62
346.
1|
[Viti
s vin
ifera
] U
nige
ne
2231
9_A
ll 10
15
134
7.62
6 74
15
.556
4 1.
0285
gi
|304
2143
3|gb
|AA
P310
58.1
| [P
opul
us tr
icho
carp
a]
flavo
noid
3'
,5'-h
ydro
xyla
se,
F3
'5'H
Uni
gene
29
604_
All
785
210
31.5
224
247
32.9
123
0.06
22
gi|3
0421
433|
gb|A
AP3
1058
.1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
4230
1_A
ll 20
1 2
0.52
04
1 1.
1725
1.
1719
gi
|224
1267
37|re
f|XP_
0023
1991
4.1|
[G
ossy
pium
hir
sutu
m]
Uni
gene
45
635_
All
245
10
4.80
95
1 0.
4269
-3
.493
9 gi
|297
8118
49|re
f|XP_
0028
7380
8.1|
[G
ossy
pium
hir
sutu
m]
UD
P fla
vono
id
gluc
osyl
tra
nsfe
rase
, U
FGT
Uni
gene
63
776_
All
340
7 2.
426
34
10.4
6 2.
1082
gi
|528
3967
6|db
j|BA
D52
003.
1|
[Mor
ella
rubr
a]
Uni
gene
20
183_
All
481
26
6.36
94
83
18.0
494
1.50
27
gi|2
0995
4711
|dbj
|BA
G80
546.
1|
[Viti
s vin
ifera
]
Gen
e na
me
Gen
e ID
G
ene
Len
gth
C21
_raw
read
s (8
4865
31)
C21
_RP
KM
T
43_r
awre
ads
(956
0248
) T
43_R
PK
M
log2
(T43
_RPK
M
/C21
_RPK
M)
Ann
otat
ion
UD
P fla
vono
id
gluc
osyl
tra
nsfe
rase
, U
FGT
Uni
gene
13
453_
All
408
150
43.3
212
28
7.17
84
-2.5
933
gi|2
2285
8290
|gb|
EEE9
5837
.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
14
481_
All
939
259
32.5
015
78
8.68
88
-1.9
033
gi|2
9731
9645
|gb|
EFH
5006
7.1|
[A
rabi
dops
is ly
rata
subs
p. ly
rata
] U
nige
ne
9797
_All
276
241
102.
8911
12
0 45
.478
2 -1
.177
9 gi
|528
3967
6|db
j|BA
D52
003.
1|
[Dia
nthu
s car
yoph
yllu
s]
O-m
ethy
ltran
sfer
ase,
O
MT
Uni
gene
62
137_
All
270
1 0.
4364
44
17
.045
9 5.
2876
gi
|663
0734
|emb|
CAB
6421
7.1|
[A
rabi
dops
is th
alia
na]
Uni
gene
52
342_
All
330
1 0.
3571
25
7.
9242
4.
4719
gi
|224
0696
29|re
f|XP_
0023
2638
8.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
49
313_
All
614
540
103.
6323
38
16
650.
086
2.64
92
gi|1
1546
5627
|ref|N
P_00
1056
413.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
4933
5_A
ll 63
9 43
8 80
.768
7 27
40
448.
5187
2.
4733
gi
|663
0734
|emb|
CAB
6421
7.1|
[A
rabi
dops
is th
alia
na]
Uni
gene
28
478_
All
693
32
5.44
11
173
26.1
122
2.26
28
gi|4
7900
734|
gb|A
AT3
9306
.1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
3367
4_A
ll 27
5 21
8.
9982
63
23
.962
9 1.
4131
gi
|228
4804
64|g
b|A
CQ
4189
3.1|
[P
runu
s mum
e]
isof
lavo
ne
redu
ctas
e,
IFR
Uni
gene
30
811_
All
323
831
303.
1575
45
9 14
8.64
18
-1.0
282
gi|1
4934
9541
|gb|
AB
R24
115.
1|
[Viti
s vin
ifera
] U
nige
ne
2330
5_A
ll 34
0 33
1 11
4.71
46
69
21.2
276
-2.4
34
gi|1
2306
14|g
b|A
AB
6772
9.1|
[Lup
inus
alb
us]
Uni
gene
67
93_A
ll 43
3 81
22
.042
8 33
7.
9718
-1
.467
3 p|
P525
81|
[Lup
inus
alb
us]
Uni
gene
10
289_
All
550
3712
79
5.27
09
1460
27
7.66
49
-1.5
181
gi|7
6559
894|
tpe|
CAI5
6334
.1|
[V
itis v
inife
ra]
Uni
gene
64
845_
All
525
1635
36
6.96
8 86
5 17
2.34
06
-1.0
904
sp|P
5257
7|
[Ara
bido
psis
thal
iana
]
Gen
e na
me
Gen
e ID
G
ene
Len
gth
C21
_raw
read
s (8
4865
31)
C21
_RPK
M
T43
_raw
read
s (9
5602
48)
T43
_RPK
M
log2
(T43
_RPK
M
/C21
_RPK
M)
Ann
otat
ion
Dih
ydro
flavo
nol
-4-r
educ
tase
, D
FR
Uni
gene
15
73_A
ll 98
9 11
5 13
.701
6 60
6.
3458
-1
.110
5 gi
|765
5989
4|tp
e|CA
I563
34.1
| [O
ryza
sativ
a Ja
poni
ca G
roup
] U
nige
ne
6323
_All
365
70
22.5
983
19
5.44
49
-2.0
532
gi|1
7084
24|sp
|P52
581.
1|
[Jat
roph
a cu
rcas
] U
nige
ne
2168
8_A
ll 70
6 12
93
215.
8061
55
6 82
.376
-1
.389
4 gi
|116
0779
90|d
bj|B
AF3
4846
.1|
[Sol
anum
dem
issu
m]
Uni
gene
43
60_A
ll 49
6 36
2 85
.999
7 17
4 36
.694
3 -1
.228
8 gi
|765
5989
4|tp
e|CA
I563
34.1
| [C
amel
lia o
leife
ra]
leuc
oant
hocy
ani
din
diox
ygen
ase,
LD
OX
Uni
gene
38
112_
All
509
28
6.48
2 22
4.
521
-0.5
198
gi|2
0260
150|
gb|A
AM
1297
3.1|
[A
rabi
dops
is th
alia
na]
Uni
gene
24
841_
All
549
14
3.00
49
470
89.5
481
4.89
73
gi|2
9780
6577
|ref|X
P_00
2871
172.
1|
[Ara
bido
psis
lyra
ta su
bsp.
lyra
ta]
Uni
gene
26
243_
All
473
28
6.97
54
12
2.65
37
-1.3
943
gi|1
7695
92|g
b|A
AB
3999
5.1|
[D
iant
hus c
aryo
phyl
lus]
Cyt
ochr
ome
P450
, C
YP4
50
Uni
gene
50
151_
All
427
5 1.
3798
56
13
.718
3.
3135
gi
|222
8468
37|g
b|EE
E843
84.1
| [P
opul
us tr
icho
carp
a]
Uni
gene
30
27_A
ll 83
3 18
2.
5462
15
3 19
.212
2 2.
9156
gi
|224
0716
32|re
f|XP_
0023
0354
6.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
32
892_
All
339
17
5.90
91
119
36.7
179
2.63
55
gi|4
6359
653|
dbj|B
AD
1533
1.1|
[P
anax
gin
seng
] U
nige
ne
2752
7_A
ll 15
78
83
6.19
78
522
34.6
015
2.48
1 gi
|224
0716
32|re
f|XP_
0023
0354
6.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
96
96_A
ll 61
5 29
5.
5564
15
5 26
.362
6 2.
2463
gi
|224
0586
39|re
f|XP_
0022
9957
9.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
25
799_
All
1548
10
3 7.
8404
40
6 27
.433
8 1.
807
gi|4
6359
653|
dbj|B
AD
1533
1.1|
[P
anax
gin
seng
] U
nige
ne
1504
6_A
ll 16
83
71
4.97
1 27
0 16
.780
7 1.
7552
gi
|170
6591
6|em
b|CA
C80
883.
1|
[Cat
hara
nthu
s ros
eus]
Gen
e na
me
Gen
e ID
G
ene
Len
gth
C21
_raw
read
s (8
4865
31)
C21
_RP
KM
T
43_r
awre
ads
(956
0248
) T
43_R
PKM
lo
g2(T
43_R
PK
M/C
21_R
PKM
) A
nnot
atio
n
Cyt
ochr
ome
P450
, C
YP4
50
Uni
gene
25
113_
All
564
337
70.4
078
1269
23
5.34
95
1.74
1 gi
|224
1373
06|re
f|XP_
0023
2709
3.1|
[P
opul
us tr
icho
carp
a]
Uni
gene
32
915_
All
385
15
4.59
09
52
14.1
278
1.62
17
gi|2
2405
8639
|ref|X
P_00
2299
579.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
2178
0_A
ll 78
3 21
3.
1603
69
9.
2176
1.
5443
gi
|850
0171
9|gb
|AB
C68
413.
1|
[Gly
cine
max
] U
nige
ne
1405
3_A
ll 18
21
288
18.6
36
834
47.9
057
1.36
21
gi|4
2569
342|
ref|N
P_18
0199
.3|
[P
opul
us tr
icho
carp
a]
Uni
gene
28
321_
All
1867
65
1 41
.087
2 17
46
97.8
207
1.25
15
gi|2
2406
3931
|ref|X
P_00
2301
307.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
1582
4_A
ll 41
2 52
14
.872
2 12
2 30
.973
7 1.
0584
gi
|850
0170
9|gb
|AB
C68
408.
1|
[Ory
za sa
tiva
Japo
nica
Gro
up]
Uni
gene
30
263_
All
534
31
6.84
05
123
24.0
932
1.81
65
gi|2
2405
8639
|ref|X
P_00
2299
579.
1|
[Pop
ulus
tric
hoca
rpa]
U
nige
ne
5613
3_A
ll 39
3 2
0.59
97
22
5.85
55
3.28
75
gi|7
8183
422|
dbj|B
AE4
7005
.1|
[Cat
hara
nthu
s ros
eus]
U
nige
ne
2579
9_A
ll 15
48
103
7.84
04
406
27.4
338
1.80
7 gi
|224
1251
06|re
f|XP_
0023
2989
5.1|
[P
anax
gin
seng
]