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SIO295S/295LS INTRODUCTION TO

MARINE BIODIVERSITY, CONSERVATION, & GLOBAL CHANGE Summer 2016

Goals

(1) To provide students with an introduction to several fields of study in order to help

students with diverse educational backgrounds establish a fundamental skill set; (2) To ensure that all students have a basic understanding of marine biodiversity,

conservation, and global change through the lenses of natural sciences, economics, business, governance, ethics, and communication; and

(3) To provide an integrated course to demonstrate the linkages among various disciplines and the need for interdisciplinary approaches to address global change, marine biodiversity, and conservation.

Approach The summer course is an intense 9-week program that includes lectures, labs, discussions, field trips, and exercises. It includes university faculty members, practitioners, and other experts. Most topics will be taught in a discipline-specific manner (e.g., economics, biodiversity, governance, etc.). To enable students to apply discipline-specific topics to an interdisciplinary problem, student will be required to participate in an interdisciplinary summer project. Participation We expect meaningful participation from all students, including participating in class discussions, as well as completing individual and group assignments. Attendance is mandatory. Class will usually run from 9 am – 4 pm. However, on some days class will start early or finish late as noted in the syllabus. Also we have required course work, cruises, and field trips with some scheduled over weekends. These are mandatory activities, not elective. Please plan accordingly. Additional information about participation can be found in the SIO Summer Projects and Grading Handout provided during orientation. Assignments Students will have interdisciplinary and discipline-specific assignments that focus on the summer project theme. For each assignment, the instructors will evaluate both the students’ ability to communicate effectively and their substantive knowledge of the material covered. Part of the course will include a project that spans the length of the summer. The project provides a mechanism for students to apply what they have learned in an interdisciplinary fashion. Students will work individually and in groups. The assignments serve three purposes: (1) they provide the instructors a mechanism to evaluate individual students; (2) they provide students a way to apply what they have learned to a specific problem; and (3) they provide students an opportunity to use different communications skills. Additional information about specific assignments can be found in the SIO Summer Projects and Grading Handout. Summer Project Theme - Seafood Security & the California Current Students will focus on issues related to the California Current large marine ecosystem, considering the ecological, economic and social factors that influence the health and function of these systems and how this relates to food security through wild fisheries and aquaculture

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General Course Notes & Preliminary Reading This course is to be taken for a letter grade. Required reading Economics: A very short introduction By: Partha Dasgupta Made to Stick: Why some ideas survive and others die By: Chip & Dan Heath American Catch: The Fight for Our Local Seafood By: Paul Greenberg Merchants of Doubt by Naomi Oreskes Assigned Readings Readings are available on the thumb drive in the syllabus binder. Additional readings will be posted in TritonEd.ucsd.edu Course Evaluation Weekly course evaluations are required and should be considered an assignment due every MONDAY by 9:00 a.m. The information is used to determine how best to improve the course the following year. All evaluations are anonymous. We encourage you to voice your opinion and provide constructive and respectful criticism. Evaluations are conducted through “Survey Monkey.” In addition you will receive an email request from the university at the end of the course to complete an on-line evaluation. This will include the overall course and key faculty evaluations (Sandin, Rouse, Smith) that are used by the institution for academic review. Location Lectures are held in 4500 Hubbs Hall. Labs are held in 3300 Hubbs Hall unless otherwise instructed. Breaks In general, 20-minute breaks are scheduled in the morning and afternoon with a one-hour lunch break, typically 12:00 - 1:00 pm. If the instructor fails to break, please remind him or her.

• Morning breaks are 10:20 – 10:40 a.m. • Afternoon breaks are 2:20 - 2:40 p.m.

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ORIENTATION JUNE 22 - 24 4500 Hubbs Hall Speakers: Guy Masters, tmasters@ucsd.edu, x42836 Lisa Levin, llevin@ucsd.edu, x 43579 Wolfgang Hastert, wolfganghastert@gmail.com Bethany Harris, beharris@ucsd.edu, x27496 Greg Rouse, grouse@ucsd.edu, x47973 Sarah Mesnick, sarah.mesnick@noaa.gov, 858-546-7148 Phaedra Doukakis, pdoukakis@ucsd.edu, x45022 Mon 20 June MAS-MBC Students only - Eckart Building - Sea Cave room 8:30 - 9:30 Office Tour 9:30 - 10:00 Scripps IT - Robyn Chadwick 10:00 - 11:00 Student Health Insurance Program - Cindy McDaniel 11:00 - 12:00 Financial Aid - Yvonne Borrego LUNCH Provided - SEA CAVE 13:00 - 15:00 Tour of UCSD - Student Services Center (2:pm for IDs) Tue. 21 June MAS Students Only - Eckart Building - Sea Cave Room 9:00 - 12:00 Academic Overview - Phaedra Doukakis LUNCH 1:00 - 2:00 CMBC Research Labs and Activities - Lisa Levin Wed 22 June All Students - 4500 Hubbs Hall 09:00 -09:20 Welcome to SIO -Research Overview Guy Masters, SIO Deputy Director of Research 09:20 - 10:00 Introductions 10:00 - 10:10 CMBC Welcome & Overview - Lisa Levin 10:10 - 10:20 MAS-MBC Program orientation - Phaedra Doukakis & Jane Weinzeril 10:30 - 11:30 Introduction to the course, content & organization - Phaedra Doukakis 11:30 - 13:00 NEW PIER Students - UCSD tour -ID cards (12:00 at Student Services Center) - Cliff Kapono LUNCH 13:30 - 15:00 Tour of SIO –Kaitlyn Lowder & Jennifer Le 15:00 - 16:00 SIO PIER students meet with advisor for office space assignment Thurs 23 June 09:00 - 10:00 Individual and Group Project Overview - Phaedra Doukakis 10:00 - 11:00 Made to Stick Assignment (Due June 29 & July 29) - Phaedra Doukakis 11:00 - 12:00 Lecture/Discussion: How to Read a Science Paper - Phaedra Doukakis LUNCH 13:00 - 13:45 Accessing Library Resources - Bethany Harris 14:00 - 16:00 Lecture: Story Telling and digital content - Wolfgang Hastert Fri 24 June 12:30 - 13:00 Local tips from Course Assistant - Yassir Eddebbar 13:00 - 14:20 Introductory Lecture: The Tree of Life - Greg Rouse 14:40 - 16:00 Introductory Lecture: Sustainable Fisheries - Sarah Mesnick 16:00 - 17:30 Welcome Happy Hour w/potential mentors - CUPS

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READINGS ORIENTATION

Papers for Made to Stick Assignment

CA Current Kelp Forests 1. Parnell et al (2006) Marine Reserve Design: Optimal Size, Habitats, Species Affinities, Diversity, and Ocean Microclimate. Ecological Applications, 16 (3): 945-962 2. Tegner & Dayton (2000). Ecosystem Effects of Fishing in Kelp Forest Communities. ICES Journal of Marine Science, 57:579-589 CA Current Pelagic Environment 3. Koslow (2013) Fish assemblages in the Southern California Current: Relationship with Climate, 1951-2008. Fisheries Oceanography. 22(3): 207-219 4. Lindegren et al (2013) Climate, Fishing and Fluctuations of Sardine and Anchovy in the California Current. PNAS, 110 (33): 13672-13677 CA current fisheries and aquaculture 5. Halpern, B. S. et al (2009), Mapping cumulative human impacts to California Current marine ecosystems. Conservation Letters, 2: 138–148. doi: 10.1111/j.1755-263X.2009.00058.x Food security and the oceans 6. McClanahan T, Allison E.H. and Cinner J.E. 2013. Managing fisheries for human and food security. Fish and Fisheries 16:78-103. 7. Garcia, S.M. and Rosenberg, A.A. 2010. Food security and marine capture fisheries: characteristics, trends, drivers and future perspectives. Phil. Trans. R. Soc. B 2010 365, 2869-2880. DOI: 10.1098/rstb.2010.0171

June 24

NSF Report. The value of knowing the Tree of Life. 1-12 Tree of Life diagram (look closely) Hug, L.A. et al. 2016. A new view of the tree of life. Nature microbiology 1: 1-6

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WEEK 1 JUNE 27 - JULY 1 ECOLOGY & CONSERVATION Instructors: Stuart Sandin, ssandin@ucsd.edu, x 44150

Christian McDonald, cmcdonald@ucsd.edu, x 42022 Ryan Hechinger, rhechinger@ucsd.edu, x23788

Guests: Nancy Knowlton, Smithsonian Institution Jeremy Jackson, SIO Emeritus Professor Stephen Bennett, Riskpulse, Steve.Bennett@riskpulse.com Forest Rohwer, frohwer@sunstroke.sdsu.edu

Course coordinator: Katie Cramer, Katie.cramer@gmail.com, x21868 Course Assistant: Yassir Eddebbar, yeddebba@ucsd.edu Mon 27 June 08:30 - 09:00 Introduction - Course Coordinator - Katie Cramer 09:00 - 10:20 Lecture (Jackson) Caribbean Reefs: a history 10:40 – 12:00 Lecture (Knowlton) Ocean optimism LUNCH BREAK 13:00 – 14:20 Lecture (Sandin) Ocean Ecosystems 14:40 – 16:00 Lecture/Discussion (Sandin) Scientific Uncertainty Tues 28 June MADE TO STICK 09:00 - 12:00 Lecture (Bennett) Made to Stick Principles LUNCH BREAK 13:00 – 16:00 Exercise (Bennett) Made to Stick - Examples, Discussion & Practice Wed 29 June ECOLOGY & CONSERVATION 09:00 - 10:20 Lecture (Sandin) Status of Marine fisheries 10:40- 12:00 Lecture (Sandin) Biodiversity and Ecosystem Function LUNCH BREAK 13:00 - 15:00 MADE TO STICK PRESENTATIONS #1 15:20 - 16:00 Discussion (Bennett/Sandin/Cramer)

Thurs 30 June ECOLOGY & CONSERVATION 09:00 - 10:20 Lecture (Sandin) Species interactions 10:40 - 12:00 Lecture (Hechinger) How parasites rule the world LUNCH BREAK 13:00 - 13:15 Microscope Responsibility - Orna Cook 13:15 – 16:00 Lecture/Lab (Rohwer) How microbes (especially phage) rule the world Friday 1 July ECOLOGY & CONSERVATION 09:00 - 10:20 Lecture (Sandin) Chemical pollution in the sea 10:40 - 12:00 Lecture (Sandin) Biological pollution in the sea LUNCH BREAK 13:00 - 14:00 Swim Assessment - West Canyon View pool (McDonald/Sandin/Eddebbar) Reservation 45015

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READINGS WEEK 1 JUNE 27 – JULY 1 ECOLOGY & CONSERVATION

Mon, June 27 Jackson, J.B.C. 2008. Ecological extinction and evolution in the brave new ocean. Proceedings of the National Academy of Sciences 105:11458-11465.

Harwood, J., and K. Stokes. 2003. Coping with uncertainty in ecological advice: lessons from fisheries. Trends in Ecology & Evolution 18:617-622. David Michaels. 2005. Doubt Is Their Product. Scientific American. 96-101

Tues. June 28 Made to Stick Overview Making your presentation Stick Wed, June 29 Worm, B. et al. 2006. Impacts of biodiversity loss on ocean ecosystem services. Science 314:787-790.

Thurs. June 30 Estes JA, et al. 2011. Trophic downgrading of Planet Earth. Science 333:301-306 Kuris, A. M., R. F. Hechinger, J. C. Shaw, K. L. Whitney, L. Aguirre-Macedo, C. A. Boch, A. P. Dobson, E. J. Dunham, B. L. Fredensborg, and T. C. Huspeni. 2008. Ecosystem energetic implications of parasite and free-living biomass in three estuaries. Nature 454:515-518. Rohwer, F., and R. V. Thurber. 2009. Viruses manipulate the marine environment. Nature 459:207-212. Friday, July 1 Carlton, J.T. and J.B Geller. 1993. Ecological roulette: the global transport of nonindigenous marine organisms. Science 261 No. 5117: 78-82 Molnar, J. L., R. L. Gamboa, C. Revenga, et al. 2008. Assessing the global threat of invasive species to marine biodiversity. Frontiers in Ecology and the Environment 6: 485-492 Bonito, L.T., A. Hamdoun, S.A. Sandin. 2016. Evaluation of the global impacts of mitigation on persistent, bioaccumulative and toxic pollutants in marine fish. PeerJ 4:e1573.

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WEEK 2 JULY 4 - 9 ECOSYSTEMS / BIODIVERSITY Instructors Stuart Sandin, ssandin@ucsd.edu, x44150 Greg Rouse, grouse@ucsd.edu, x47973 Mark Ohman, mohman@ucsd.edu, x42754 Lisa Ballance, lisa.ballance@noaa.gov, 858-546-7173 Octavio Aburto, maburto@ucsd.edu, x41043 Isabelle Kay, ikay@ucsd.edu, 858-534-2077 Emily Kelly, elkelly@ucsd.edu Guests: Christine Whitcraft, Christine.whitcraft@csulb.edu

Lara Hansen, EcoAdapt, lara@ecoadapt.org Course coordinator: Katie Cramer, Katie.cramer@gmail.com, x21868 Course Assistant: Yassir Eddebbar, yeddebba@ucsd.edu Monday 4 July INDEPENDENCE DAY HOLIDAY Tues 5 July ECOSYSTEMS -Wetlands (Whitcraft) 09:00 - 10:20 Wetland and coastal ecosystem and conservation 10:40 - 12:00 Restoration approaches, mitigation LUNCH BREAK 13:00 –13:20 BUS TO MISSION BAY (Staging P016 - Goldfield Stage Confirm 42150) 13:30 - 15:30 Participate in Restoration activities - Isabelle Kay 15:30 - 16:00 Homework Assignment Data Analysis /Bus Home Preparation for July 5: Be prepared to be hot or cold and muddy. Closed toed shoes are required; long pants and sleeves to roll down, hat, sunscreen are recommended. Please bring water. Wed 6 July ECOSYSTEMS 09:00 - 10:20 Review wetlands assignment (Whitcraft) 10:40 - 12:00 Lecture (Kelly) - Coral reef ecosystems LUNCH BREAK 13:00 - 16:00 Laboratory (Kelly) Decision making on coral reefs – balancing interests Thurs 7 July ADAPTATION (Hansen) - Preparation required-next page 09:00 - 10:20 Adaptation and Resilience 10:40 – 12:00 Conservation Planning LUNCH BREAK 13:00 – 14:20 Adaptation Brainstorming 14:40 – 16:00 Class Exercise Friday 8 July BIODIVERSITY –Prep lectures for RV Sproul 09:00 - 10:20 Lecture (Ohman) Pelagic Diversity 10:40 – 12:00 Lecture (Ballance) Tetrapod diversity LUNCH BREAK 13:00 – 14:20 Lecture (Aburto) Diversity of Fishes/Major Groups of Fishes 14:20 - 16:00 Lecture (Rouse) Measuring and Understanding Diversity - Greg (This will include experimental design and exercises for Saturday) Sat 9 July All day at sea on the RV SPROUL UCSD SHUTTLE RESERVATION 2460 (858-534-6282) Staging area P016/ Departure at 5:30 a.m. (UCSD bus) return pickup at 10:00 p.m. Phil Zerofski, Greg Rouse, Jon Shurin, Lee Hagey,Josefin Stiller, Chiara Ramano. CLOSED-TOE SHOES REQUIRED – YOU WILL NOT BE ALLOWED ON BOARD WITHOUT THEM. Government issued photo ID is required. Be prepared to be hot or cold, wet, thirsty and seasick. Please take appropriate precautions. Bring hat, sunscreen, a folding chair, binoculars and camera (if you have them), and plenty of enthusiasm.

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READINGS WEEK 2 JULY 4 - 9 ECOSYSTEMS/BIODIVERSITY

Tues July 5 Pennings S.C. and M.D. Bertness. Salt Marsh Communities. Chapter 11 in Marine Communities. Wed July 6 Pandolfi, J. M., R. H. Bradbury, E. Sala, T. P. Hughes, K. A. Bjorndal, R. G. Cooke, D. McArdle, L. McClenachan, M. J. H. Newman, G. Paredes, R. R. Warner, and J. B. C. Jackson. 2003. Global trajectories of the long-term decline of coral reef ecosystems. Science 301:955-958.

Moberg, F., and C. Folke. 1999. Ecological goods and services of coral reef ecosystems. Ecological Economics 29:215-233.

Thurs July 7 Preparation for Thurs 7 July How do you make conservation and management climate savvy? We'll spend the afternoon consider how climate change will affect Seafood Security & the California Current region, and, more importantly, developing approaches to reduce that vulnerability through. To do this, bring with you to class a conservation plan or management challenge that you care about, related to seafood security, sustainable fisheries, or the California Current. We will be working in 5-6 small groups that will each agree on a common topic for their group to explore collectively, so feel free to gather a group of classmates and bring the same topic so you can be a small group. To support this group exercise, bring maps, brief descriptions (bulleted key goals or activities being undertaking), pictures, whatever you feel would be valuable information for describing or exploring the conservation challenge. The goal is to make the work we do in the afternoon as relevant to your interests and career (academic and professional) as possible. You will not have to formally present any of the homework, but it will be useful for the afternoon exercise where you will work to develop a climate change "adaptation" strategy as a group and give a short presentation to the rest of the class. Useful reading: Hansen L.J. and J.R. Hoffman. 2011. Buying Time: The Tao of Adaptation. Chapter 4 in Climate

Savvy: Adapting Conservation and Resource Management to a Changing World. Island Press. Hansen, L.J. and J.R. Hoffman. 2011. Regulating Harvest in a Changing World. Chapter 13 in

Climate Savvy: Adapting Conservation and Resource Management to a Changing World. Island Press.

Hansen, L.J., J.R. Hoffman, C. Drews and E.E. Mielbrecht. 2010. Designing Climate-Smart Conservation: Guidance and Case Studies. Conservation Biology. 24:63-68.

Howard et al. 2013 Oceans and Marine Resources in a Changing Climate. Oceanography and Marine Biology: An Annual Review. 51:71-192. (a.k.a. National Climate Assessment Ocean and Marine Resource Technical Input,

MPA Monitoring Enterprise. 2012. Monitoring Climate Effects in Temperate Marine Ecosystems: A Test Case Using California’s MPAs

Fri July 8 Cetacean Ecology AND Pinnipedia, overview in Perrin, W.R., B. Würsig, and J.G.M. Thewissen.

2009. Encyclopedia of marine mammals, second edition. Academic Press. Schreiber, E.A. and J. Burger. 2002. Biology of marine birds. Chapter 3. CRC Press. Mora, C., Tittensor, D. P., Adl, S., Simpson, A. G. B. & Worm, B. 2011. How Many Species Are There on Earth and in the Ocean? PLOS Biology 9, e1001127. (doi:10.1371/journal.pbio.1001127) Appeltans, W. et al. 2012. The Magnitude of Global Marine Species Diversity. Current Biology 22, 2189–2202. (doi:10.1016/j.cub.2012.09.036)

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WEEK 3 JULY 11 - 15 ECOSYSTEMS/ BIODIVERSITY/ETHICS Instructors Greg Rouse, grouse@ucsd.edu, x47973 Craig Callender, ccallender@ucsd.edu, x21655 Eric Allen, eallen@ucsd.edu, x42570 David Kline, dkline@ucsd.edu, 48947 Harim Cha, hacha@ucsd.edu, x22818 Lindsay Sala, lsala@ucsd.edu, x42071 Ben Frable, bfrable@ucsd.edu, x42199 Thiago Lima, thiago.ghirello.lima@gmail.com Paul Dayton, pdayton@ucsd.edu, x46740 Guests: Jay Odenbaugh, jay@lclark.edu Course coordinator: Katie Cramer, Katie.cramer@gmail.com, x21868 Course Assistant: Yassir Eddebbar, yeddebba@ucsd.edu Isla Globus-Harris, iglobush@ucsd.edu Mon 11 July ECOSYSTEMS 09:00 - 10:20 Discussion (Rouse) Review of Sproul data & analysis 10:40 - 12:00 Lecture (Rouse) Deep Sea Ecosystems & Conservation LUNCH BREAK Preparation for Economics Week 13:00 - 14:20 MATH REVIEW - Isla Globus-Harris 14:40 - 16:00 Math Review - Exercises /Assignment for Econ Week Tues 12 July ECOSYSTEMS /BIODIVERSITY 09:00 - 10:20 Lecture (Rouse) Invertebrate Diversity 10:40 – 12:00 Lecture (Dayton) Antarctic Ecosystems LUNCH BREAK 13:00 - 16:00 Lab (Rouse) Invertebrates Wed 13 July BIODIVERSITY 09:00 - 10:20 Lecture (Lima) Molecular methods/tools in Ecology 10:40 – 12:00 Lecture (Allen) Marine Microbe Diversity LUNCH BREAK 13:00 – 14:20 FIELD TRIP - COLLECTIONS TOUR (Rouse, Sala, Cha, Frable) 14:40 - 16:00 AQUARIUM TOUR (Rouse, Frable,Kline) Thurs 14 July ETHICS (Callender & Odenbaugh) 09:00 - 10:20 Introduction to Ethics 10:40 – 12:00 Environmental Ethics and Biodiversity LUNCH BREAK 13:00 – 14:20 Philosophy of science, Pseudo-Science, Junk Science 14:40 – 16:00 Scientific Uncertainty and Science Communication Friday 15 July ETHICS (Callender & Odenbaugh) 09:00 - 10:20 Property Rights and the Tragedy of the Commons 10:40 – 12:00 The Ethics of Seafood LUNCH BREAK 13:00 – 14:20 Research Ethics 14:40 - 16:00 The Goals of Conservation

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READINGS WEEK 3 JULY 11 - 15 BIODIVERSITY/ETHICS Mon July 11 Ramirez, E.R et al. 2010. Deep, diverse and definitely different: unique attributes of the world's largest ecosystem. Biogeosciences. 7, 2851-2899 Tues July 12 Dunn C.W., Giribet G., Edgecombe G.D., Hejnol A. 2014. Animal Phylogeny and Its Evolutionary

Implications. Annu Rev Ecol Evol S. 45:371–395. Wed July 13 Burton, R. 2009. Molecular Markers, Natural History, and Conservation of Marine Animals. Bioscience 59: 831- 840. Bowler C, Karl DM, Colwell RR (2009) Microbial oceanography in a sea of opportunity. Nature 459:180-184. Azam F, Malfatti F (2007) Microbial structuring of marine ecosystems. Nat Rev Microbiol 5:782- 791.

Thurs, July 14 Background: Oreskes and Conway, “What’s Bad Science? Who Decides? The Fight Over Second- Hand Smoke, in Merchants of Doubt, 136-168. Odenbaugh, Jay 2015. “On the Contrary: How to Think About Climate Skepticism” Sober, Elliot. 1986. "Philosophical Problem for Environmentalism," in The Preservation of Species. Ed. B. Norton (Princeton University Press) Odenbaugh, Jay. 2015. Protecting Biodiversity and Moral Psychology; or Why Philosophers are asking the wrong questions Resnick. 2000. A Pragmatic Approach to the Demarcation Problem. Stud.Hist. Phil Sci., 31 (2): 249-267 Michaels and Monforton. 2005. Manufacturing Uncertainty: Contested Science and the Protection of the Public’s Health and Environment. American Journal of Public Health. 95(S1) 39:48

URL to visit: The Headlines Matching Game: Causation vs Correlation http://jfmueller.faculty.noctrl.edu/100/correlation_or_causation.htm “The Importance of Communicating Scientific Uncertainty” http://blogs.mprnews.org/updraft/2016/04/the-importance-of-communicating-scientific

uncertainty/. Fri, July 15 Hardin, Garrett. 1968. Tragedy of the Commons. Science 162(3859), 1243-1248 Railton, Peter. "Locke, stock, and peril: Natural property rights, pollution, risk" Lam & Pauly. 2010. “Who is Right to Fish? Evolving a Social Contract for Fisheries” Ecology and Society 15(3): 16 http://www.ecologyandsociety.org/vol15/iss3/art16/ Lam. 2013. “Comparing the Ethics of Capture Fisheries and Aquaculture" in The ethics of consumption: The citizen, the market and the law. Wageningen Academic Publishers TJ Pitcher and ME Lam. 2010. Supplement: Fishful thinking: rhetoric, reality, and the sea before us. Ecology and Society 15 (2) 12 On Being a Scientist: A Guide to Responsible Conduct in Research National Academies ESA Code of Ethics http://www.esa.org/esa/about/governance/esa-code-of-ethics/ Odenbaugh 2012. “Advocacy, Ecology and Environmental Ethics." Nature Education Knowledge 3(10):8 Soulé, M. E. (1985). What is conservation biology? BioScience, 727–734. Kareiva, P. and M. Marvier (2012). What is conservation science? BioScience 62(11), 962–969. Doak, D. F., V. J. Bakker, B. E. Goldstein, and B. Hale (2014). What is the future of conservation? Trends in ecology & evolution 29(2), 77–81. VISIT URL: Marine Rewilding: http://yalikedags.southernfriedscience.com/marine-rewilding/

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WEEK 4 JULY 18 - 22 COMMUNICATION

Instructors: Wolfgang Hastert, wolfganghastert@gmail.com Caitlin Scully, cscully@ucsd.edu, x45037 Cari Paulenich, cpaulenich@ucsd.edu, x21810 Jennifer Smith, smithj@ucsd.edu, x60803 Greg Rouse, grouse@ucsd.edu, x47973 Katie Cramer, Katie.cramer@gmail.com

Guests: Jeff Crooks, jacrooks@yahoo.com Course coordinator: Katie Cramer, Katie.cramer@gmail.com, x21868 Course Assistant: Yassir Eddebbar, yeddebba@ucsd.edu Mon 18 July 09:00 - 12:00 FIELD TRIP: Explore diversity of La Jolla Cove* (Rouse, Smith, Eddebbar) LUNCH BREAK MARKETING - COMMUNICATION - Aquarium Conference Room 13:00 – 14:20 Lecture (Scully) Marketing 14:40 – 16:00 Lecture (Paulenich) Communicating Science to the Public * Car Pool to Cove - Note location may change to the SIO Pier depending on pollution and water conditions. Tuesday 19 July COMMUNICATION 09:00 - 12:00 Film Review and Discussion (Hastert) LUNCH BREAK GEOSCIENCE 13:00 - 14:20 Lecture (Cramer) a Brief History of Life 14:40 - 16:00 Lab (Cramer) History of Life and Fossils Wed 20 July COMMUNICATION 09:00 - 10:20 Exercise (Hastert) - Story Boarding 10:40 – 12:00 Discussion (Hastert) Effective Video and Blog Assessment LUNCH BREAK 13:00 – 16:00 Filming on your own - any coastal or fishery issue Thurs 21 July COMMUNICATION 09:00 - 12:00 Exercise (Hastert) Media Production LUNCH BREAK 13:00 – 16:00 Exercise (Hastert) Media Production 16:00 - 17:00 Student Film presentations, review & discussion Fri 22 July FIELD TRIP - Staging area P016 09:00 - 12:00 FIELD TRIP (Crooks)- Tijuana River National Estuary Reserve Border infrastructure and impacts on estuary LUNCH BREAK Please bring your lunch or a snack 13:00 - 15:00 Observations at the Estuary 15:00 - 16:00 Return to SIO

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READINGS WEEK 4 JULY 18 - 22 COMMUNICATION

July 19 Norris et al. (2013) Marine Ecosystem Responses to Cenozoic Global Change. Science 2, vol 341(6145): 492-498

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WEEK 5 JULY 25 - 29 OCEANOGRAPHY/COMMUNICATIONS Instructors: Jeff Severinghaus, jseveringhaus@ucsd.edu, x22483 Peter Franks, pfranks@ucsd.edu, x47528 Andreas Andersson, aandersson@ucsd.edu, x22486 Sam Iacobellis, siacobellis@ucsd.edu, x43126 Sarah Giddings, sgiddings@ucsd.edu, x45103 Falk Feddersen, ffeddersen@ucsd.edu, x44345 Noah Ben Aderet, nbenader@ucsd.edu Guests: Steve Bennett, Riskpulse, Steve.Bennett@riskpulse.com Rob Wilder, rob@h2fuelcells.org Course coordinator: Katie Cramer, Katie.cramer@gmail.com, x21868 Course Assistant: Amy Van Cise, avancise@gmail.com Mon 25 July OCEANOGRAPHY 07:00 - 11:00 FIELD TRIP - GEOLOGY OF TORREY PINES (Cramer) LUNCH BREAK 13:00 - 14:20 Lecture (Andersson) Marine Chemistry Basics 14:40 - 16:00 Lecture (Andersson) Ocean Acidification & Deoxygenation Tues 26 July OCEANOGRAPHY 09:00 - 10:20 Lecture (Franks) Primary Production 10:40 - 12:00 Lecture (Franks) Biological Pump LUNCH BREAK 13:00 – 14:20 Lecture/Discussion (Wilder) Sea Level Rise Wed 27 July OCEANOGRAPHY 09:00 - 10:20 Lecture (Severinghaus) Climate Change - The big picture 10:40 - 12:00 Lecture (Iacobellis) Oceans and Atmosphere LUNCH BREAK 13:00 – 15:00 Lecture/Lab (Giddings) Urban Tides - Citizen Science Thus 28 July OCEANOGRAPHY 09:00 - 10:20 Lecture (Giddings) Ocean Circulation/Tides/Current 10:40 – 12:00 Motion of Water & Waves (Fedderson) LUNCH BREAK 13:00 – 15:00 Lab (Fedderson): Observing Waves in Motion Friday 29 July COMMUNICATIONS 09:00 - 10:20 Made to Stick - Presentation #2 10-40 - 11:40 Made to Stick - Presentation #2 continued 11:40 - 12:00 (Bennett/Sandin/Cramer) Made to Stick discussion and wrap up LUNCH BREAK 13:00 - 15:00 PREPARATION FOR CATALINA - Fish & Algae Quiz (BenAderet & Smith)

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READINGS WEEK 5 JULY 25 -29 OCEANOGRAPHY

Mon. 25 July Doney, Scott C. et al. 2012. Climate Change Impacts on Marine Ecosystems. Annual Review of Marine Science 4: 11-37 Field, David B., et al. 2006. Planktonic Foraminifera of the California Current Reflect 20th Century Warming. Science Vol 311: 63-66

Tues 26 July Ducklow H.W. and Steinberg D.K. 2001. Upper Ocean Carbon Export and the Biological Pump. Oceanography. 14 (4):50 - 58 Passow, Uta and Carlson Craig A. 2012. The biological pump in a high CO2 world. Marine Ecology Progress Series. 470: 249-271 Lenton, T.M., et al. 2008. Tipping points in the Earth’s climate system. PNAS 105 (6) 1786-1793. PALSEA (PALeo SEA Level working group). 2009. The sea-level conundrum: case studies from palaeo-archives. Journal of Quaternary Science 25(1): 19-25

Church J.A & White N.J. 2006. A 20th century acceleration in global sea-level rise. Geophys Res Let 33, L01602 Clark, Peter U. et al 2016. Consequences of twenty-first-century policy for multi-millennial climate and sea-level change. Nature Climate Change 6; 360-369

Wed. 27 July Schubert et al. 2006. The future oceans—warming up, rising high, turning sour. German Advisory Council on Global Change (WBGU) pp.1-123.

Rahmstorf, Stefan. 2002. Ocean circulation and climate during the past 120,000 years. Nature (419) 207-214

Pierce, D. W., Ed., 2011: California climate extremes workshop report. Scripps Institution of Oceanography. 32pp

Thurs 28 July

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WEEK 6 JULY 31 - AUG 5 ECOSYSTEM FIELD TRIP-CATALINA /BUSINESS Instructors: Jen Smith, smithj@ucsd.edu, x60803 Noah Ben-Aderet, nbenader@ucsd.edu Emily Kelly,elkelly@ucsd.edu Christian McDonald, cmcdonald@ucsd.edu, 42002 Maya Devries, mdevries@ucsd.edu Katie Baca-Motes, baca.katie@gmail.com Course Assistant: Amy Van Cise avancise@gmail.com Sun 31 July Staging Area: One Mira Mar 07:00 - 09:00 Car Pool to San Pedro (Southern California Marine Institute Terminal) 09:00 - 10:00 Load Ferry 10:00 - 11:00 Depart San Pedro to Two Harbors (CLOSED-TOED SHOES ARE MANDATORY) 11:00 - 12:00 Arrive & settle in at Wrigley Institute BREAKFAST (8 am), LUNCH (Noon) and DINNER (6pm) SERVED DAILY 13:00 – 14:00 Water safety & check out rules (McDonald) 14:00 – 17:00 Snorkel 19:00 - 21:00 Lecture (Ben-Aderet): species ID overview Mon 1 Aug 09:00 – 12:00 Snorkeling: Fisherman’s Cove (no take marine reserve) (find the most common species) 13:00 – 14:00 Lecture: Fish survey methods 14:00 - 17:00 Snorkeling: Fish survey 19:00 - 21:00 Lab (Smith) Seaweed & Invert ID & lab Tues 2 Aug 09:00 - 12:00 Kayaking: fishermen's cove: Plankton tow 13:00 - 14:00 Lecture: Benthic survey methods 14:00 - 17:00 Benthic surveys 17:00 - 18:00 Data Entry 19:00 - 21:00 Plankton tow off pier & Plankton Lab Wed 3 Aug 09:00 – 18:00 Independent project work & scavenger hunt 15:00 - 18:00 Lab time for independent project work 19:00 - 20:00 Presentation of scavenger hunt results 20:00 - 21:00 Pack Gear Thurs 4 Aug 08:30 – 11:00 Independent project presentations 11:00 - 12:00 Load Ferry 12:30 - 13:30 FERRY WILL DEPART PROMPTLY AT 12:30 to San Pedro 13:00 - 14:00 Unload 14:00 - 16:00 Car Pool to One Mira Mar Friday 5 Aug BUSINESS- NEGOTIATION (Baca-Motes) 09:00 - 10:20 Value Claiming 10:40 – 12:00 Simulations LUNCH BREAK NEGOTIATION - (Baca-Motes) 13:00 – 14:20 Value Creation 14:40 – 16:00 Simulations and analysis

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READINGS WEEK 6 JULY 31 – AUG 5 CATALINA/BUSINESS NO READING JULY 31 - AUG 4 August 5

Gilbert, Daniel. I'm O.K.,You're Biased. New York Times -OP-Ed. April 16, 2006

Additional reading will be provided in class.

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WEEK 7 AUGUST 8 - 12 ECONOMICS Instructors Mark Jacobsen, m3jacobsen@ucsd.edu, 642-3765 Dale Squires, dale.squires@noaa.gov, 546-7000 Joel Watson, jwatson@ucsd.edu, x46132 Richard Carson, rcarson@ucsd.edu, x22262 Guest: E.J. Milner-Gulland, Oxford, ej.milner-gulland@zoo.ox.ac.uk, x41614

Course Assistant: Amy VanCise, avancise@gmail.com Monday 8 Aug ECONOMICS - FISHERIES I 09:00 – 10:20 Lecture (Squires) Bioeconomic models I 10:40 – 12:00 Lecture (Squires) Bioeconomic models II LUNCH BREAK ECONOMICS - FISHERIES II 13:00 – 14:00 Discussion (Squires) Economics of Sustainable Fisheries 14:20 - 16:00 Fisheries Movie - End of the Line Tues 9 Aug ECONOMICS - ARTISANAL FISHERIES 09:00 - 10:20 Lecture (Squires) Artisanal Fisheries 10:40 – 12:00 Exercise (Squires) Economics of Conservation & Food Security LUNCH BREAK ECONOMICS – FOOD SECURITY AND APPLIED ECONOMICS 13:00 – 14:20 Exercise (Squires):Economics of Conservation & Food Security, Simulation 14:40 – 16:00 Lecture (GUEST - Milner-Gulland) Applied economics Wed 10 Aug ECONOMICS – ECONOMIC THEORY AND SIMULATIONS 09:00 - 10:20 Lecture (Watson) Fundamental Questions in Economics and the Environment 10:40 – 12:00 Exercise (Watson) Simulation, markets and efficiency LUNCH BREAK ECONOMICS - ECONOMIC THEORY AND SIMULATIONS 13:00 – 14:20 Lecture (Watson) Solutions to market failure 14:40 – 16:00 Discussion (Watson):Simulation and institutions Thurs 11Aug ECONOMICS – AGREEMENTS AND VALUATION 09:00 - 10:20 Lecture (Watson) Conservation agreements and theory 10:40 - 12:00 Lecture (Carson) Valuation LUNCH BREAK ECONOMICS - REGULATION AND POLICY 13:00 - 14:20 Discussion (Carson) Moving from Science to Efficient Policy Outcomes 14:40 - 16:00 Lecture (Jacobsen):Basics of Environmental Regulation Fri 12 Aug ECONOMICS – CLIMATE CHANGE 09:00 - 10:20 Lecture (Jacobsen) Climate Change and Policy 10:40 – 12:00 Lecture (Jacobsen) Cap & Trade LUNCH BREAK ECONOMICS – CAP & TRADE AND FUTURE POLICY 13:00 – 14:20 Exercise (Jacobsen) Cap & Trade Simulation 14:40 – 16:00 Discussion (Jacobsen): Future Climate and Energy Policy

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READINGS AUGUST 8 - 12 ECONOMICS

Mon 8 August Greenberg, Paul. American Catch: The Fight for Our Local Seafood Preassigned reading Costello C, Gerber L.R., Gaines, S. 2012. A market approach to saving the whales. Nature. Vol 481: 139-140 Tues 9 August Cinner, Joshua & Shankar Aswani, 2007. Integrating customary management into marine conservation. Biological Conservation. 140; 201-216 Wed 10 August Hardin, Garrett. 1968. The Tragedy of the Commons. Science 162:1243-1248 Keohane, Nathaniel and Sheila Olmstead. 2016. Markets and the Environment, Second Edition. Island Press: Washington DC. Pages 1-30 and 69-78. (Note: This book is required for Econ 281 in the fall; we will introduce a few sections during the summer course.) Thurs 11 August Fri 12 August The Pew Center on Global Climate Change. 2011. "Climate Change 101: Cap and Trade" Natural Resources Defense Council. 2014. "NRDC Summary Of EPA’s Clean Power Plan"

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WEEK 8 AUGUST 15 - 19 GOVERNANCE /BUSINESS Instructors: Vish Krishnan, vkrishnan@ucsd.edu, x21991 Guests: Kathryn Mengerink, Waitt Institute, mengerink@waittinstitute.org Erika Feller, TNC, efeller@tnc.org Kate Wing, KW. Consulting, kate@katewing.net Ryan Wulff, NOAA, ryan.wulff@noaa.gov Course Assistant: Amy Van Cise, avancise@gmail.com Mon 15 August GOVERNANCE 09:00 - 09:30 Lecture (Mengerink) Introductions, overview of governance week 09:30 - 10:20 Lecture (Mengerink) Legal primer (law and policy basics) 10:40 – 12:00 Lecture (Wing) MLPA and MLMA (fisheries management in California) LUNCH BREAK 13:00 – 14:20 Exercise (Wing) MLPA/MLMA 14:40 – 16:00 Exercise (Feller) Mock Hearing introduction and assignments Tues 16 August 09:00 - 10:20 Lecture (Mengerink) Federal fisheries management in the US 10:40 – 12:00 Exercise: Fisheries management LUNCH BREAK 13:00 – 14:20 Discussion (Wing/Feller) Fisheries data and confidentiality 14:40 – 16:00 Discussion (Feller) Mock Hearing Prep Wed 17 August 09:00 - 10:20 Lecture (Wulff/Mengerink) International Fisheries Management 10:40 – 12:00 Exercise (Mengerink/Wulff) Marine Mammals LUNCH BREAK 13:00 – 14:20 Discussion (Feller, Wulff, Wing) Careers in Governance 14:40 – 16:00 Discussion (Feller) Mock Hearing Prep Thurs 18 August 09:00 - 13:00 Mock Hearing: Oral Testimony (2 min per person) LUNCH BREAK NOTE: lunch is from 1:00 - 2:00 14:00 - 16:00 Discussion: What worked/What didn't Fri 19 August BUSINESS 09:00 - 10:20 Lecture (Krishnan) Conservation & Business 10:40 – 12:00 Lecture/Discussion (Krishnan) Strategy & Value LUNCH BREAK 13:00 – 14:20 Exercise (Krishnan) Value Chain Simulation 14:40 – 16:00 Discussion (Krishnan) Coordination & communication

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READINGS AUG 15 - 19 GOVERNANCE/BUSINESS Mon. Aug. 15 Steve Roady, How United States Environmental Laws Are Made, Implemented and Litigated A

Primer in Three Parts (2014).

U.S. Ocean Commission, Chapter 1: Setting the Stage, Appendix 6: Review of U.S. Ocean and Coastal Law, (pp 1-16).

National Ocean Policy Executive Order National Ocean Policy Implementation plan Tues. Aug 16 Summer Flounder stirs north-south climate change battle http://www.dailyclimate.org/tdc-newsroom/2014/06/summer-flounder-moves-north/ NRDC v. Daley, 209 F. 3d 747 (D.C. Cir. 2000) CLF v. Pritzker, 2014 U.S. Dist. LEXIS 46543 (D.D.C. April 4, 2014) Wed. Aug 17 Three simple rules for eating seafood - New York Times -June 14, 2015 Thurs. Aug 18 ICRW - Convention Text Cullis-Suzuki & Pauly (2010) Failing the high seas: A Global Evaluation of Regional Fisheries Management Organizations

Fri. Aug. 19 Friedman, Milton. The Social Responsibility of Business is to Increase its Profits, The New York Times Magazine, September 13, 1970. Copyright @ 1970 by The New York Times Company. Keenan, E. et al. (2014 - Working Paper) Driving Pro-environmental Choice

Preview these videos prior to class. Ray Anderson on the business logic of sustainability http://www.ted.com/talks/lang/en/ray_anderson_on_the_business_logic_of_sustainability.html John Doerr sees salvation and profit in greentech-http://www.ted.com/talks/john_doerr_sees_salvation_and_profit_in_greentech.html

For reference: Zaval, L. et al. 2014. How warm days increase belief in global warming. Nature.com Baca-Motes et al. 2013. Commitment and Behavior Change: Evidence from the Field. Journal of Consumer Research Laseler, T, Ocvhinnikov A, and Raz G. 2010. Reduce, Reuse, Recycle…or Rethink. Strategy and Business pages 1-7 Bonini & Oppenheim. 2008. Cultivating the Green Consumer. Stanford Social Innovation Review. Pages 56-61

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WEEK 9 AUGUST 22 - 25 PROJECT WORK /PRESENTATION Mon 22 Aug PROJECT WORK DAY Tues 23 Aug TENTATIVE - SEAFOOD SYMPOSIUM/Squid Fest - Scripps Seaside Forum 09:00 - 16:00 Schedule to be provided at a later date. Wed 24 Aug PROJECT WORK DAY 09:00 - 12:00 Project Work 14:00 – 16:00 DISCUSSION: Capstone Project ideas (MAS Students) -Phaedra Doukakis

Tara Whitty, David Kline, Andrew Johnson, Alfredo Giron Thus 25 Aug FINAL PROJECT PRESENTATIONS 09:00 - 12:00 Project presentations LUNCH BREAK 13:00 - 16:00 Project presentations 16:00 - 18:00 Class Party - T-29