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Supplementary Table 4. Overrepresented deepSuperSAGE tags (UR) from pea ZP0104 leaves infected with Pseudomonas syringae pv. pisi race 2 (strain P134- resistant response).
TAG Sequence Normalized TAG copy
number control
Normalized TAG copy
number
Fold change1
Identification Species2 Gene identification number
UR1 CATGGAAAAAAAAAAAAAAAAAAAA 0.00 1309.44 11.35
UR2 CATGTGTGATATATATGTAAACCTA 0.00 871.69 10.77 Pathogenesis-related protein 5 (PR5)Thaumatin-like protein 1a-like
Vicia fabaG. max
332437276377676540380005617356533313
UR3 CATGAATGTCAATGTGTATAGTGTA 0.00 742.58 10.54 Vacuolar-processing enzyme Pectidase C13 Superfamily
V. sativaM. truncatulaBLASTP
332432300377674792510357357437512356564076
UR4 CATGCATTTATAGCAACTACCGCTGSee tag DR36
0.00 676.11 10.40 Disease resistance response protein 39 (DRR230-b) Defensin-like protein(Gamma-thionine)
V. faba 16907522208744206586423205277589
UR5 CATGCCTATTACAGTCATCAGATGA 0.00 381.98 9.58 Heavy metal transport/detoxification superfamily protein M.truncatulaBLASTP
332486696377675905357443826
UR6 CATGTCACTTCATATCAATGTCAAA 0.00 369.76 9.53 S-adenosylmethionine synthase mRNA 609222609556332429911
UR7 CATGTACTATCGTTCAGTGCTAATA 0.00 365.18 9.51 Purple acid phosphatase-like protein M. truncatula 332445315377672875357478298
UR8 CATGAATGAATAATGTTCGGTGTTASee tags UR133, UR241 and UR250
0.00 316.28 9.31 Putative glycine rich protein precursor (grp1 gene) 114415397
UR9 CATGGGTTCTAAATCTCAAGCAAAA 0.00 299.48 9.23 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein M. truncatulaG. max
377672394332445170356501790
UR10 CATGAATAAATAAATGACACCAGAA 0.00 298.71 9.22 CAP, cysteine-rich secretory protein, antigen 5 (Pr1)Pathogenesis-related protein 1a Basic form of pathogenesis-related protein 1-like
M. truncatulaG. max
3254262532542614325425673254258332542608357446160356554879
UR11 CATGGAAAACTGAAGAACAACATCA 0.00 281.14 9.14 Hypothetical protein Uncharacterized proteinPlant AT-rich sequence and zinc-binding proteins (PLATZ)
M. truncatulaG. maxBLASTP
32544903222359512325449083254498390646358356498155
UR12 CATGGATAGTATAATATTATACAAA 0.00 276.56 9.11 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase M. truncatula 332433887261231664357453896
UR13 CATGTACGAAAACTTGAAAAGAAAA 0.00 275.03 9.10 Sedoheptulose-1 7-bisphosphatase M. truncatula 377672899357461142
UR14 CATGATAGTTGAAAGGCTTGGTGAT 0.00 274.26 9.10 Unknown mRNAProfilin
M. truncatulaBLASTP
332498893261231584217071213
UR15 CATGGAATTGAGTTGGAAAAAGTCA 0.00 268.92 9.07 Heavy metal transport/detoxification superfamily proteinUncharacterized proteinPutative late blight resistance protein homolog R1B-19
M. truncatulaG. maxV. viníferaBLASTP
332478306388512832356527651225454287
UR16 CATGCTATTAGACTTTCAGCTAAAA 0.00 261.28 9.03
UR17 CATGCAGGGTGTTTGTTTATCAAAA 0.00 255.93 9.00 Protease (elsa gene)Cysteine-protease
332445983144223301134881
UR18 CATGCTTATTATAATCATCAGATGA 0.00 255.93 9.00 Heavy metal transport/detoxification superfamily proteinUncharacterizedHeavy-metal-associated domain protein
M. truncatulaG. maxBLASTP
33249235532542590388499379351726611
UR19 CATGGATCATAAACCAAATTAAATT 0.00 255.93 9.00 Putative cysteine protease NTH1 3776756793324317381174170
UR20 CATGTGATATAGAAAAGGAAAATGA 0.00 248.29 8.96
UR21 CATGTAATGTAACTTCTGCCTAAGA 0.00 237.59 8.89 NAC family transcription factor 6 (NAC6) gene??NAC transcription factor-like protein??
Cicer arietinumM. truncatula
332448322242877184357474004
UR22 CATGTTGCTATTTATATAATGAGTT 0.00 237.59 8.89 Endo-beta-1 3-glucanase (PR-2 proteins) M. truncatula 222358586377680144357474068
UR23 CATGCAAAAGGTTATATGATAAAAA 0.00 236.83 8.89 RING finger and CHY zinc finger domain-containing proteinRING finger and CHY zinc finger domain-containing protein 1-like
M. truncatula G. max
332431897356563812358345672
UR24 CATGCGTTTATTATATATTTAATAA 0.00 226.90 8.83
UR25 CATGGCGTAGCAAATACGGTTGGAC 0.00 225.37 8.82 Pre-hevein-like protein (PHLP) (chitin-binding proteins) 7381204332435051
UR26 CATGGCCACTTTTTGCTGAACAACA 0.00 223.08 8.80 UDP-glucuronosyltransferase 1-6 M. truncatula 332454848332438551357494120
UR27 CATGAGTTTAACAAAAAAAAAAAAA 0.00 217.73 8.77
UR28 CATGTATTATTTGTCTTAAAAAAAG 0.00 214.67 8.75
UR29 CATGTTAACTTTGTTGGTGTTGAAA 0.00 209.33 8.71 TIR-similar-domain-containing protein 33246525720339359377681884
UR30 CATGTAATGTGTAACTATAAATAAA 0.00 207.80 8.70 Calcium-dependent protein kinase (CDPK1)?? M. truncatula 33247400837768311860265084
UR31 CATGCCTATTACAGTCATCAGATAA 0.00 200.16 8.65 Hypothetical proteinHeavy-metal-associated domain protein
M. truncatulaBLASTP
33248669632542689377675905357443826
UR32 CATGCATCAATCAATATGTTAAAAA 0.00 197.10 8.62 Photosystem II 10 kDa polypeptide?? M. truncatula 332445519377671119357451408
UR33 CATGTTATGATCACTTTGGGTGAGA 0.00 197.10 8.62 Calmodulin-like protein 332499651332436746535427
UR34 CATGGGGCCTCAAATGGCCTCTATT 0.00 196.34 8.62 HRGP-3 for hydroxyproline-rich glycoprotein-3?? 33243166037051102
UR35 CATGATAATTATAATCAAGCTCAGA 0.00 194.81 8.61 Abscisic stress-ripening protein 1-like G. max 332431573377672873210142728356559644
UR36 CATGCTATAGCGCTACAATTCAAAT 0.00 187.17 8.55 Unknown mRNAPirophosphatase
M. truncatulaBLASTP
377683969332432978388506983
UR37 CATGGGCTATACATACATATATCTC 0.00 181.82 8.51
UR38 CATGAACTCGTTTCGCCAATATAAG 0.00 181.06 8.50
UR39 CATGTTTCCTTTGAAAAAAAAAAAA 0.00 181.06 8.50
UR40 CATGTATCCCTCTCCTTCAATAAAT 0.00 179.53 8.49
UR41 CATGAAGGTTAAGGGTAATGTGTTC 0.00 176.48 8.46 Unknown mRNARibosomal L19e Superfamily
M. truncatulaBLASTP
332461635332444930377671098217071449
UR42 CATGATTTCAAACACTGCAAATAAA 0.00 176.48 8.46 Acyl-CoA dehydrogenase family member 10-likeAcyl-CoA dehydrogenase
G. maxBLASTP
332439773377674698356529377
UR43 CATGATTGTTAAGAAAAAAAAAAAA 0.00 171.89 8.43
UR44 CATGAACGAATAATGCCTTGTTCTA 0.00 169.60 8.41 15-hydroxyprostaglandin dehydrogenase M. truncatula 332432038377674259357475428
UR45 CATGCTCGCTCGCAGCGGCAACAAC 0.00 165.02 8.37 TFIIIA (or kruppel)-like zinc finger protein (zpt2-1 gene) M. sativa 3324333003776751817228328
UR46 CATGAATCAAAAATTGAGATGAAAT 0.00 164.25 8.36 Fumarylacetoacetase M. truncatula 377680779332432934357447870
UR47 CATGTGTTTTCAGAAAAAAAAAAAA 0.00 164.25 8.36
UR48 CATGCAAGTGTAATATAAATACTGT 0.00 159.67 8.32 Protein phosphatase 2C-like proteinSerine/threonine phosphatases, family 2C,
M. truncatula G. maxBLASTP
377675176332433330356549704
UR49 CATGATGCTATTGTTATGAGCCTAA 0.00 158.14 8.31 Unknown mRNAChaperonin 10 Kd subunit (cpn10 or GroES)
M. truncatulaBLASTP
377674447332445015388494687
UR50 CATGTATGAATGATTAATAAATCAASee tag UR239
0.00 158.14 8.31 Phloem specific proteinPhloem specific proteinPhloem specific protein
V. fabaM. truncatula
125380243332445206377671856357461804
UR51 CATGCTGAATTTCAAGAAAATAAAA 0.00 155.85 8.28
UR52 CATGTTATAGTTTGTTTTTCTTTAA 0.00 155.09 8.28 4-hydroxy-3-methylbut-2-enyl diphosphate reductase-like G. max 332433849356545300
UR53 CATGTCTGAATGGAAAAGAGAGAAA 0.00 153.56 8.26
UR54 CATGTAATAATAACGGGACCTTTCA 0.00 152.03 8.25 Chitinase M. truncatula 332445362377672210357443752
UR55 CATGCATCAATCAATAAAAAAAAAA 0.00 150.50 8.23
UR56 CATGATTTAACTGTGTATGTACAAA 0.00 148.21 8.21 Nuclear transcription factor Y subunit C3 (NF-YC3) M. truncatula 332454726332437973388523238
UR57 CATGATGATGCTGGCAAATGTTGAA 0.00 147.45 8.20
UR58 CATGTTTATTTTCGAAAAAAAAAAA 0.00 145.92 8.19
UR59 CATGAAGCAATCTTTGATGAATCAA 0.00 145.15 8.18 NAC domain transcription factor M. truncatula 194394118332436288357508606
UR60 CATGGTTATTAGATTTTGTTGTAAA 0.00 145.15 8.18 Unknown mRNAChloro a-b-binding Superfamily. Fotosystem II
M. truncatulaBLASTP
332438116377671199217071343
UR61 CATGTAGTGACAATGTTTATGAAAASee tag UR93
0.00 145.15 8.18 Peroxidase M. truncatula 332444939377671028357480290
UR62 CATGTTACTGTTTTAGTACAATAAT 0.00 140.57 8.14 Methyl esterasePentatricopeptide repeat-containing protein?? Polyneuridine-aldehyde esterase
M. truncatulaG. max
377672466357483094357483092
UR63 CATGATTCATAGCAAATGAATTGTA 0.00 138.28 8.11 Unknown mRNAUncharacterized protein
M. truncatulaG. max
377672983388492017356540393
UR64 CATGGATAAATTTTACTAGTAGACA 0.00 137.51 8.10 Oxysterol-binding protein-related protein 3A-like G. max 332435008356520898
UR65 CATGTACAATACTTTGCATAAAAAASee tags UR148
0.00 135.99 8.09 Unknown mRNAUncharacterizedDNL zinc finger protein
M. truncatulaG. maxBLASTP
261237008377672788388521382351726881
UR66 CATGCCCAGGTGGTACTAACTATAG 0.00 135.99 8.09
UR67 CATGGATACTATAGTTATAGGCTAA 0.00 135.22 8.08 Hypothetical proteinProtein kinase
M. truncatulaBLASTP
332435620357462504
UR68 CATGTATTATTTCATCAAAAAAAAA 0.00 133.69 8.06
UR69 CATGAATGTTATCATATCGAAAAAA 0.00 132.93 8.05
UR70 CATGTTATTAGACGATAAATTGAAT 0.00 131.40 8.04
UR71 CATGGTAATAGGATAAGAAATAGAA 0.00 130.64 8.03 Uncharacterized protein Diox-N superfamily. Non-haem dioxygenase
G. maxBLASTP
332447863356542741
UR72 CATGAAAGTGTTATAACTGAAAACA 0.00 126.82 7.99
UR73 CATGAGGAGTTTACATAAAAAAGAA 0.00 126.05 7.98 Transmembrane protein, putativeRING-H2 finger protein ATL22-like
M. truncatulaG. max
377675888332446445357482126356540547
UR74 CATGGTTTTATTTTTGTTCAAAAAA 0.00 125.29 7.97 60S ribosomal protein L39 M. truncatula 332434582357466072
UR75 CATGATATATGCAAGACAGAATCAG 0.00 123.76 7.95 Unknown mRNA Uncharacterized protein
M. truncatulaG. max
332430524377671546388505481356516410
UR76 CATGGCAAACAATCATCTTGAATAA 0.00 123.76 7.95 Alanine aminotransferaseAlanine aminotransferase 2
M. truncatulaG. max
377673178357485702351724368
UR77 CATGGTTTTGGAGTCAAAAAAAAAA 0.00 120.71 7.92
UR78 CATGGATGCAATTTGGAAGAAAGGA 0.00 120.71 7.92 Chloroplast outer envelope protein translocator Toc12DNAJ Superfamily (protein translation, folding, unfolding, translocation, and degradation)
BLASTP21980285225728714738049669
UR79 CATGTGTAGTTTCGTTGATCCAATA 0.00 118.42 7.89 Uncharacterized G. max 332432027377672208403043740
UR80 CATGTATTAATAAAAACCTATTTGC 0.00 118.42 7.89 Germin-like protein (ger1 gene)Rhicadhesin receptorGermin-like protein 5-1-like
M. truncatula 3776725446689033357511662356572881
UR81 CATGTTTTGTACTGTTACAACTTCA 0.00 117.65 7.88 Chloroplast ribose-5-phosphate isomerase M. truncatula 332433979357512270
UR82 CATGAATATTCCAATTAAGATAAGA 0.00 116.89 7.87 ABC transporter G family member M. truncatula 332435594357474148
UR83 CATGGGTTGAAGTTTACTCAGTCCA 0.00 115.36 7.85 Threonine synthase M. truncatula 332445143377671854357454544
UR84 CATGAAAGTTTTTGGTCTTTTCAAA 0.00 114.60 7.84 Lipase M. truncatula 332438208357485766
UR85 CATGAAGCTTGATTTTTTTATAAAA 0.00 112.30 7.81
UR86 CATGGAGTTTCTCTGAAAAAAAAAA 0.00 108.48 7.76
UR87 CATGAAATGATTTGCTCTTTCGAAA 0.00 106.96 7.74 Hypothetical protein M. truncatula 377673230332430853357474994
UR88 CATGGGTTGTTAGTGGTGCTCCTCA 0.00 106.96 7.74 Nascent polypeptide-associated complex subunit beta M. truncatula 332445104332445184377671562357473412
UR89 CATGTTCTTAAGAGGAAAAGAAGTA 0.00 104.66 7.71 GMC-type oxidoreductase M. truncatula 332469224377684007357484414
UR90 CATGCTAGTAATTACAAAGTAAAAA 0.00 104.66 7.71 pr1b gene for putative basic PR1 protein Pathogenesis-related protein 1 (PR1)Unknown_mRNA SCP Superfamily, SCP-PR1-like
Vicia fabaM. truncatulaBLASTP
76873801380005615388499003
UR91 CATGGACGGGCGTAACATTACCGTT 0.00 104.66 7.71 Glycine-rich RNA binding protein M. truncatula 377681980357473272357473250
UR92 CATGGTGGTGTTCTACCTAACATCA 0.00 103.90 7.70 Histone H2A homolog 377683784332434626498895169097
UR93 CATGTAGTGACAATGTTTATGATAASee tag UR61
0.00 102.37 7.68 Peroxidase M. truncatula 332444939377671028357480290
UR94 CATGTAATTTTTATGGTTGGAACTT 0.00 101.61 7.67 Citrate synthase M. truncatula 332431779377673454357459290
UR95 CATGAATTATCTGTAATATCTTGCT 0.00 100.84 7.66 Narbonin M. truncatula 222359694377673000358345263
UR96 CATGTAGAATTCAATGAAGACGACA 0.00 100.08 7.65 Uncharacterized Uncharacterized HNH nucleases
G. maxL. japonicusBLASTP
377672360332430188292747064351720794
UR97 CATGCTACTTGGTTTGCAACTTAGA 0.00 99.32 7.63 ABC transporter family pleiotropic drug resistance protein M. truncatula 332441545377674092357513490
UR98 CATGTTTTATTCTCCGTAGGTTTCA 0.00 99.32 7.63
UR99 CATGAAGATTCTATTAAAAAAAAAA 0.00 98.55 7.62
UR100 CATGGATAAACTATATCACTTCAAA 0.00 97.79 7.61 Proteasome subunit beta typeProteasome-beta-type1
M. truncatulaBLASTP
332431466377672457357454306
UR101 CATGGCGTTAGAATTGTATATAAAG 0.00 97.79 7.61
UR102 CATGTGTTAATAGTATTAGTTTAAT 0.00 97.79 7.61 Zinc finger A20 and AN1 domain-containing stress-associated protein Zinc finger A20 and AN1 domain-containing stress-associated protein 3-like
M. truncatulaG. max
377673644357471694356543587
UR103 CATGTGTTATCTGTCCTGATAAAAT Alcohol dehydrogenase-like protein M. truncatula 332432371357520230
UR104 CATGTGTGGACTGAAAGGAATGGAA 0.00 97.02 7.60 Chloroplast ferredoxin-NADP+ reductase 20721141448055
UR105 CATGAAAAGTATATTTATATTTCAAAntisense3
0.00 95.50 7.58 Cold-regulated proteinSrc2 proteinC2 Superfamily, C2-SRC2-like. C2 domain present in Soybean genes Regulated by Cold 2
M. truncatulaG. maxBLASTP
332437274357449248351727730
UR106 CATGTCAAATCAATGCAATTAGCAA 0.00 95.50 7.58 Non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase (gapN) gene
28274679332429800
UR107 CATGTTATAGTTTTTTTGCTATTAA 0.00 94.73 7.57
UR108 CATGCATTGTTTTTATGTAGTTTCA 0.00 93.97 7.55
UR109 CATGGCTGGTCCTGTGTGGAATGAC 0.00 93.20 7.54 Leucine aminopeptidase M. truncatula 332431588377672271357480066
UR110 CATGATTTTTATAGATATGAAAGAA 0.00 91.68 7.52
UR111. CATGCAATATAGTTTATCAAAAAAA 0.00 91.68 7.52
UR1UR12 CATGTGCATTGCATTAAATGAGACA 0.00 91.68 7.52 Unknown mRNAUncharacterizedSuperfamily SoSSB-OBF
M. truncatulaG. maxBLASTP
332433684332430423377673391217073671351726835
UR113 CATGAGAGAAAGTTGTGTTTAAAAA 0.00 90.91 7.51 Early nodulin protein 12A (ENOD12A) gene??Proline-rich protein precursor??
BLASTP 33244125533244538137767112032542857194460513
UR114 CATGTAAAAAGTTTGATTGCAATAA 0.00 90.91 7.51
UR115 CATGCTCAATATGGATGTTTCTAAT 0.00 90.15 7.49 60S ribosomal protein L10?? M. truncatula 332455911357460550
UR116 CATGTGGTTGTGAAATAACCTTAAT 0.00 90.15 7.49 MYB domain containing transcription factorMYB transcription factor MYB93 (MYB93)
M. truncatulaG. max
261234147332432664357476794351723018
UR117 CATGATAAATATGATCTTAGTTTTA 0.00 90.15 7.49
UR118 CATGCATTCTATAACAACAAGAAAC 0.00 89.38 7.48
UR119 CATGGAGATTGAAGAAAAAAAAAAA 0.00 89.38 7.48
UR120 CATGAAAGAAGTTGTCAGCAAAAAA 0.00 88.62 7.47 Glycine-rich RNA binding protein?? M. truncatula 332433554377672439357473272
UR121 CATGCAATGATAGAAACTGATGTAT 0.00 88.62 7.47
UR122 CATGGGAATTGAGATGGTGACCGAA 0.00 88.62 7.47 Aspartic proteinase 2 G. max 332430099356534976351725344
UR123 CATGAGTTTCTTGTTATAAAGAAAA 0.00 87.86 7.46 Protein phosphatase 2C-like proteinProbable protein phosphatase 2C 39-likeSerine/threonine phosphatases, family 2C
M. truncatulaG. maxBLASTP
377675176332433330388500557356549704
UR124 CATGGGCAGAGCAGATTGTAGCATA 0.00 87.86 7.46 Zinc finger CCCH domain-containing protein M. truncatula 261234358357461274
UR125 CATGTAATTACAAACAGAATAAACA 0.00 87.86 7.46 Phospholipase D Phospholipase D beta 1-like
M. truncatulaG. max
261232887261241152357507044356567227
UR126 CATGATGGTCATACTAGATCTATCT 0.00 87.09 7.44
UR127 CATGGTCAGTACTTGTCACCGATCA 0.00 87.09 7.44 Heme-binding-like proteinSOUL heme-binding protein superfamily and Nuclear transport factor 2 (NTF2-like)
M. truncatulaBLASTP
332437144357450682
UR128 CATGTTCGATATTGGTTATGAAAAA 0.00 86.33 7.43 Unknown mRNAYGGT family
L japonicasBLASTP
332430821388510799
UR129 CATGGTGTTGACTCCTCTTGAGCTA 0.00 85.56 7.42 KH domain-containing protein Splicing factor 1 (SF1) K homology RNA-binding domain (KH)
M. truncatulaBLASTP
377677095357445252
UR130 CATGTATCTTGTTTTTCACAAAAAA 0.00 85.56 7.42 Unknown mRNA Uncharacterized
M. truncatulaG. max
332433343377673932388501823351728106
UR131 CATGGTAGAAGTATTTTTACAAAAA 0.00 84.80 7.41 Hypothetical protein Uncharacterized protein
M. truncatulaG. max
332431880377671613357445670356558569
UR132 CATGGTCGGTATATTATTTAAGTTT 0.00 84.04 7.39
UR133 CATGGATGGACGTAACATCACAGTASee tags UR8, UR241 and UR250
6.59 1096.29 7.38 Glycine-rich RNA binding proteinGlycine max 31 kDa ribonucleoprotein, chloroplastic-like
M. truncatulaG. max
332445262357473250356541090
UR134 CATGTACCATCTTATTAAAATAATA 0.00 82.51 7.37
UR135 CATGTGGTGCTTCTTCATTTTTCAASee tag UR163
0.00 82.51 7.37 Cytosolic glutamine synthetase (GS3A) gene 88159320750881595
UR136 CATGTTAGTGAATTTTTAGAATAAG 0.00 82.51 7.37 Amino acid transporter M. truncatula 332444231377674486922343953
UR137 CATGAAAATTGTAATTTTTTTTATC 0.00 82.51 7.37
UR138 CATGCTAGTAATTACAAAAAAAAAA 0.00 80.98 7.34
UR139 CATGGAACATCTTGCTCAATTAGTA 0.00 80.98 7.34 Quinone-oxidoreductase-like protein Quinone-oxidoreductase homolog, chloroplastic-like
M. truncatulaG. max
377673011332430278357470784356543357
UR140 CATGTATTAAAATTATAATGAAAAT 0.00 80.22 7.33 Carnitinyl-CoA dehydratase M. truncatula 332478294357503142
UR141 CATGAGTTTCACAAGAAGAAACTGA 0.00 80.22 7.33 Cytochrome P450PREDICTED: cytochrome P450 71D11-like
M. truncatulaG. max
377677526357438832356524349
UR142 CATGGGTATTCAATCTAGTTTTGTT 0.00 79.45 7.31 60S ribosomal export protein NMD360S ribosomal export protein NMD3-like
M. truncatulaG. max
332431584357460772356539803
UR143 CATGAATTGCATTACGCTAGAAAAA 0.00 79.45 7.31 Pheromone receptor-like protein M. truncatula 332463160357465436
UR144 CATGATGTGTTTTGATACAAAAAAA 0.00 78.69 7.30
UR145 CATGTCTTCAGATGCAAAAAAAAAA 0.00 77.92 7.28
UR146 CATGTCATATCATTAGAATCAGACA 0.00 77.92 7.28
UR147 CATGCTTAAATCATCAAAAACTTAT 0.00 77.16 7.27 Phloem filament protein PP1 M. truncatula 332433068377671865332444589357480544
UR148 CATGTACAATACTTTGCATAACTAASee tag UR65
0.00 76.40 7.26 Unknown mRNAUncharacterizedDNL zinc finger protein
M. truncatulaG. maxBLASTP
332444836377672788388531382351726881
UR149 CATGGAGGAGGTCGTCCAACACAGA 0.00 76.40 7.26 Unknown mRNAProlyl endopeptidase-likePeptidase-S9 Prolyl oligopeptidase family
M. truncatulaG. maxBLASTP
332446612217074501356508956
UR150 CATGTAAATTTTAATATAGTTGTAC 0.00 75.63 7.24
UR151 CATGTTGAGTATAGTGTGAAATAAC 0.00 75.63 7.24 Pyruvate kinase isozyme A, chloroplastic-like G. max 332437183356574786
UR152 CATGAAGTCTGCTTTTGAATAAAAA 0.00 75.63 7.24 Hypothetical protein M. truncatula 261229733261232965377676218357461146
UR153 CATGCTCTTGGTTAGTTTGTAAATT 0.00 74.87 7.23 Unknown mRNAUncharacterized
M. truncatulaG. max
332437924388518940402794839
UR154 CATGATAACTCACTTGTGTAATTTA 0.00 74.87 7.23 Unknown mRNAAldehyde dehydrogenase family 3 member H1-like, transcript variant 2
M. truncatulaG. max
332438996388516634356552696
UR155 CATGGCTACTTTAAGCTTTTGGGGA 0.00 74.10 7.21 60S ribosomal protein L27a-3 M. truncatula 261236480261238082377671749357485678
UR156 CATGGATTAACTGAGTTGCAATTGG 0.00 73.34 7.20 6a-hydroxymaackiain methyltransferase (hmm6) 1568636332497089
UR157 CATGTCAAACTTTCCCAGACAATAA 0.00 72.58 7.18 V-type proton ATPase catalytic subunit A-like G. max 377672668332431836402794850
UR158 CATGGAATCCGTCCAGGAAAAGGTA 0.00 71.81 7.17 60S ribosomal protein L4 M. truncatula 377672741332430181357439780
UR159 CATGTATGGATGTGTTCATAAACTA 0.00 71.05 7.15 SQUAMOSA promoter binding protein M. truncatula 26122962132544822332433216357442094
UR160 CATGTTTAAACAAAATTAAAAGTAA 0.00 71.05 7.15
UR161 CATGAAGCTTGATTTTTTTAAAAAA 0.00 71.05 7.15
UR162 CATGATTTCTGTGTTTCAAAAAAAA 0.00 70.29 7.14
UR163 CATGTGGTGCTTCTTCATTTTAAAASee tag UR135
0.00 70.29 7.14
UR164 CATGACTCTATGGCAAAGAGATTGA 0.00 70.29 7.14 Uncharacterized protein Unknown mRNA
G. maxM. truncatula
332434248377674055356550603388522250
UR165 CATGATGAGCTCTAGGGTGTTTGCA 0.00 69.52 7.12 Calreticulin Calreticulin-1
M. truncatulaG. max
332445442377671751357441868367460054
UR166 CATGATGCTTATCTTGGTAGATGAA 0.00 69.52 7.12 REF/SRPP-like protein Stress-related protein-likeREF Family. Stress-related protein (SRP)
M. truncatulaG. maxBLASTP
332445090357446574356549340
UR167 CATGATGTCCTGCGATTTTCTTATA 0.00 69.52 7.12 Unknown mRNA Eukaryotic translation initiation factor 5A-2-likeEukaryotic translation Initiation Factor 5A (eIF5A)
M. truncatulaG. max
377671532388519552356516829
UR168 CATGGCAGTGAAATAGTAAAAGAAA 0.00 69.52 7.12 COP9 signalosome complex subunit M. truncatula 377677552332435940357445650
UR169 CATGAGAGCCATATCTCAATTCAAT 0.00 69.52 7.12 Callose synthaseCallose synthase 10-like
M. truncatulaG. max
194393815358348998356507328
UR170 CATGGACGAGAAGCAAATCTTTCAA 0.00 68.76 7.10 Ribosomal protein L1 M. truncatula 332435997332430724377671763357461282
UR171 CATGTTTGTTGGAGGAACTGACACA 0.00 68.76 7.10 Cytochrome P450 71A1-like G. max 377671890332430386356563144
UR172 CATGTACATATATTTTAGAGACTCT 0.00 68.76 7.10 Uncharacterized protein Microtubule-associated serine/threonine (MAST) kinase
G. maxBLASTP
332448692377679380356520646
UR173 CATGAAATTTTGTTTTTAAACCCAA 0.00 67.99 7.09 Hypothetical protein DUF 506
M. truncatulaBLASTP
332468630357440534
UR174 CATGTATCCTTTACACCGTTTACAA 0.00 67.23 7.07 Transmembrane protein-like protein M. truncatula 332432244377672548357479932
UR175 CATGTAAAATTTTCTGAGTATTTAT 0.00 67.23 7.07
UR176 CATGTTTTAAGTGTAATAAATTTCT 0.00 66.47 7.05
UR177 CATGTAATATTTGGAAAAAAAAAAA 0.00 66.47 7.05
UR178 CATGTATTTTTTTTTTGGTTAATTA 0.00 65.70 7.04
UR179 CATGAACCTCATTGAGTTGGACACA 0.00 65.70 7.04 40S ribosomal protein S19-1 M. truncatula 332433144377671971357515378
UR180 CATGAAGTTGTTATTATGAACTAAT 0.00 64.94 7.02 Nodulin MtN21/EamA-like transporter family protein Auxin-induced protein 5NG4-like
M. truncatulaG. max
332434428377672952357461542356518532
UR181 CATGAATGAAATTGATTGAGTAAAA 0.00 64.17 7.00
UR182 CATGATACAAAAAGTTGGATCGCAT 0.00 64.17 7.00 Putative NADH-dehydrogenaseExternal NADH-ubiquinone oxidoreductase
M. truncatula 37725946357475816
UR183 CATGGATGTTTCAGACACTGCCAAA 0.00 64.17 7.00 GTP-binding protein Ras-like proteinRab GTPase family 1
M. truncatulaBLASTP
377672805332429889303747357445236
UR184 CATGTCTATTGTTGCAAAAAAAAAA 0.00 64.17 7.00
UR185 CATGAAAAACAATTTTCCATTAAAA 0.00 63.41 6.99 Unknown mRNA Uncharacterized protein
M. truncatulaG. max
377671673332431079388514284356562913
UR186 CATGTTAAAATTAACTTTGGTGCTA 0.00 62.65 6.97 FRIGIDA-like protein G. max 332431505377674725356504457
UR187 CATGGATTTATATTACTATTTAAAA 0.00 61.88 6.95 40S ribosomal protein S17 S17e Superfamily
M. truncatulaBLASTP
377671551358343460
UR188 CATGGGAAGACGGAAGAGACGGTGA 0.00 61.88 6.95 Short-chain type dehydrogenase/reductase Short-chain type dehydrogenase/reductase-like
M. truncatulaG. max
377673004332449453358346913356560962
UR189 CATGTATATTGTTACTCAAAAAAAA 0.00 61.88 6.95
UR190 CATGTGTTTATATGTTTATCTAGTT 0.00 61.88 6.95 Unknown mRNA DUF 4408
M. truncatulaBLASTP
332439142388515446
UR191 CATGATAATTGATGGGATCTAATTC 0.00 61.12 6.93 Hypothetical proteinUncharacterized
M. truncatulaG. max
332431529377674034357445534357445534
UR192 CATGCCGATCCTGATGATCTTGGGA 0.00 61.12 6.93 Copper zinc superoxide dismutase 60360879169069
UR193 CATGGCAATATTCCTCCCTAAAAAA 0.00 61.12 6.93 ATP synthase subunit epsilon Putative epsilon subunit of mitochondrial F1-ATPase (f19c24.25 gene)
M. truncatulaC. arietinum
33243055637767259335748695221068675
UR194 CATGTCCAATTGCATCTAAAAAAAA 0.00 61.12 6.93
UR195 CATGTTTGTTTTCCACTTGACCAAA 0.00 61.12 6.93
UR196 CATGACAAAGCAGACCGAATTCAAA 0.00 60.35 6.92 Isocitrate dehydrogenase Isocitrate dehydrogenase
M. truncatulaG. max
332432779377672687357465470356533247
UR197 CATGGTTGACACTAATCAGAGGTAT 0.00 60.35 6.92 LRR receptor-like serine/threonine-protein kinase Probable inactive receptor kinasePKc-like Superfamily, LRR-8 Multidomains
M. truncatulaG. maxBLASTP
332430912357496268356573436
UR198 CATGTATATAGTTTAATTTCATTGA 0.00 60.35 6.92
UR199 CATGTCTTTGGATACTGTCATACTT 0.00 60.35 6.92 Unknown mRNA Ran-binding protein 1 homolog b-likeRan-binding domain
M. truncatulaG. maxBLASTP
377671411388518784356576094
UR200 CATGCTTAAAATATCTTTCATATTA 0.00 59.59 6.90 40S ribosomal protein S20-2 M. truncatula 377671842357470584
UR201 CATGGAACAATACTTTGTATTAGTA 0.00 59.59 6.90
UR202 CATGGTTAATTTATGAAAAGAAACA 0.00 59.59 6.90 Cysteine synthase M. truncatula 377672811357480874
UR203 CATGCAAAATATCTTTTGTTTCAAA 0.00 58.83 6.88 PPF-1 proteinProtein PPF-1, chloroplastic-like
G. max 4218522332429811356539021
UR204 CATGGGCTATACATACATAAAAAAA 0.00 58.83 6.88
UR205 CATGGTCTCAAATGTTATTGAAAAC 0.00 58.83 6.88 Cinnamyl alcohol dehydrogenase Cinnamyl alcohol dehydrogenase-like
M. sativaG. max
37767467519594356575669
UR206 CATGTTATATGGAATTTGCTCTTAA 0.00 58.83 6.88 Acyl carrier proteinAcyl-carrier protein
M. truncatulaBLASTP
377676112332431764357447472403043891
UR207 CATGTTTGATAGAAAAATGTAATAT 0.00 58.83 6.88
UR208 CATGATAATATAAGCAATGCAATTA 0.00 58.06 6.86
UR209 CATGCAATCATTCGGCTCGCAAGGA 0.00 58.06 6.86 Gamma-soluble NSF attachment protein Gamma-soluble NSF attachment protein-like
M. sativaG. max
377672004332430274358344550356556486
UR210 CATGGATTAATGGTCAATTGGATTA 0.00 58.06 6.86
UR211 CATGGGATTGGACAACGTAAATTGA 0.00 58.06 6.86 Coatomer subunit beta-1-like Coatomer-beta-C
G. maxBLASTP
377678081332434664356526313
UR212 CATGTCTTGGATGATAATGATGAGA 0.00 58.06 6.86
UR213 CATGACATTTCACATTGCAAAATGC 0.00 57.30 6.84 Glycine max protein kinase APK1A, chloroplastic-like G. max 377679254332434011403044465
UR214 CATGCTTTATGTATAAAAGAAACAT 0.00 57.30 6.84 Chaperone protein dnaJ ?? M. truncatula 332433046332431517357489940
UR215 CATGGTTATCTCAAGTCATTGTATA 0.00 57.30 6.84
UR216 CATGTGAATGATTTTGGTAAAAAAA 0.00 57.30 6.84
UR217 CATGAATTATTAGAAACATTACATCAntisense
0.00 56.53 6.82 Peroxidase Peroxidase
M. truncatulaT. repens
3776713403574763704138646
UR218 CATGATTATTATCAATAGCAAAAAA 0.00 56.53 6.82
UR219 CATGGCTGATTTCAGAGAACAGTAT 0.00 56.53 6.82 HMG1/2-like protein HMGB-UBF-HMG-box
M. truncatulaBLASTP
377671617332444979357517686
UR220 CATGGTTGAGATGGCCAAATCAGTG 0.00 56.53 6.82 Probable UDP-arabinopyranose mutase 5-likeReversibly glycosylated polypeptide. RGP Superfamily
G. maxBLASTP
377675759332433423356566936
UR221 CATGTTCATTATTGATGAAAAAAAA 0.00 56.53 6.82
UR222 CATGTTTTTGCACAGGATTTATTCA 0.00 56.53 6.82 RING finger and transmembrane domain-containing protein 2-likeRING Superfamily
G. maxBLASTP
332454515356509107
UR223 CATGACCTGTCCTCTCTTCGACACA 0.00 55.77 6.80 O-linked GlcNAc transferase like protein ?? M. truncatula 332435370357441256
UR224 CATGAAATGAAATATGTGAATTGAA 0.00 55.01 6.78
UR225 CATGAATTTATATTTACTGATTTAASee tags US123
0.00 55.01 6.78 UncharacterizedRibosomal S10 Superfamily
G. maxBLASTP
377672855351722900
UR226 CATGCAGGATCTAAAATTTAACTGA Antisense
0.00 55.01 6.78 Unknown mRNA Thiazole biosynthetic enzyme
M. truncatulaG. max
377672757388512816356536042
UR227 CATGCTTTATAGCAAGTGGTTTTTA 0.00 55.01 6.78
UR228. CATGAATGTTGAAAACTTTATAATA 0.00 54.24 6.76
UR229 CATGCCATAGAAATGATATAATTCA 0.00 54.24 6.76
UR230 CATGGTTGACTTAACTTAAAAAAAA 0.00 54.24 6.76
UR231 CATGTAATGGTTCCTTCCTTTAAAT 0.00 54.24 6.76
UR232 CATGAGTAGAGGTTTTGGCTTTGTT 0.00 53.48 6.74 Translation initiation factor 3 subunit Translation initiation factor 3 subunit G-like
M. truncatulaG. max
332435744357521656356567602
UR233 CATGAAACTTGAAAATTAAAAAAAA 0.00 52.71 6.72
UR234 CATGATTGGATTTGAGTTTTAAAAA 0.00 52.71 6.72 60S ribosomal protein L17?? M. truncatula 377671899357463032
UR235 CATGGAGCAAAATAAGGAGAAAAAT 0.00 52.71 6.72 Hypothetical protein Uncharacterized
M. truncatulaG. max
332431367377672761357464418403044051
UR236 CATGGATCTTTGGCCCGTGCCGGGA 0.00 52.71 6.72 40S ribosomal protein S3040S ribosomal protein S30-like
M. truncatulaG. max
332431297357476844356514307
UR237. CATGAGGAACAAGGATAAGGGAAGCAntisense
6.59 570.68 6.44 Proline-rich protein precursor BLASTP 332441255332445381194460513587508
UR238 CATGCAGGTGTGGCCTCCAATTGGA 26.37 2195.64 6.38 Ribulose 1.5-bisphosphate carboxylase (RBC) small subunit 16915216914720856
UR239 CATGTATTTGAATTAATTAATAAAASee tag UR50
6.59 460.67 6.13 Phloem specific protein mRNA Phloem specific proteinPhloem specific protein
332445206377671856
UR240 CATGGTTGGATGGATATGTGAATAA 26.37 1637.18 5.96 3-thioredoxin h B5 thioredoxin h
M. truncatula 2746689333243427671534921
UR241 CATGAATGAATAGTGTTTGGTGTAASee tags UR8, UR133 and UR250
52.73 3263.67 5.95 Glycine rich protein precursor (grp1 gene)Dormancy-associated protein (DRM2)
3324415053324457431144153972605888
UR242 CATGATGAAGGGTGGTGGAAGAAGA 6.59 388.10 5.88 Uncharacterized protein G. max 332437292356524737
UR243. CATGTGTTAGTGTTTAAAAAAAAAA 13.18 656.25 5.64
UR244 CATGGAGGCAAGAAGTGGAAGTAAA 19.78 946.56 5.58 GPRP Glycine- and proline-rich protein Proline-rich family protein (PRP1)
V. fabaC. arietinum
332445321377672140323669575169870350
UR245 CATGTTTGCAATAGCTAAAAAAAAA 6.59 313.23 5.57
UR246 CATGAACTTCACATCGGTGATCTAA 13.18 611.94 5.54 Beta xylosidase Beta-D-xylosidase 1-like
M. truncatulaG. max
377672404332430269357449038356556037
UR247 CATGTAAGGTCTCAATAGTTAAATA 13.18 561.52 5.41 Hypothetical protein ?? M. truncatula 377671461357478944
UR248 CATGTATTAATCATAAAAAAAAAAA 6.59 278.08 5.40
UR249 CATGATGTTTTCTAAAAAAAAAAAA 6.59 241.41 5.19
UR250 CATGAATGAATAATGTTTGGTGTTASee tags UR8, UR133 and UR241
369.13 13375.55 5.18 Putative glycine rich protein precursor (grp1 gene). 114415397
UR251 CATGGGAAAAAAAAAAAAAAAAAAA 19.78 691.39 5.13
UR252 CATGTATAATTAATTGGATGAAAAASee tag UR254
32.96 1089.42 5.05 Pathogenesis-related protein 4A (PRP4A) Pathogenesis-related protein 4 (PR-4)Pre-hevein-like protein (PHLP)
L. culinaris 3254433122235947873812024015553524090341217381204
UR253 CATGACTGATCAAACAAGAAAACAA 13.18 418.65 4.99 ATP-dependent Clp protease proteolytic subunit-related protein ATP-dependent Clp protease proteolytic subunit-related protein 3, chloroplastic-likeCaseinolytic protease (ClpP)
M. turncatulaG-maxBLASTP
377682124357511830403043641
UR254 CATGTATGTATACTTAATTGGATGASee tag UR252
6.59 204.74 4.96 Pathogenesis-related protein 4 (PR-4) L. culinaris 37767183832544574332436140409034121
UR255 CATGAAGAACCATTTTCATTTCAAA 6.59 198.63 4.91 Aspartic proteinase Aspartic proteinase-like
M. truncatulaG. max
377672202357511706356505734
UR256 CATGGAACAATTGTTTGCAAAAAAA 6.59 194.81 4.89
UR257 CATGAGGACGACAGATGTAACTGGA 6.59 189.46 4.85 Translation elongation factor (tufA) gene 233065420070083
UR258 CATGATAATAGATTGATTCTACGAT 6.59 181.82 4.79 Metal transport protein (ZIP7) Max zinc transporter 2-like
M. truncatulaG. max
37768012633243598038036139356566491
UR259 CATGAAATGATTTGCTCTTTCGACA 13.18 352.19 4.74 Hypothetical protein M. truncatula 377673230332430853357474994
UR260 CATGACACAATCCTGAAATTTCTAA 6.59 168.07 4.67 Unknown mRNA Uncharacterized protein
M. truncatulaG. max
332431431377673937388494101356576488
UR261 CATGTGTCATTCTAATAAAATAAAC 65.92 1631.07 4.63 Cytochrome P450 Cytochrome P450 monooxygenase (cyp gene)
M. truncatulaC. arietinum
3324421673776741523575159106002278
UR262 CATGTACCGTAGAGCACATCAAAGA 6.59 157.38 4.58 Mitogen-activated protein kinase Mitogen-activated protein kinase 4-like
M. truncatulaG. max
377676569357481558403043794
UR263 CATGTTCAGTTTGAAATAGTGGTTA 6.59 156.61 4.57 Nascent polypeptide-associated complex NAC-Superfamily and UBA-Superfamily
M. truncatulaBLASTP
377671623357509188
UR264 CATGGATTGCCTCTGGCATAAATAC 6.59 149.74 4.51 LITAF-domain-containing protein (LITAF) LITAF-domain-containing protein
M. truncatula 63334260332433606377671491357501360
UR265 CATGATTGATTAGTTGTTTTGTTTA 6.59 146.68 4.48 Protein kinase M. truncatula 332433723357479456
UR266. CATGTTGATTAAAGAAAAAAAAAAA 6.59 143.63 4.45
UR267 CATGGTGTTAGATATAATAGAATCA 26.37 539.36 4.35
UR268 CATGAAGAATTTTAGTGAAACAATA 6.59 127.58 4.27 Transcription regulation protein, putative F-box/kelch-repeat protein At1g57790-likeF-box like family
M. truncatulaG. maxBLASTP
332431037377674384388513168356548440
UR269 CATGTCATCATTGAGACAAACCGAASee tag DS128
6.59 126.82 4.27 Magnesium-protoporphyrin IX monomethyl ester Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
M. truncatulaG. max
332445045377673156357509134356504618
UR270 CATGGATCTCTCTTCAGCAGATTGA 171.38 3194.15 4.22 MEY type 1 metallothionein Metallothionein-like protein
33244495437767106947076863312504
UR271. CATGGTAAACTGATACAAAAAAAAA 13.18 239.89 4.19
UR272 CATGTTTGTGACAAAAAAAAAAAAA 13.18 236.07 4.16
UR273 CATGTTTTAAAAAAAAAAAAAAAAA 59.32 1042.05 4.13
UR274 CATGTTATTTTTCAAAAAAAAAAAA 13.18 231.48 4.13
UR275 CATGTTTGATGATCAAAAAAAAAAA 6.59 111.54 4.08
UR276 CATGTGGAAGAGGATCATCTAAAAT 13.18 219.26 4.06 Glutaredoxin M. truncatula 332431776377675468357461920
UR277 CATGTAAAACTTATGTAGCTTGTTA 6.59 109.25 4.05 ATP-dependent Clp protease adapter protein clpS M. truncatula 377673168357488428
UR278 CATGTATTGCATTCAAATTTGCTTA 6.59 106.19 4.01 PsCHS5 gene for chalcone synthase 23512071 Fold change was calculated as log2 (Normalized TAG copy number resistant/ Normalized TAG copy number control), when this last value was 0.0 was substituted by 0.5.
2 Only additional species to Pisum sativum are indicated; BLASTP indicated that a further search of the amino acid sequence was carried out.
3 Antisense means that the tag sequences coincides with the gene antisense sequences.
?? Means that the available pea sequence was too short, or that the tag sequence was not completely complementary for a sure identification.
Supplementary Table 5. Underrepresented deepSuperSAGE tags (DR) from pea ZP0104 leaves infected with Pseudomonas syringae pv. pisi race 2 (strain P134- resistant response).
Tag sequence Normalized TAG copy
number control
Normalized TAG copy
number
Fold Change1
Identification Species Gene identification number
DR1 CATGTAAAAAAAAAAAAAAAAACTG 384.23 0 -9.59
DR2 CATGTATAGATACATATATTTATAA 90.36 0 -7.50 Serine hydroxymethyltransferase 227307897169157377672449
DR3 CATGTAGAGACCGCATCCCAGCAGT 128.57 0.76 -7.39
DR4. CATGCTAGAGACCGCATCCCAGCAG 114.61 0.76 -7.22
DR5 CATGTTCTTCCCAATTTAATGTGAA 154.28 1.53 -6.66 Light-harvesting chlorophyll-a/b binding protein Lhcb1Chlorophyll-a/b binding protein 8, CAB8
325429663324850833254307116905056809378
DR6 CATGTCTTGTGTATTAGTAAATGTT 914.66 10.70 -6.42 Transmembrane protein, putativePREDICTED: zinc finger protein 512B-like
M. truncatulaG. max
332431228388522030356548908
DR7 CATGTGAATATTGTTCCTATTTCAG 61.71 0.76 -6.34
DR8 CATGTTGCATTGAAGTTGTTACTTG 52.16 0.76 -6.09 Ripening-related protein mRNAMLP-like proteinPathogenesis-related protein 10a (PR-10a)
M. truncatulaL. culinaris
33243599034452232357515826409034127
DR9 CATGTATTCAGAAATGAACTCTGTG 48.49 0.76 -5.99 Ultraviolet-B-repressible protein?? 1847649737767197932542456
DR10 CATGCCGCATCCCAGCAGTTTTTTT 85.96 1.53 -5.81
DR11 CATGTAGTGCCAATGTTTATGATAT 21.30 0 -5.41
DR12 CATGTACAGAAGAACTGAGATTGTT 19.84 0 -5.31 Photosystem I chlorophyll a/b binding protein mRNAPSI light-harvesting antenna chlorophyll a/b-binding protein (lhcA-P4)
125660619330370635
DR13 CATGGGAATCGCCTAAAGAACAGAT 19.10 0 -5.26 Photosystem I reaction center subunit II M. truncatula 332488311357480840
DR14 CATGGATGATGTATGTGTTGGTTGT 16.90 0 -5.08
DR15 CATGTTATCTTCTATTTTATTTTCT 72.00 2.30 -4.97
DR16 CATGTGTTGAGGTTTGGCAGAGTTC 45.55 1.53 -4.90 Unknown mRNABTB/POZ domain-containing proteinBTB/POZ domain-containing protein
M. truncatulaG. maxBLASTP
332446288377678400388495745356513374
DR17 CATGTAATTTATAAACAATTTTCTT 409.94 15.28 -4.75 Fasciclin-like arabinogalactan protein?? M. truncatula 332430395357495516
DR18 CATGCATTGTTTGGTCCCCCTTTGC 13.24 0 -4.75 Nuclear transcription factor Y subunit A7 (NF-YA7)Nuclear transcription factor Y subunit A-9-like
M. truncatulaG. max
332452766194391827388523192403044151
DR19 CATGCTGCGTTTGTGCTGTTAACTT 58.04 2.30 -4.66
DR20 CATGTTTTGTAATTAATTTCATCAT 19.10 0.76 -4.64
DR21 CATGTTTGGTGATTTTGGGTGATTG 148.4 6.11 -4.60 Nitrate transporter M. truncatula 332447026357493284
DR22 CATGCGCATCCCAGCAGTTTTTTTT 18.37 0.76 -4.59
DR23 CATGATCAAACACATACATCTATTT 11.75 0 -4.56
DR24 CATGTACATAAGAACTGAGATGGTT 12.75 0 -4.53DR25 CATGAGATCTTGTTTTTGTTTTATG 35.26 1.53 -4.53
DR26 CATGGACCCTTATGTGTCAAAGAAT 11.02 0 -4.46
DR27 CATGCATATGGCTATCTTTCATTTG 48.49 2.30 -4.40
DR28 CATGAGAACTCCAAGCTTGAGCCTC 10.28 0 -4.36
DR29 CATGATGTGTAAGTATGATTGCATC 10.28 0 -4.36 Photosystem I psaH proteinPhotosystem I reaction center subunit VI
T. pratenseM. truncatula
33243931937767122833520418357454926
DR30 CATGTTGAAAACTTTGAGTTGATTG 47.02 2.30 -4.36 Unknown mRNA 377676035332430012
DR31 CATGGAGTAAAGTATGCCATATAAA 15.43 0.76 -4.34
DR32 CATGTTTTGGCTGTGATTCTTCTTC 15.43 0.76 -4.44
DR33 CATGATGCGCCCTTGTGAAGGGGGT 9.55 0 -4.25
DR34 CATGTTGAACTGTTTGATGTCCCTT 9.55 0 -4.26 AMMECR 1 family proteinUncharacterized proteinAMMECR1 Superfamily
M. truncatulaG. maxBLASTP
377672675332430261388502293356575145
DR35 CATGTGTTTGTGTGCTTTTCTTTTG 28.65 1.53 -4.23
DR36 CATGAAGTTATAGCAACTACCGCTGSee tag UR4
8.81 0 -4.14 Pea disease resistance response protein 39Defensin (Def2.1) geneGamma-thionin family. Defensin-like protein
M. truncatula BLASTP
2220874416907533243684437362323
DR37 CATGAATGTTTTGGAATATCATAGG 8.82 0 -4.14 Unknown mRNARRM (RNA recognition motif) Superfamily
M. truncatulaBLASTP
377677609332438934261237429388502671
DR38 CATGCGAATAATCAATCTATTTTAC 8.82 0 -4.14
DR39 CATGGTGCTGTTTGGCACTTTCAGT 8.81 0 -4.14
DR40 CATGTTTAAAACGTATGCAATGTTG 8.81 0 -4.14
DR41 CATGCACTTCTGGGACCTGAGACTC 24.98 1.53 -4.03 Photosystem II CP43 protein; chloroplast genes 27435889343022
DR42 CATGTACATTTTTCATTTGATTTGG 24.98 1.53 -4.03
DR43 CATGATTTGGGATCACCCTAAGGCTAntisense
8.08 0 -4.01 EPIDERMAL PATTERNING FACTOR 2-like G. max 261238304332467519356556992359806367
DR44 CATGCGTCTTTATGTGTTTCACGTA 8.08 0 -4.01 Glicine-rich proteinUncharacterized protein
C. arietinumG. max
33245350621068671356524272
DR45 CATGTTTTATTATCTTAATATGTAT 8.08 0 -4.011 Fold change was calculated as -log2 (Normalized TAG copy number control/ Normalized TAG copy number), when this last value was 0.0 was substituted by 0.5.
Supplementary Table 6. Overrepresented deepSuperSAGE tags (US) from pea ZP0104 leaves infected with Pseudomonas syringae pv. pisi race 6 (strain P123- susceptible response)
TAG Sequence Normalized TAG copy
number control
Normalized TAG copy
number
Fold change1
Identification Species Gene identification number
US1 CATGTCACAAGAACAGAATGAACAT 0.00 481.19 9.91 Cryptochrome 2B (CRY2B) Cryptochrome 2B M. truncatula
3324455633772501045935263357439516
US2 CATGGATGGATATGTGAATAAAATC 0.00 309.81 9.28
US3 CATGTTCTGCTGTATAAATGATTTG 0.73 355.95 8.92 Inhibitor of trypsin and hageman factor Proteinase inhibitor-like
M. truncatulaG. max
377673269357441046356576500
US4. CATGTATCCCATCTTAAATAAGATT 0.00 138.42 8.11
US5 CATGCTGCTGACCGCATCCCAGCAG 0.73 197.75 8.07
US6 CATGTTTTTTTTTTTTTTTTTTTTT 0.00 131.83 8.04
US7 CATGCACCGAAGCTACGGGTATCAT 0.73 171.38 7.87 rDNA 23S Pseudomonas syringae pv. syringae
377671115
US8 CATGTTGTTCGACAGAAGTAAAGAG 0.73 164.79 7.81
US9 CATGAATAATAATAACCTATATTCA 0.00 105.47 7.72 Drm3 mRNA ??Dormancy/auxin associated protein??
M. truncatula 21552997357511876
US10 CATGCTCTGTGGCATCCGAGTTGTA 0.73 151.61 7.69
US11 CATGAAAAAAAAAAAAAAAAAAACT 0.00 72.51 7.18
US12 CATGTGTCATTGTAATTTTGTACAC 0.00 72.51 7.18
US13 CATGTTCAGGAAGAAAATAAATTCC 0.00 72.51 7.18
US14 CATGTTGATTAATGTTATGCGTGAA 0.00 72.51 7.18
US15 CATGTTGCATATTATGGAGAAATAA 0.00 65.92 7.04 Peroxiredoxin (prx gene)Peroxiredoxin
M. truncatula 377671816189094612357500688
US16 CATGTTTTATGATTTGTATTTTTTT 2.20 270.26 6.94
US17 CATGCTGCTGACGCATCCCAGCAGT 0.00 59.32 6.89
US18 CATGGGAGAAAGTTGTGTTTTGTTC 0.00 59.32 6.89 Early nodulin protein 12A (ENOD12A) gene??enod12 gene??Proline-rich protein precursor??
V. sativaBLASTP
37767112033244538119446051312056110
US19 CATGTATACCATCTTAAATAAGAGT 0.00 59.32 6.89
US20 CATGTATGTGTATATGTGTGTCTTT 0.00 59.32 6.89 Wound-inducible cytochrome P450 Cytochrome P450 71A26-like Cytochrome P450 family
G. maxBLASTP
332431935377672200356561680
US21 CATGTGCCATTGTAATTTTGTGCACSee tag US68
0.00 59.32 6.89 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) subunit A (EC 1.2.1.13) Glyceraldehyde-3-phosphate dehydrogenase A
M. truncatula 20728377673897332444877357508528
US22 CATGTTAAAATTTTGTGGATTTCCT 0.00 59.32 6.89
US23 CATGTTAGCTTCCAATGTAATAAAG 0.00 59.32 6.89 ABA-responsive proteinPathogenesis-related protein 10b (PR-10b)
L. culinaris 20632332445605409034125
US24 CATGTTGTATTTTATGAATCTTGCT 0.00 59.32 6.89 Photosystem I reaction center subunit XI M. truncatula 377671646357507746
US25 CATGTCTTGATTATCACTTTTCTTT 11.02 1212.86 6.78 Embryo-abundant protein EMB MethyltransferaseMethyltransferase DDB
M. truncatulaBLASTP
20339365332431978357509478356504711
US26 CATGATAAAAAAAAAAAAAAAAAAA 0.00 52.73 6.72
US27 CATGCTGTCTTTTATGAATCTTGCT 0.00 52.73 6.72
US28 CATGGATAATCCAAGTTTAAAACTG 0.00 52.73 6.72
US29 CATGTTCCTTTGTTTTTTTTTTTGT 0.00 52.73 6.72
US30 CATGTTTTAAAATGATTCTAACTCG 0.00 52.73 6.72
US31 CATGTTTTTTCTTCTCTATTTTTCC 0.00 52.73 6.72 Aldo/keto reductase family oxidoreductaseProbable NAD(P)H-dependent oxidoreductase 1-like
M. truncatulaG. max.
377671996332434433357473646356560086
US32 CATGCAAAAAAAAAAAAAAAAAAAA 0.00 46.14 6.53
US33 CATGCTGCTGAACCGCATCCCAGCA 0.00 46.14 6.53
US34 CATGTATTTGAACCTTGAATGTGAA 0.00 46.14 6.53
US35 CATGTCATTCAATATATAGTGCTAA 0.00 46.14 6.53
US36 CATGTTCCAATATTAATGAAAATGA 0.00 46.14 6.53
US37 CATGTTTTGATTAAGTTAAGGATAT 0.00 46.14 6.53
US38 CATGGAGACACATAGTTTACTTCTT 12.49 1120.58 6.49 U-box domain-containing protein U-box domain-containing protein 27-like
M. truncatulaG. max
377678696357464564356525585
US39 CATGCAAGTCGAGCGGCAGCACGGG 0.73 65.92 6.49
US40 CATGCTGCTGCGCATCCCAGCAGTT 0.73 59.32 6.34
US41 CATGAAATAAATTTGGTGGTCTATTSee tag US85
0.00 39.55 6.31 Glucan endo-1.3-beta-glucosidase Beta-1.3-glucanase
M. truncatulaL. culinaris
332435957377676391357448996409034123
US42 CATGAAATCAAATGAAAGATCTTGC 0.00 39.55 6.31 Chalcone isomeraseChalcone isomerase
M. sativa 37048709166397
US43 CATGAACTTGCTAATGACTGTGCTT 0.00 39.55 6.31 LATE BLOOMER 1 (LATE1)GIGANTEA
M. truncatula 332447954145567025357443536
US44 CATGAGAGAAAGTTGTGTTTTTTTC 0.00 39.55 6.31
US45 CATGATAGAAAGTTGTGTTTTGTTC 0.00 39.55 6.31
US46 CATGGTCATATGCTACCACCTTTGT 0.00 39.55 6.31
US47 CATGTAATGTATTTTGCAACCTACT 0.00 39.55 6.31 Extensin (Ext)??Extensin (SbHRGP3) gene??
M. truncatulaG. max
3324453783324450853303706361165321
US48 CATGTACTTTTTTTTCTTATTCAAT 0.00 39.55 6.31
US49 CATGTATCTCATCTTAAATAAGAGT 0.00 39.55 6.31
US50 CATGTATGCCTCTCCTTCAATAAAT 0.00 39.55 6.31 Disease resistance response protein PR10 (DRR49a) gene Disease resistance response protein (PI49)
33249803996726922552
US51 CATGTCTCCCATCTTAAATAAGAGT 0.00 39.55 6.31 Carbonic anhydrase 33250504020672
US52 CATGTTAAAAAAAAAAAAAAAAAAA 0.00 39.55 6.31
US53 CATGTTATGGAGTCTGCGAAAAAAT 0.00 39.55 6.31
US54 CATGTTTATAGAATGCCTTTTTATT 0.00 39.55 6.31
US55 CATGACTTAATGCAATGAAGGTACT 0.00 32.96 6.04
US56 CATGAGATATCTCCTATTTTCTCTC 0.00 32.96 6.04 Beta-glucosidase G2??Beta-glucosidase 24-like?
M. truncatulaG. max
377675479158634899356541821
US57 CATGATCTGTGTATGGGGTTTGCAC 0.00 32.96 6.04
US58 CATGATTTTTTTTTTTTTTTTTTTT 0.00 32.96 6.04
US59 CATGCCATCAATAGGTGCAAGCATT 0.00 32.96 6.04
US60 CATGCGATAGTGAAAGACAGATGTT 0.00 32.96 6.04
US61 CATGGAGTTGCCAATGAAGTTGATG 0.00 32.96 6.04
US62 CATGGTTCCTTCCTATGTTGTTTCT 0.00 32.96 6.04
US63 CATGTAAAATAAAAATGTCCCTTAC 0.00 32.96 6.04
US64 CATGTAAGTCTTTTTATTAAGCCTC 0.00 32.96 6.04
US65 CATGTACCTCATTCTAGTTTTCCCTSee tag DS56
0.00 32.96 6.04 Glycine max 40S ribosomal protein S25-2-like Ribosomal S25 Superfamily
G. maxBLASTP
332432111377671300356538746
US66 CATGTCATATCATCCTTAAGTGGAC 0.00 32.96 6.04
US67 CATGTGACATTGTAATTTTGTACAC 0.00 32.96 6.04
US68 CATGTGCCATTGTAATTTTGTTCACSee tag US21
0.00 32.96 6.04 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) subunit A (EC 1.2.1.13)gpa1 gene for glyceraldehyde-3-phosphate dehydrogenase. subunit A
20728332444877
US69 CATGTTAATCAATTCTTTAATGCCT 0.00 32.96 6.04
US70 CATGTTGGATAATATGGTTGTACCT 0.00 32.96 6.04 Unknown mRNA Probable nicotinate-nucleotide pyrophosphorylaseNicotinate-nucleotide pyrophosphorylase
M. truncatulaG. maxBLASTP
332437582217072003356530753
US71 CATGTTTAGTATAGGATATACTCAG 0.00 32.96 6.04
US72 CATGTTTCATTGATCCATTAACCTCAntisense
0.00 32.96 6.04 Hypothetical protein M. truncatula 332449927357476518357476524
US73 CATGTTTCTAAAAAAAAAAAAAAAA 0.00 32.96 6.04
US74 CATGTTTGCAGCCTCAGTGTTTCAG 0.00 32.96 6.04
US75 CATGTTTTTTTTTTCTATGTATGTA 0.00 32.96 6.04
US76 CATGGTGTAATCAGTTACCATCCCT 0.73 46.14 5.97 1-aminocyclopropane-1-carboxylate oxidase-like proteinGibberellin 20 oxidase 1-B 1-aminocyclopropane-1-carboxylate oxidase homolog 4-like
M. truncatulaG. max
377674030358347265356521138
US77 CATGGTTATGGATGGATGATTGATT 0.73 46.14 5.97
US78 CATGGTTTTTAATTGCCAATTTTGC 0.73 46.14 5.97
US79 CATGAAGTTTGGTTTGTTCATCTTC 0.73 39.55 5.75
US80 CATGATGAACATCTCAAATTTCTTC 0.73 39.55 5.75 Vicianin hydrolase Beta-glucosidase Vicianin hydrolase-like
V. sativaM. truncatulaG. max
37767178333243106086553272357457464356528559
US81 CATGTGGTTGAGAATAACATTGTCC 0.73 39.55 5.75 B12D-like protein Uncharacterized protein B12D family.
M. truncatulaG. maxBLASTP
377671444357462024356516715
US82 CATGTGTGATGGCCATAGTAGACTGAntisense
0.73 39.55 5.75 Uncharacterized proteinProbable WRKY transcription factor 70-like
M. truncatulaG.max
332453886357506690356532150
US83 CATGTTGTTCGACAGAAGTAAACAG 0.73 39.55 5.75
US84 CATGTTTTAAGAATTTTGTAATATT 0.73 39.55 5.75
US85 CATGAAACATTCAGAGAAACCTTAAAntisenseSee tag US41
0.00 26.37 5.72 Glucan endo-1.3-beta-glucosidaseBeta-1.3-glucanase
M. truncatulaL. culinaris
332435957377676391357448996409034123
US86 CATGACCGCATCCCAGCAGTTTTTT 0.00 26.37 5.72
US87 CATGAGTTGTTTGAACCTTATTTTT 0.00 26.37 5.72
US88 CATGATCCAATTCGTTTTAACTCCTAntisense
0.00 26.37 5.72 NAC domain protein NAC2NAC domain protein (NAC32)
M. truncatulaG. max
332453364377677033354992036356512865
US89 CATGATGTCTTGAACCTTAGGGTTT 0.00 26.37 5.72 Aquaporin TIP2-3 Tonoplast intrinsic protein (TIP)
M. truncatulaG.max
377671372357482078268589179
US90 CATGATTTATTTTTGGAGGTCATTT 0.00 26.37 5.72 Hypothetical protein Uncharacterized protein DUF 3411
M. truncatulaG. maxBLASTP
332432444332437635357506724356532124
US91 CATGCATACGCATTCAATATCTGTTAntisense
0.00 26.37 5.72 40S ribosomal protein S3a 40S ribosomal protein S3a-like
M. truncatulaG. max
377671460377671265358348321356535984
US92 CATGCATACTATTTATTACATTAAG 0.00 26.37 5.72 60S ribosomal protein L37a-like Ribosomal protein L43A family
G. maxBLASTP
377671337332435152356520741
US93 CATGCTATTTTATTTATTGATTTGA 0.00 26.37 5.72
US94 CATGGTCTTGCAGCTCGAGGCTTTC 0.00 26.37 5.72 Uncharacterized proteinCoa1 Superfamily. TIM21
G. maxBLASTP
332435570377674049356509095
US95 CATGTACTTCCTTTATACAAAGTTG 0.00 26.37 5.72
US96 CATGTATAAACTTTCATATTACAGA 0.00 26.37 5.72 Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit STT3ADolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3-like
M. truncatulaG.max
377679038332435653357444874356558901
US97 CATGTTACAATTATACCCTTTTCTT 0.00 26.37 5.72
US98 CATGTTTGAGTGATACCAACTGTGC 0.00 26.37 5.72 Defensin Protease inhibitor
M. truncatulaG.max
332444972358345085351723766
US99 CATGTTAGTGTTTTTTTCAGTGTTT 1.47 72.51 5.62
US100 CATGTTTCTCCTTTAATAATTTGTG 1.47 72.51 5.62 Glutathione S-transferase GST M. truncatula 377673367357505812357505814
US101 CATGATACATTATAGCTATAGACAA 3.67 171.38 5.54 Alkaline ceramidaseAlkaline ceramidase 3-like
M. truncatulaG. max
332434268357480450363806789
US102 CATGCATAACTGAGGAAACTAAAGA 1.47 65.92 5.49
US103 CATGAAGGTATTTTTACATTTATAT 0.73 32.96 5.49
US104 CATGCAAAGATAAAACTGATGGGCC 0.73 32.96 5.49
US105 CATGCAGTTATAGATTTATGATTTG 0.73 32.96 5.49
US106 CATGGAAATTCCTCTTAATGTTGAG 0.73 32.96 5.49
US107 CATGTAAGTGAGTTTCATTTCACTTAntisense
0.73 32.96 5.49 Beta-glucosidase G3 Cyanogenic beta-glucosidase (linamarase) Beta-glucosidase 12-like
M. truncatulaT. repensG. max
33244938515863490121952356541841
US108 CATGTGCAAGTAGTTTGAAAGGCTA 0.73 32.96 5.49
US109 CATGTTCAATTTTGATTCATTTATT 0.73 32.96 5.49
US110 CATGAATGGGAAAATGAAACTTGTA 0.00 19.78 5.31
US111 CATGATGGAATGTTTGAGGGTTTTG 0.00 19.78 5.31
US112 CATGATTATATCATATCATATTCTA 0.00 19.78 5.31
US113 CATGCTGCTGAGAGAAAGTTGTGTT 0.00 19.78 5.31
US114 CATGTATTTGCCTTTCAAACCCCCC 0.00 19.78 5.31
US115 CATGTGCTGCCGTTGTTTGCATAAA 0.00 19.78 5.31
US116 CATGTGTGGCCTTGTTGTTTTTCCC 0.00 19.78 5.31 PsENOD12B gene for early nodulin 12B 20712587508169083
US117 CATGTTAATGAATTTTCATACCACC 0.00 19.78 5.31
US118 CATGTTCGTTCTCTGAGTTTTCTTC 0.00 19.78 5.31
US119 CATGGTTTAGCGTTTTAAGTGAGCT 1.47 52.73 5.17 FGFR1 oncogene partnerUncharacterized mRNA
M. truncatulaG. max
377672183332431931357445054402794555
US120 CATGTAGCTAAGTGATTTACTCTTG 1.47 52.73 5.17
US121 CATGAAAGTAATATAATATACAAAT 0.73 26.37 5.17
US122 CATGAGAAAATCAATTAGGGCTGAG 0.73 26.37 5.17
US123 CATGATATCTGCCAATTATCTACTCAntisenseSee tag UR225
0.73 26.37 5.17 Unknown mRNAUncharacterizedRibosomal S10 Superfamily
M. truncatulaG. maxBLASTP
332432747377672855351722900388513318
US124 CATGATTATTCAGTTATTGATGCAG 0.73 26.37 5.17
US125 CATGCGTTGAAAGCGTTGGATCGGC 0.73 26.37 5.17 Phosphate metabolism proteinHaloacid dehalogenase-like hydrolases
M. truncatulaBLASTP
332438304377671317332444999357444254
US126 CATGGTGAGCTTATCATCACATAAT 0.73 26.37 5.17
US127 CATGTACATATTATTTTTAAAGGCT 0.73 26.37 5.17
US128 CATGTACGCATTTACTTGCTTTCTT 0.73 26.37 5.17
US129 CATGTTGCATACTGTTATGGAAATG 0.73 26.37 5.17
US130 CATGTTTAAAGTGTTTGACGCACAG 0.73 26.37 5.17 Monosaccharide-sensing protein Monosaccharide-sensing protein 2-like
M. truncatulaG. max
377673072357467166356508503
US131 CATGTTTAGTAGGACTTTATTATCA 0.73 26.37 5.17
US132 CATGTGGAACTATATGTACTATCTT 34.53 1173.31 5.09 Luminal-binding protein 4-like G. max 377671830356513250
US133 CATGTACCCATATGAAATGACACAG 5.14 171.38 5.06
US134 CATGATTCCCAAACATATAAATCAAAntisense
3.67 118.65 5.01 Unknown mRNA CASP-like protein 7TIGR01569
M. truncatulaG. maxBLASTP
332433255377673289388493015402743711
US135 CATGGTTGCAGGATTCAAGGTTCAG 1.47 46.14 4.97
US136 CATGAGATATAAGATGAATTCAAAT 3.67 112.06 4.93
US137 CATGAGTTTTGACTTGGTGATAAGA 2.94 85.69 4.87
US138 CATGAACACCCACATCTGTCCAGAA 1.47 39.55 4.75 Hypothetical protein Inactive poly [ADP-ribose] polymerase RCD1-like RCD1-SRO-TAF4 (RST) plant domain
M. truncatulaG. maxBLASTP
377678886332432190357485538356496242
US139 CATGAGGATTAAAATGTTGAGATGT 1.47 39.55 4.75
US140 CATGCCGATAAAGTAGGAACCAAAG 1.47 39.55 4.75
US141 CATGCTGACCCTCATCCTGGAAATA 1.47 39.55 4.75 ABC transporter-like proteinUncharacterized proteinABC1 family
M. truncatulaG. maxBLASTP
377683301357519622356509049
US142 CATGCTGAGTTTGAGATCCTCTTCT 1.47 39.55 4.75 Hypothetical protein Uncharacterized protein
M. truncatulaG. max
332437195377673868357460608356569925
US143 CATGTCTGCTAAATTGTAAAGGCTG 1.47 39.55 4.75
US144 CATGTTATGTTAGGTACGTATCGAA 1.47 39.55 4.75
US145 CATGCATTGAGAACATCACATTGATAntisense
2.20 59.32 4.75 Phenylalanine ammonia-lyase Putative phenylalanine ammonia lyase
M. truncatulaT. pratense
33243376735744038684468337
US146 CATGAAGCGCTTGAAACTATCTACA 0.73 19.78 4.75
US147 CATGAATAAAAGATGATTATTATTT 0.73 19.78 4.75
US148 CATGAATGTTAAGAGTGTTCCAGCC 0.73 19.78 4.75
US149 CATGAGGATAAAGCTTAGAGCATTT 0.73 19.78 4.75
US150 CATGATAGTGAAACTCACAATTTTT 0.73 19.78 4.75
US151 CATGATGGTCCAAAATTTAATTGAC 0.73 19.78 4.75
US152 CATGCAGAACCCAGCAAAAATGTTG 0.73 19.78 4.75 Activating signal cointegrator Activating signal cointegrator 1-like
M. truncatulaG. max
377675907357477562356562831
US153 CATGCCGGCGGATAAGAAAGCGAAG 0.73 19.78 4.75 GDP-fucose protein O-fucosyltransferaseDUF246 domain-containing protein
M. truncatulaG. max
377676207332430551356521786
US154 CATGCTGAAACAACAGAAGATGCAA 0.73 19.78 4.75 Pyruvate kinase Pyruvate kinase. cytosolic isozyme-like
M. truncatulaG. max
377676158332433474357475082356521617
US155 CATGCTGCTGATCCCAGCAGTTTTT 0.73 19.78 4.75
US156 CATGCTGCTGCCCCCCCCTTTTTTT 0.73 19.78 4.75
US157 CATGGTAGTATGAACATTGTGATTC 0.73 19.78 4.75 Structural maintenance of chromosomes protein 2-1-likeStructural maintenance of chromosomes (SMC) protein
G. maxBLASTP
332466953356548918
US158 CATGTAAACTATGAATAAGAGGTAG 0.73 19.78 4.75
US159 CATGTAGCTTATGATTGGAAATTAG 0.73 19.78 4.75
US160 CATGTATCATTATTGCAAACTATGT 0.73 19.78 4.75
US161 CATGTCTATCCATTCTTCAATTTAG 0.73 19.78 4.75
US162 CATGTGGATATGAAGTGTGATGAGA 0.73 19.78 4.75
US163 CATGTTAAAAATTTATGGATTTCCT 0.73 19.78 4.75
US164 CATGTTAACTATTCACTGAATACAA 0.73 19.78 4.75
US165 CATGTTGGTGTTTATAATAAAGGGT 0.73 19.78 4.75 Protein pns1? M. truncatula 332482174357508860
US166 CATGTGTCAGATTGTTATTATGTGT 4.41 112.06 4.67 Peroxidase PsPOX29Peroxidase
M.truncatula 62909962332429816357448430
US167 CATGTATGCTGTACAAGTAAAATGA 7.35 184.57 4.65 Unknown mRNAPutative RNA-binding protein ylmH-likeRNA-binding domain also found in stress proteins
M. truncatulaG.maxBLASTP
332448400217074321402794940
US168 CATGTATAGCTTTAATCTTAAAGGC 8.82 210.93 4.58 Small GTP-binding protein Ras-related protein RABB1b-likeRab GTPase family 2.
M. truncatulaG. maxBLASTP
332435193377674230357496970356570242
US169 CATGGATAGATTAATGTGTTCATTC 2.20 52.73 4.58
US170 CATGGTTATGAGGTTAAACTTGCTTAntisense
2.20 52.73 4.58 3-ketoacyl-CoA synthase 3-ketoacyl-CoA synthase 21-like
M. truncatulaG. max.
377675015332433237357472606356536509
US171 CATGTAACGGTTTTATATGAACAAT 2.20 52.73 4.58 AP2-like ethylene-responsive transcription factor At1g16060-like G. max 332440842356522261
US172 CATGCCTTTGAGGCGTTCAAAATAG 3.67 85.69 4.54 Eukaryotic translation initiation factor 2 subunit alphaEukaryotic translation initiation factor 2 subunit alpha-like
M. truncatulaG.max
377674347332432710357461372356539998
US173 CATGACATCTTATTATGATGCTTGC 1.47 32.96 4.49 RNA-binding protein with multiple splicing Uncharacterized proteinRNA Recognition Motif Superfamily
M. truncatulaG. max
377674375357467714356526325
US174 CATGCAAAAGAGGTTAGAAAAAGTT 1.47 32.96 4.49
US175 CATGCAATCATTTGATGAATAAGAG 1.47 32.96 4.49
US176 CATGGCGTGCTATTTTGCAATCAAT 1.47 32.96 4.49
US177 CATGTGAGTGCTTTTTTTTCTTCTT 16.16 362.54 4.49
US178 CATGATTAATAAATTTGCAACCATC 2.94 65.92 4.49
US179 CATGGACGCGTTAGGGTTTTGGGGG 2.94 65.92 4.49 Frigida-like proteinUncharacterized protein
M. truncatulaG. max
377673340401710191356575850
US180 CATGTTTGTTTTCCACTTGACCAAC 5.14 112.06 4.45
US181 CATGAATATTTTGAAATGGATGTGA 2.20 46.14 4.39 Cytochrome b5 M. truncatula 377673139332435271357514460
US182 CATGAATTGACGGAACAAGCAAATGSee tag DS66, US194, UR8, UR241 and UR250
2.20 46.14 4.39 Putative glycine rich protein precursor (grp1 gene)Cold and drought-regulated protein CORA
M. truncatula 37767280311441539357493030
US183 CATGCGGGATACTGATATCTATCTT 2.20 46.14 4.39
US184 CATGTCTTTTCCAACCATTTGCTTG 19.10 395.50 4.37 Homeobox-leucine zipper protein ATHB-7 Homeobox-leucine zipper protein ATHB-7-like
M. truncatulaG.max
332454885357464078403043675
US185 CATGTTAATCAATTCTTTAATGACT 45.55 936.01 4.36
US186 CATGCTGCTGCCGCATCCCAGCAGT 14.69 296.62 4.34
US187 CATGAGAAGGAGTGGAAATTAGGAG 2.94 59.32 4.34 Mitochondrial inner membrane protein OXA1 Glycine max mitochondrial inner membrane protein OXA1-like
M. truncatulaG.max
377681704332446173357504210
US188 CATGCCTTCATAGGAGAGTGCGCAA 2.94 59.32 4.34 Pleiotropic drug resistance proteinPleiotropic drug resistance protein 1-like
M. truncatulaG. max
377674673357455074356555824
US189 CATGATTTGCTAAGAGCCAATTGTT 15.43 283.44 4.20 GTP-binding protein Ras-related protein Rab11B
M. truncatula 377683037303739358343343
US190 CATGAATCTCCATTGTGAAAAACAC 1.47 26.37 4.17
US191 CATGATAATCTTGAAGATTATGATG 1.47 26.37 4.17
US192 CATGATTAGATATTTGGATTTTGGT 1.47 26.37 4.17
US193 CATGATTCCTTTCTTCTAAGCAATT 1.47 26.37 4.17
US194 CATGGTGGTGTTTCCAACAATGAGGSee tags US182,DS66, UR8, UR241 and UR250
1.47 26.37 4.17 Glycine rich protein precursor (grp1 gene)??Cold and drought-regulated protein CORA??Glycine rich protein family
M. truncatulaBLASTP
332441505332445743332445373114415397357493052
US195 CATGTCTTAGTATTCATTTTTGTTT 1.47 26.37 4.17 LRR receptor-like kinase family proteinGlycine max probable inactive receptor kinaseLRR-RI Protein tyrosine kynase
M. truncatulaG. maxBLASTP
332456426377683509357465600356509744
US196 CATGAATGTTGTAGTCTTGTTTGTC 2.20 39.55 4.17
US197 CATGCAATAAATACAGGACTTGTCT 2.20 39.55 4.17
US198 CATGTGCACTCAATATATATTAGTG 2.20 39.55 4.17
US199 CATGAAGTCATTTGTTAAATGATCT 4.41 72.51 4.041 Fold change was calculated as log2 (Normalized TAG copy number/ Normalized TAG copy number control), when this last value was 0.0 was substituted by 0.5.
Supplementary Table 7. Underrepresented deepSuperSAGE tags (DS) from pea ZP0104 leaves infected with Pseudomonas syringae pv. pisi race 6 (strain P123- susceptible response).
TAG sequence Normalized TAG copy
number control
Normalized TAG copy
number
Fold change1
Species Gene identification number (gi|)
DS1 CATGAATGTTATCAGATCCATTGAASee tag DS8
1771.28 0.00 -11.79 Chlorophyll a/b-binding protein (Cab9) geneChlorophyll a/b-binding protein
M. truncatula 169060332445676357496386
DS2 CATGTTTGTATGCACCTGAATGTTA 1717.65 0.00 -11.75
DS3 CATGAGAAACTATCTTCTACAGTCT 465.78 0.00 -9.86 Uncharacterized protein G. max 332450200356518053
DS4 CATGAGTGAAATTAAAATATTACTA 430.51 0.00 -9.75
DS5 CATGTTTTTTTTTAAAAAAAAAAAA 407.00 0.00 -9.67
DS6 CATGTGATGTGAATGAGGGGTTGGA 390.11 0.00 -9.61 Hypothetical proteinUncharacterized proteinRHDO Superfamily
M. truncatulaG. maxBLASTP
377672658332431450357509872356504844
DS7 CATGAGGCACATTAGTCAAGAATAA 351.17 0.00 -9.46 Gibberellin 20-oxidase 18481452108427
DS8 CATGTAGGGTTGCATTTTTTCATTGSee tag DS1
291.66 0.00 -9.19 Chlorophyll a/b-binding protein gene?? 332447221222358326
DS9 CATGTAAGTGATATATATAGTACTA 282.11 0.00 -9.14 3-ketoacyl-CoA synthase3-ketoacyl-CoA synthase 6-like
M. truncatulaG. max
377673603332430649358346781356575545
DS10 CATGAATCAAGACGTGAGATATTGT 271.09 0.00 -9.08 Unknown mRNA Phosphatidylinositol-specific phospholipase C, X domain containing proteins found in plants
M. truncatulaBLASTP
377681319217072597
DS11 CATGTAATGTTAAACTTTTTTAGTT 267.42 0.00 -9.06 SOUL heme-binding family proteinHeme-binding protein 2-likeSOUL heme-binding protein
M. truncatulaG. maxBLASTP
332434233388493349356498207
DS12 CATGAATGTTATCAAAAAAAAAAAA 224.07 0.00 -8.81
DS13 CATGTACTATTTAGGTCGTGTTAGA 221.13 0.00 -8.79 Signal peptide peptidase A (SppA) 36 kDa type proteinProtease 4-like
M. truncatulaG. max
332437173357450792356508466
DS14 CATGGAGCTTCTTTTTGCATTAGCT 215.26 0.00 -8.75 Unknown mRNAUncharacterizedRibosomal L13 Superfamily
M. truncatulaG. maxBLASTP
377672252217071233210142926
DS15 CATGATGTTCTTACCTGTGCTGAGC 210.11 0.00 -8.72 Class1 chitinaseEndochitinase
M. truncatula 37051095332430157377671622357502782
DS16 CATGAGGAGCTATTCACTTTTTACT 202.03 0.00 -8.66 AB80 encoding major light-harvesting chlorophyll a/b-binding protein 332445549169052169054
DS17 CATGCAAAACCACCACCGTTCAAAA 199.83 0.00 -8.64 Photosystem II core complex proteins psbYPhotosystem II core complex proteins psbY
M. truncatulaG. max
332436309332445129377672067357463164356540202
DS18 CATGGTATTGTAGTAGGTACACCTG 196.16 0.00 -8.62 Uroporphyrinogen decarboxylaseUroporphyrinogen decarboxylase, chloroplastic-like
M. truncatulaG. max
377673951332430172357461510402794614
DS19 CATGAATGTTATCATATCAAAAAAA 177.05 0.00 -8.47
DS20 CATGTATTTTTAAATGTTAAGCAGA 177.05 0.00 -8.47 Homeobox protein Hox-C4 M. truncatula 332432160357446736
DS21 CATGAATGTTATCATAAAAAAAAAA 165.30 0.00 -8.37
DS22 CATGATTTATTGGAGTGGCAGGATA 164.56 0.00 -8.36 ADP,ATP carrier proteinADP,ATP carrier protein 1, mitochondrial-like
M. truncatulaG. max
377671858356525660357514852
DS23 CATGATTTGTTTAAACCAAGTAACA 164.56 0.00 -8.36 Lhcb3 gene for chlorophyll a/b-binding proteinChlorophyll a/b-binding protein
M. truncatula 14144806333243816020670357452426
DS24 CATGTTTATTTAAAAAATGTAGAAC 163.10 0.00 -8.35 Light induced-like proteinUncharacterized
M. truncatulaG. max
377674989332431903357447838351725182
DS25 CATGCAAGATTAATGTGATATCTTG 161.63 0.00 -8.34 Serine carboxypeptidase-like proteinSerine carboxypeptidase-like 27-like
M. truncatulaG. max
332437110357443344356533976
DS26 CATGTAAATTTAGATATAAGGGCTT 151.34 0.00 -8.24 Uncharacterized protein G. max 332430833356559178356529670
DS27 CATGTTACTTGGTCCATATTAGGTT 151.34 0.00 -8.24 RING-finger ubiquitin ligase E3 ubiquitin ligase BIG BROTHER-related-likeRING-finger
M. truncatulaG. maxBLASTP
377675210217075117356575433
DS28 CATGGATGCTTTACTTTTAAAAAAA 149.14 0.00 -8.22
DS29 CATGTAAGATTGGTGATGAAGGATT 143.99 0.00 -8.17 F-box/LRR-repeat proteinF-box/LRR-repeat protein 14-like
M. truncatulaG. max
332436300357458868356526240
DS30 CATGCATATGAGTTTGTACCAAAGA 141.79 0.00 -8.15 Carboxyl-terminal-processing proteaseCarboxyl-terminal-processing protease-like
M. truncatulaG. max
332456342357519224356512565
DS31 CATGAAAATTTTGAAACATTGTTGT 139.59 0.00 -8.13 Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like
G. max 332436446356530081
DS32 CATGTTTTCTTTGTCTCTACCTAAG 138.85 0.00 -8.12
DS33 CATGGATAATAAAAGGGGAAATGTT 136.65 0.00 -8.09
DS34 CATGATTTTATGACATAATGGGAAG 134.44 0.00 -8.07 Uncharacterized Helicase sen1 ¿? M. truncatula 377681380357513936
DS35 CATGTAAAGTTGTCTAGTCTATGTA 132.24 0.00 -8.05
DS36 CATGTATGGTAGGTTGTATTATCAG 131.51 0.00 -8.04 Hydroxymethylbilane synthasePorphobilinogen deaminase
M. truncatula 313723332430192357474092
DS37 CATGATTTATGTTAATATTTATGAG 130.77 0.00 -8.03 Root phototropism proteinRoot phototropism protein 2-like
M. truncatulaG. max
377679556332434459357460536356570016
DS38 CATGGAATTTATTAAGGTCTTCAAA 127.83 0.00 -8.00 Syntaxin-52Syntaxin-51-like
M. truncatulaG. max
377672964332430842357459802356567067
DS39 CATGGTGCCGCTTCTGTCAGGCTAT 124.89 0.00 -7.96 5'-adenylylsulfate reductase 3, chloroplastic-like5'-Adenylylsulfate (APS) reductase subfamily
G. maxBLASTP
377672623332434359356555675
DS40 CATGTGTATATGGTAACACAAAATA 121.95 0.00 -7.93 Pyrophosphatase ppaXPhosphatase YfbT-like
M. truncatulaG. max
332431823357520438356513396
DS41 CATGTGTGTTGGGTGGAATTTACGA 120.49 0.00 -7.91 Unknown mRNAUncharacterized
M. truncatulaG. max
377673410332431104351727518217075323
DS42 CATGGAAGGTGATAGTCCTGCAATC 119.02 0.00 -7.90 Unknown mRNAMitochondrial outer membrane protein porinPorin 3 Superfamily.
M. truncatulaG. maxBLASTP
332430331217073837356526889
DS43 CATGGTTACTAGCATTTGTTAAATA 116.81 0.00 -7.87 Omega-amidase NIT2Omega-amidase NIT2-like
M. truncatulaG. max
332430178357465810356514702
DS44 CATGCAAGACATTGGCGAAGAAGAT 115.34 0.00 -7.85 AUXIN SIGNALING F-BOXAUXIN SIGNALING F-BOX 3-like
M. truncatulaG. max
332434665377683207357508348356571614
DS45 CATGGATCTGATCTGATTGATACTA 113.87 0.00 -7.83
DS46 CATGGGGTTTATATGTGAGATATTT 113.14 0.00 -7.82 ADP-ribosylation factorADP-ribosylation factor 1-like
M. truncatulaG. max
332430338357479798358249125
DS47 CATGAGGCCTCTTAGCCACAACAAC 110.93 0.00 -7.79 UnknownUnknown
L. culinaris 377672382261232761268541692
DS48 CATGATCCAGCATTATAATTAATTG 108.00 0.00 -7.75 Hypothetical proteinUncharacterized
M. truncatulaG. max
332432202358344606402745652
DS49 CATGGTTCATATTTGCCTAGAAAGC 107.26 0.00 -7.74 Unknown mRNAUncharacterized protein
M. truncatulaG. max
377675529332447142388516550
DS50 CATGGATGTTTTCTTTTTTAAAAAA 103.59 0.00 -7.69
DS51 CATGGAATTTTGCATTTGGTTGTAA 99.91 0.00 -7.64
DS52 CATGCGATTCAGTCTCTGAGGCATA 99.18 0.00 -7.63 Chloroplast outer envelope protein 34Translocase of chloroplast M. truncatula
5101893293200357509072
DS53 CATGTACACAATTTGGTGTTTTGTT 98.45 0.00 -7.62
DS54 CATGTCCATCAAAGTGAACACCGTA 98.45 0.00 -7.62
DS55 CATGGATTTGGCAAAGTGAGCTATT 95.51 0.00 -7.58 Pre-mRNA branch site p14-like proteinPre-mRNA branch site p14-like protein-like
M. truncatulaG. max
377676069332431766357493882356501391
DS56 CATGCAAGTCAGCAGATTTACACCASee tag US65
90.36 0.00 -7.50 40S ribosomal protein S25-240S ribosomal protein S25-2-like
M. truncatulaG. max
332445414357473346356538746
DS57 CATGAATTATACGTACTAGTACACG 87.43 0.00 -7.45 O-acyltransferase WSD1O-acyltransferase WSD1-like
M. truncatulaG. max
332431878377675028356521456358343858
DS58 CATGCTGGAGCAAAGTTGGAAGGGC 87.43 0.00 -7.45 CBL-interacting serine/threonine-protein kinase 11-likeCBL-interacting protein kinases
G. maxBLASTP
332430197356566778388501773
DS59 CATGTCGTTGATCGATGTACAATTC 85.96 0.00 -7.43 Unknown mRNAPyrrolidone-carboxylate peptidase-like
M. truncatulaG. max
377677151332433155388506609403043534356524041
DS60 CATGCAAAATATGCTAGATGGATAA 85.22 0.00 -7.41
DS61 CATGCACAGGTTGATGGTTCAAAAA 85.22 0.00 -7.41 Type II chlorophyll a/b binding proteinChlorophyll a-b binding protein M. truncatula
332437456602358358346568
DS62 CATGAATTTTGGTTCAAAATGCACA 83.75 0.00 -7.39 ABC transporter B family member??ABC transporter B family member 26
M. truncatulaG. max
332448243357485676356497302
DS63 CATGCAGCCCCAAGCATTCAGTGAA 82.28 0.00 -7.36 Membrane-anchored ubiquitin-fold protein Membrane-anchored ubiquitin-fold protein 3-like
M. truncatulaG.max
377674414332434495357511158356505515
DS64 CATGATTGGAGCTTGGATAGTGTTT 80.81 0.00 -7.34 Hypothetical protein M. truncatula 332431904357518082
DS65 CATGTATGGACATTTTTATGATTAA 79.34 0.00 -7.31
DS66 CATGTGTAATATATCAAATATCACC 77.87 0.00 -7.28 Putative glycine rich protein precursorCold and drought-regulated protein CORA??
M. truncatula 90646300377672803332434153114415397357493030
DS67 CATGGCAGGATTGGAGCAGCAGAGT 77.14 0.00 -7.27 R2R3-MYB transcription factorMYB transcription factor MYB50
M. truncatulaG. max
332434078357482758351724602
DS68 CATGAAATAAATCAAGAATTTGCAG 76.41 0.00 -7.26 NADH-cytochrome b5 reductase-likeNADH-cytochrome b5 reductase-like
M. truncatulaG. max
332432659357477996402794696
DS69 CATGTCCTGACGCTATCTCGATTGT 75.67 0.00 -7.24 Hypothetical proteinUncharacterized proteinPlant-specific sub-family of Phospholipase A2
M. truncatulaG. maxBLASTP
332435836357448612356577338
DS70 CATGACAGAGCCACAGATTTTGAAA 74.94 0.00 -7.23 NADH-ubiquinone oxidoreductase 10.5 kDa subunitNADH dehydrogenase 1 alpha subcomplex subunit 2-like
M. truncatulaG.max
377673435332433069357448964356498716
DS71 CATGGAAGATGGTTTGCTGGAAAGA 74.94 0.00 -7.23 Unknown mRNARNA-binding protein 39-like
M. truncatulaG. max
332446040217074841356536385
DS72 CATGTTCCATTTTGTGTTTCAAGTT 74.94 0.00 -7.23
DS73 CATGCATGCTTGTATTAAATAATTA 73.47 0.00 -7.20 Translation factor SUI1-like proteinTranslation factor SUI1 homolog 2-like
M. truncatulaG. max
332441326332431504357494518356527055
DS74 CATGCTGAAAGGGGAGTCAATCAGA 73.47 0.00 -7.20 Alcohol dehydrogenase 1MG20 alcohol dehydrogenase (ADH1)
T. repensL. japonicus
33243631421950356582741
DS75 CATGTAACATAGTGTAGTTTTTCAA 72.00 0.00 -7.17 Pentatricopeptide repeat-containing protein G. max 332432593356575209
DS76 CATGCCTGCCAAACCTAGTCAGAAC 71.26 0.00 -7.16 Primary amine oxidase-like G. max 332430713356566001
DS77 CATGGTAGAGTTTAAGTGTTGTATA 69.06 0.00 -7.11 Unknown mRNAStem-specific protein TSJT1-likeGlutamine amidotransferases class-II Superfamily
M. truncatulaG. maxBLASTP
332437138377672097388519240403043698
DS78 CATGTCCTTGTTTTTTTGTTTTACA 69.06 0.00 -7.11
DS79 CATGAGCCACGGAGATCCAATCGCA 67.59 0.00 -7.08 Agenet domain containing proteinAgenet domain, Tudor-like domain present in plant sequences
M. truncatulaBLASTP
377681473332437655357482072
DS80 CATGTGTTTTGTTGAATTGAATTGT 66.85 0.00 -7.06 Unknown mRNAUncharacterized proteinDUF 525
M. truncatulaG. maxBLASTP
332433156388490689356562723
DS81 CATGTTGATACTAAGCTTCCAAATC 66.85 0.00 -7.06 gpa1 gene for glyceraldehyde-3-phosphate dehydrogenaseGlyceraldehyde-3-phosphate dehydrogenase A
M. truncatula 1215820728357508528
DS82 CATGAATTTTTTCCAATAAAAAAAA 66.12 0.00 -7.05
DS83 CATGCTTTGTGCTTTAGTCCTAACA 63.18 0.00 -6.98 Guanine nucleotide-binding protein subunit beta-likeGuanine nucleotide-binding protein subunit beta-like protein-like
M. truncatulaG. max
377671806332445027357521564402794593
DS84 CATGGTTTTGCTAGACGTGTGGTGG 61.71 0.00 -6.95 Apospory-associated proteinputative glucose-6-phosphate 1-epimerase-likeD-hexose-6-phosphate epimerase-like
M. truncatulaG. maxBLASTP
332430615377675044357483504356496742
DS85 CATGCAATGAACATCAGAAGGAATT 59.51 0.00 -6.90 1-deoxy-D-xylulose 5-phosphate reductoisomerase1-deoxy-D-xylulose 5-phosphate reductoisomerase
M. truncatulaBLASTP
377674233332430760217073573357477354
DS86 CATGTACTCAACAATATATTATGTA 58.77 0.00 -6.88 Flavoprotein wrbAFlavoprotein wrbA-like
M. truncatulaG.max
377680363332436995357490640356553061
DS87 CATGCCTTGGTTGCAGGGATCAAGA 58.04 0.00 -6.86 60S ribosomal protein L2760S ribosomal protein L27-like
M. truncatulaG. max
377671642332436896357445372356556156
DS88 CATGCTTCTTAAGGTGAACTTTGGT 58.04 0.00 -6.86 Nuclear transcription factor Y subunit C-9Nuclear transcription factor Y subunit C-9-like
M. truncatulaG. max
377680485332432699357441612356504055
DS89 CATGTAATTCAATATCAAATACATC 56.57 0.00 -6.82 Beta-glucosidase 18-like G. max 377677104332439716356546882
DS90 CATGTTCTTGCAAAGCTTGTTGAAG 55.10 0.00 -6.78 B3 domain-containing protein? G. max 332480096356555033
DS91 CATGCAATTTCTTTACTTATAAGAA 52.90 0.00 -6.73 Uridine-cytidine kinaseUridine kinase or uridine-cytidine kinase
M. truncatulaBLASTP
332436104377677663357460286
DS92 CATGAGGCTTTGGTTTGTATATTAT 52.16 0.00 -6.70
DS93 CATGGTGCATATTCCACTGGAATGA 52.16 0.00 -6.70 Polyamine oxidaseProbable polyamine oxidase 2
M. truncatulaG. max
332449088357494058356567481
DS94 CATGGTGGATGATGAAAGAAGTAAT 52.16 0.00 -6.70 Nodulin MtN21/EamA-like transporter family protein Auxin-induced protein 5NG4-likeNodulin MtN21 family
G. maxBLASTP
75860385332429921377672343403043672332437526
DS95 CATGGATGAAAAAAAAAAAAAAAAA 663.40 6.59 -6.65
DS96 CATGGCTTTGGTAGATGAGAGAATG 591.41 6.59 -6.49 Unknown mRNAUncharacterizedPhotosystem I reaction center subunit V (PsaG); Provisional
M. truncatulaG. maxBLASTP
377674732332445502217071581402767167
DS97 CATGAAATTTGAGGGCAAAAGAGAA 1954.21 26.37 -6.21 Chlorophyll a-b binding protein M. truncatula 377671975357468736
DS98 CATGCTTGGAATTTGAGTTGGAGAA 2768.95 39.55 -6.13 Ribulose 1,5 bisphosphate carboxylase 20856
DS99 CATGAAGGCTTTCGAAGACCTAAGG 386.43 6.59 -5.87 Protein CHUP1Protein CHUP1, chloroplastic-like
M. truncatulaG. max
332431946357488242356502486
DS100 CATGCTGGGCTTGGTATGGTATATA 697.20 13.18 -5.72 MLO-like proteinMLO-like protein 1-like
M. truncatulaG. max
332431255377672217357467572356507057
DS101 CATGCACAAACATTGTAATCAAAGA 346.03 6.59 -5.71 NAD(P)H-quinone oxidoreductase subunit NNAD(P)H-quinone oxidoreductase subunit N-like
M. truncatulaG. max
332431249357460592402794327
DS102 CATGACTGGCATAGGATAATATATG 283.58 6.59 -5.43 Long-chain-fatty-acid-CoA ligaseLong-chain-fatty-acid-CoA ligase
M. truncatulaG. max
377675377357469952356577565
DS103 CATGATGTATAGAAGAATAAATCTG 278.44 6.59 -5.40 Uncharacterized proteinACT domain-containing protein
G. maxBLASTP
332431483356509343
DS104 CATGTTTAAAAAAAAAAAAAAAAAA 1612.59 39.55 -5.35
DS105 CATGTTTTGGGAAAAAAAAAAAAAA 248.32 6.59 -5.24
DS106 CATGATTCGACGATTCTGCTTCAAA 222.60 6.59 -5.08 Phosphatidylinositol N-acetylglucosaminyltransferase subunit A M. truncatula 332439085358348006
DS107 CATGCACGATATTCATATTAATAAA 1553.08 46.14 -5.07 Xyloglucan endotransglucosylase/hydrolaseProbable xyloglucan endotransglucosylase/hydrolase protein 23-like
M. truncatulaG. max
377672460332431485357449736363808223
DS108 CATGGATTGGAAGAAGGGTGTGACA 2040.90 65.92 -4.95 Unknown mRNAPhotosystem I reaction center subunit III; Provisional
M. truncatulaBLASTP
377671244388507291
DS109 CATGGACTATCTATAAAGGTGGCTC 176.32 6.59 -4.74 Thioredoxin F isoformThioredoxin
M. truncatula 20906332429876357507806
DS110 CATGGTGTTTGTTGTTAACAACTAT 156.48 6.59 -4.57 Ras-like proteinRas-like protein
M.truncatulaBLASTP
377675071332432983357510454
DS111 CATGATCTACCAATGAGAATTGCAA 146.93 6.59 -4.48
DS112 CATGCCATTGCCACTAGGTTTCAAG 144.73 6.59 -4.46 Aconitate hydrataseAconitate hydratase, cytoplasmic-like
M. truncatulaG. max
332435252357453422356550019
DS113 CATGCATCAACAGATAATAATATAA 430.51 19.78 -4.44 aarF domain-containing protein kinaseuncharacterized proteinaarF multidomain protein kinase
M. truncatulaG. maxBLASTP
332436060357469818356495916
DS114 CATGGTTTGTCAAGGATGTAAATAT 142.53 6.59 -4.43 Hypothetical proteinUncharacterizedDUF 872
M. truncatulaG. maxBLASTP
332435614357447072402744992
DS115 CATGTGATCAATGTTCCAATATTAA 279.17 13.18 -4.40 Unknown mRNABidirectional sugar transporter SWEET13-likeSugar efflux transporter for intercellular exchange
M. truncatulaG. maxBLASTP
332433346377671833388494189356527764
DS116 CATGATCTGGCAATCAGCAAGTTTG 139.59 6.59 -4.40 THO complex subunitTHO complex subunit 4-like
M. truncatulaG. max
332446754357460874356569695
DS117 CATGTGCTGGCAAATGCATTATTAG 139.59 6.59 -4.40 Ftsh-like protease (ftsh11 gene)Zinc metalloprotease FTSH 11FtsH family
P.sativumG. maxBLASTP
50892958332430415356551133
DS118 CATGGTTTTTTCTGCTTGAAAAAAA 134.44 6.59 -4.35
DS119 CATGCATCTTTACAACTTCAATAAA 247.58 13.18 -4.23 AldolasePlastidic aldolase
T. pratense 33243906437767115316903838096040
DS120 CATGGAATTCTTTCTTTTTTTAAAA 247.58 13.18 -4.23
DS121 CATGGCAGATATGACTGAAGATCAA 121.22 6.59 -4.20 Phosphatidylinositol kinase family-like proteinProbable phosphatidylinositol 4-kinase type 2-beta
M. truncatulaG. max
332438253357516872356499945
DS122 CATGTGGTTTTGTAATCTATTTTAA 119.02 6.59 -4.17 Lactoylglutathione lyaseLactoylglutathione lyase-like
M. truncatulaG. max
377671666357480322356520070
DS123 CATGGACTTCTAATCCTCTCATTTT 231.42 13.18 -4.13 L-ascorbate peroxidase, cytosolic Cytosolic ascorbate peroxidase
M.truncatula 20647357472450
DS124 CATGCTTCTGTGCTAAAGAGAGAGA 113.87 6.59 -4.11 Phosphoenolpyruvate-carboxylasePhosphoenolpyruvate carboxylase
V .fabaG. max
3324302183776731853649777351725378
DS125 CATGTTGTTATTGATAGTAAAATAT 113.14 6.59 -4.10 Cytochrome P450 monooxygenaseCytochrome P450 89A2-like
M. truncatulaG. max
332438461377674063357446110356576122
DS126 CATGGGAGAAAGTTGAAGACAAATA 221.87 13.18 -4.07 Thylakoid membrane phosphoprotein 14 kDaThylakoid membrane phosphoprotein 14 kDa
M. truncatulaG. max
377672720357512646356559598
DS127 CATGATTTGTACATCAGGTATCTTA 110.20 6.59 -4.06 Type I inositol-1,4,5-trisphosphate 5-phosphataseType I inositol-1,4,5-trisphosphate 5-phosphatase 1-like
M. truncatulaG. max
332457423357443448356576090
DS128 CATGCATGTCATCATTGAGACAAACSee tag UR269
109.47 6.59 -4.05 Magnesium-protoporphyrin IX monomethyl esterMagnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
377673156332445045357509134356504618
DS129 CATGTTTTAGTTCAAAAAAAAAAAA 212.32 13.18 -4.01
1 Fold change was calculated as -log2 (Normalized TAG copy number control/ Normalized TAG copy number), when this last value was 0.0 was substituted by 0.5.