stanford bio-x interdisciplinary initiatives seed grants … · 2017-08-16 · 10 improving the ......
TRANSCRIPT
POSTER # TITLE AUTHORS
1 Antibodies Against Pf Phage Prevent Pseudomonas aeruginosa Wound
Infections by Promoting Phagocytosis
Michelle Bach1, Jolien Sweere1, Heather Ishak1,
Gina Suh1, Paul Bollyky1
Department of Medicine (Division of Infectious
Diseases1), Stanford University
2 Visualizing Neuronal Release of Sonic Hedgehog in Taste Receptor Cell
Regeneration
Ankit Baghel1, Wan-Jin Lu1, Philip Beachy1,2,3
Department of Biochemistry2, Institute for Stem
Cell Biology & Regenerative Medicine1, and
Howard Hughes Medical Institute3, Stanford
University
3 Deep Learning-Driven Protein-Protein Docking
Rishi Bedi1, Raphael Townshend1, João
Rodrigues2, Ron Dror1
Departments of Computer Science1 and Structural
Biology2, Stanford University
4 NIRS Neurofeedback for Improving Executive Function in Children with
ADH
Sarah Bell1, Hadi Hosseini1, Allan Reiss1
Department of Psychiatry & Behavioral
Sciences1, Stanford University
5 Elucidating the Biological Targets and Pathways of Novel Drugs in
Breast Cancer
Alisha Birk1, Catherine Going1, Vineet Kumar2,
Sanjay Malhotra2, Sharon Pitteri1
Departments of Radiology1 and Radiation
Oncology2, Stanford University
6 Early Steps Towards Automating Surgical Tasks Through Physics and
Soft-Body Simulation
Alexandra Bourdillon1, Animesh Garg2, Hanjay
Wang1, Jack Boyd1, Marco Pavone3, Joseph Woo1
Departments of Cardiothoracic Surgery1,
Computer Science2, and Aeronautics &
Astronautics3, Stanford University
7 MicroRNA Regulation of Neuronal Mitochondrial Function During
Oxidative Stress
Ryan Buchanan1, Anand Rao1, Georgia Kaidonis1,
Xiaoyun Sun1, Creed Stary1
Department of Anesthesia1, Stanford University
8 Dissecting Mechanisms of Drug Action by Structure-Function Mapping
with CRISPR Saturation Editing of Amino Acids
Tucker Burnett1, Kevin Roy2, Justin Smith2,3,
Maddison Morgan4, Julia Schulz5, Kevin Orsley6,
Lars Steinmetz2, Bob St. Onge3, Ron Davis2,3
Departments of Chemistry1, Genetics2,
Biochemistry3, and Bioengineering5, Stanford
University; Department of Biology4, Middlebury
College; Department of Biology6, Emmanuel
College
9 Targeting CREB for Novel AML Therapies
Tae-León Butler1,2, Justin Chan1,2, Hee-Don
Chae1,2, Kathleen Sakamoto1,2
Departments of Pediatrics1 and Medicine
(Division of Hematology & Oncology2), Stanford
University
10 Improving the Efficiency of Homologous Recombination in High-
Throughput CRISPR Editing in Saccharomyces cerevisiae
Julia Schulz1, Justin D. Smith2,3, Kevin Roy2,
Maddison Morgan4, Tucker Burnett5, Kevin
Orsley6, Sundari Suresh3, Angela Chu3, Ron
Davis2,3, Bob St. Onge3, Lars Steinmetz2
Departments of Bioengineering1, Genetics2,
Biochemistry3, and Chemistry5, Stanford
University; Department of Biology4, Middlebury
College; Department of Biology6, Emmanuel
College
11 Aging-Induced Neurodegeneration in the African Turquoise Killifish
Sharon Chen1, Andrew McKay1, Anne Brunet2
Departments of Biology1 and Genetics2, Stanford
University
Stanford Bio-X Interdisciplinary Initiatives Seed Grants Symposium
Poster Session August 24, 2017
12 Optimizing Super-Resolution Microscopy to Visualize Chromatin
Conformation of Cis-Regulatory Elements During Development
Zack Cinquini1, Leslie Mateo2, Alistair Boettiger2
Departments of Computer Science1 and
Developmental Biology2, Stanford University
13 The Consolidation of Memory: An Analysis of Cortical Circuits Involved
in Remote Memory Retrieval
Kendall Costello1, Laura DeNardo1, Cindy Liu1,
Eliza Adams1, Will Allen1, Liqun Luo1,2
Department of Biology1 and Howard Hughes
Medical Institute2, Stanford University
14 Automatic Phenotype Extraction from Medical Records
Cole A. Deisseroth1, Johannes Birgmeier1,
Jonathan A. Bernstein2, Gill Bejerano1
Departments of Developmental Biology1 and
Pediatrics2, Stanford University
15 Modulating Visual Sensitivity with Transcranial Electrical Stimulation
Jorge Delgado1, Guillaume Riesen1, Molly
Lucas2, Anthony Norcia1
Departments of Psychology1 and Neuroscience2,
Stanford University
16 Impact of Recurrent Seizures on Myelin Plasticity in a Rat Model of
Absence Epilepsy
Eleanor Frost1, Juliet Knowles1, Michelle Monje1
Department of Neurology & Neurological
Sciences1, Stanford University
17 Multimodal Imaging of the FMR1 Knockout Mouse: A Model of Fragile
X Syndrome
Scarlett Guo1, Samantha Reyes1, Bin Shen1,
Shawn Scatliffe1, Jun Hyung Park1, Zheng Miao1,
Jessa Castillo1, Sanaz Mohajeri1, Meng Gu1,
Christoph Leuze1, Frederick T. Chin1
Department of Radiology1, Stanford University
18 Genetic Determinants of Physical Activity
David Amar3, Daryl Waggott3, David Hsu1,3,
Anna Shcherbina2, Euan Ashley2,3 Departments of Biology1 and Medicine (Division
of Cardiovascular Medicine3) and Program in
Biomedical Informatics2, Stanford University
19 3D Printing of Vascular Architecture for Myocardial Tissue Constructs
James Hu1, Vahid Serpooshan1, Ken Hinh1, Ryan
Ferdowsian1, Sean Wu1,2,3
Stanford Cardiovascular Institute1, Institute for
Stem Cell Biology & Regenerative Medicine2,
and Department of Medicine (Division of
Cardiovascular Medicine3), Stanford University
20 Robust Cancer Image Feature Discovery through Novel Digital Phantoms
Akshay Jaggi1, Sebastian Echergay1, Shaimaa
Bakr2, Sandy Napel1
Departments of Radiology1 and Electrical
Engineering2, Stanford University
21 Single-Cell Ribo-Seq via Affinity Purification
Mika Jain1, Stephen Quake2
Departments of Computer Science1 and
Bioengineering2, Stanford University
22 Characterization of Novel Cell Lines Isolated from Human Brain
Arteriovenous Malformations (AVMs)
Ketan Jain-Poster1, Lorelei Shoemaker1, Breanna
Allen1, Steven Chang1
Department of Neurosurgery1, Stanford
University
23 SNARE Proteins as Antagonistic Regulators of KRAS
Tiffany Jiang1,2, Yonglu Che3, Paul Khavari4
Departments of Music1, Biology2, Cancer
Biology3, and Dermatology4, Stanford University
24 c-Jun, a New Player in Regulating Bone Mass, as a Clinical Target for
the Treatment of Osteopenic Disease
Yong-hun Kim1*, Tristan Lerbs1*, Camille Van
Neste1, Gerlinde Wernig1
(*equal contribution) Department of Pathology1,
Stanford University
25 Effects of Categorization on the Other-Race Effect
Hee Joo Ko1, Annabelle Tao1, Jennifer Yih1, Omri
Raccah,1 Josef Parvizi1
Department of Neurology & Neurological
Sciences1, Stanford University
26 Uncovering the Hidden Role of Ribosomes in Mammalian Development
Pallavi Krishnarao1,4, Gerald Tiu2, Maria Barna2,3
Departments of Biology1, Genetics2, and
Developmental Biology3 and Symbolic Systems
Program4, Stanford University
27 Identification of Novel Interactions Between Astrocytic Neurexin-1 and
Synaptic Ligands
Jason Li1,2, Justin Trotter3, Thomas Südhof3
Departments of Computer Science1, Biology2, and
Molecular & Cellular Physiology3, Stanford
University
28 A Novel Method to Fabricate 3D Gradient Hydrogels with Clinically
Relevant Dimensions for Cartilage Repair
Elisa Liu1, Danqing Zhu1, Fan Yang1, 2
Departments of Bioengineering1 and Orthopaedic
Surgery2, Stanford University
29 Discovering Agonist Nanobodies to Muscle Stem Cell GPCRS for Use as
Therapeutic Biologics
Helen Liu1,2,3, David M. Burns1,2,3, Helen Blau1,2,3
Baxter Laboratory for Stem Cell Biology1,
Department of Microbiology & Immunology2,
and Institute for Stem Cell Biology &
Regenerative Medicine3, Stanford University
30 Validation Studies of Live Cell Array-Derived Markers to Identify
Cancer Stem Cells in GBM
Cindy Liu1, Hai Li1, Stephen Skirboll1
Department of Neurosurgery1, Stanford
University
31 Investigating the Role of Gpr126 and cAMP in Schwann Cells
Hannah Llorin1, Mariapaola Sidoli1, William
Talbot1
Department of Developmental Biology1, Stanford
University
32 Patient-Specific Blood Flow Simulations of Kawasaki Disease for
Thrombotic Risk Stratification
Alexander Lu1, Noelia G. Grande2, Alison L.
Marsden3,4,5
Departments of Mechanical Engineering2,
Bioengineering3, Cardiology (Division of
Pediatric Cardiology5), Institute for
Computational & Mathematical Engineering4, and
Biomedical Computation Program1, Stanford
University
33 Examining Arrhythmogenic Indicators: Advanced Portable Telemetry for
Monitoring Post-Operational Atrial Fibrillation
Jonathan Jia-An Mak1, Cody Carlton2, Miguel
Rodrigo3, Joy Aparicio Valenzuela4, Xinyuan
Zhang4, Patrick D. Loftus4, Anson Lee4
Departments of Electrical Engineering1,
Computational Biology2, Cardiovascular
Medicine3, and Cardiothoracic Surgery4, Stanford
University
34 Investigating the Role of CDPC1 and CD47 in Metastatic Prostate
Cancer Immune Evasion and Tumorigenesis
Anoop Manjunath1, Gunsagar S. Gulati2, Rosalynd
Upton2, Elly Seo3, Owen Marecic3, Michael
Lopez3, Jun Seita4, Debashis Sahoo5, Anne
Leyrat6, Michael Gonzales6, Norma Neff7,
Sopheak Sim4, Stephen Quake7, Michael T.
Longaker3, Charles K. F. Chan3, Irving L.
Weissman8,9 Departments of Biology1, Cancer Biology2,
Surgery3, Bioengineering7, Pathology8, and
Developmental Biology9 and Institute for Stem
Cell Biology & Regenerative Medicine4, Stanford
University; Department of Pediatrics5, University
of California, San Diego; Fluidigm Corporation6
35 Effect of Intranasal Oxytocin on Contagious Response to Yawning and
Laughter in Children with Autism
Michael G. Mariscal1, Sophie M. Rose1, Robin A.
Libove2, Antonio Y. Hardan2, Karen J. Parker2
Departments of Human Biology1 and Psychiatry
& Behavioral Sciences2, Stanford University
36 Divided Attention’s Effect on Flexible Prospection During Navigation
Sarah Matsunaga1, Stephanie Gagnon2, Thackery
Brown3, Anthony Wagner2
Departments of Human Biology1 and
Psychology2, Stanford University; School of
Psychology3, Georgia Institute of Technology
37 Localizing Origins of the Essential Tremor Phenotype in a Novel Mouse
Model
Max Melin1, Mu Zhou1, Thomas C. Sudhof1,2,3
Departments of Molecular & Cellular
Physiology1, Neurology2, and Psychiatry &
Behavioral Sciences3, Stanford University
38 Determining the Role of VCAM1+ Brain Endothelial Cells in Mediating
Neuroinflammation and Brain Aging
Taylor Merkel1, Hanadie Yousef1, Davis Lee2,
Tony Wyss-Coray1,2
Department of Neurology & Neurological
Sciences1, Stanford University; VA Palo Alto
Health Care System2, Palo Alto
39 Characterization of the p53 Tumor Suppressor Protein-Protein
Interactions Identified by Affinity Purification and Mass Spectrometry
Clare Moffatt1, Nitin Raj1, Nancie Moonie2, Janos
Demeter2, Ahlima Roumane1, Sara Sakowitz1,
Peter Jackson2, Laura Attardi1
Departments of Radiation Oncology1 and
Microbiology & Immunology2, Stanford
University
40 Novel Parallel Computing Methods for Fitting Neuronal Network Models
to Experimental Data
Grace Ng1, Aaron Milstein1, Ivan Raikov1, Ivan
Soltesz1
Department of Neurosurgery1, Stanford
University
41 Appropriation of Tissue Renewal Signals Drives Development of
Intestinal Stem Cell Adenomas
Sang Ngo1, Jackson Liang2, Lucy O’Brien1
Department of Molecular & Cellular Physiology1,
Stanford University; Genentech, Inc.2
42 Human Chromatin Reorganization Using a CRISPR/dCas9-Based
Dimerization System
Cindy Nguyen1, Haifeng Wang1, Stanley Qi1
Department of Bioengineering1, Stanford
University
43 Sex Differences in White Matter Tract Development Across Puberty
Kira Oskirko1, Tiffany Ho1, Natalie Colich1, Ian
Gotlib1
Department of Psychology1, Stanford University
44 Generating in vitro Models of HER2 Positive Gastric Cancer from Patient
Derived Normal Tissue
Enoch Park1, Amanda Mah1, Calvin Kuo1
Department of Hematology1, Stanford University
45 Understanding the Roles of AP2A and P63 in Guiding Non-Neural
Ectoderm Cell Commitment
Jennifer Parker1, Jillian Pattison2, Jessica
Torkelson2, Sandra Carlos2, Anthony Oro2
Department of Biology1 and Dermatology2,
Stanford University
46 The Effect of Augmented Reality on Gait in Parkinson’s Disease
Jordan Parker1, Johanna O’Day2, Russell
Mendonca1, Chioma Anidi1, Helen Bronte-
Stewart1
Departments of Neurology & Neurological
Sciences1 and Bioengineering2, Stanford
University
47 The Effects of the Heterozygous 16p11.2 Deletion on Cell Proliferation
in the Embryonic Brain
Tess Rinaldo1, Brooke Babineau1, Aditi Narayan1,
Michelle Kielhold1, Amy Moon1, Theo Palmer1
Department of Neurosurgery1, Stanford
University
48 Photogrammetry for Morphological Analysis of African Cichlids
Maricela Sistos1, Sebastian Alvarado1, Russell
Fernald1
Department of Biology1, Stanford University
49 Project SERVE: An Insomnia Clinical Trial for Military Veterans
Gia Paige Soles1,2, Alan F. Schatzberg1, Steven E.
Lindley3, Rebecca Ann Bernert1,2
Department of Psychiatry & Behavioral Sciences1
and Suicide Prevention Research Laboratory2,
Stanford University; VA Palo Alto Health Care
System3, Menlo Park Division
50 The Role of GCNT1 in Prostate Cancer Development
Austin Su3, En-Chi Hsu1, Meghan Rice1, Mark
Buckup3, Rosalie Nolley2, James Brooks2, Donna
Peehl2, Tanya Stoyanova1
Departments of Radiology1, Urology2, and
Biology3, Stanford University
51 Activity-Dependent Investigation of Insular Cortex Circuitry Dynamics
Daniel Tang1, Brian Hsueh3,4, Li Ye2,5, Josh
Jennings1, Karl Deisseroth1,2,5
Departments of Bioengineering1 and Psychiatry &
Behavioral Sciences2, Neurosciences Program3,
Medical Scientist Training Program4, and Howard
Hughes Medical Institute5, Stanford University
52 Genetic and Functional Dissection of Neural Circuits: Decoding
Motivational Drives
Nicole Sabina Ticea1, Ethan Richman2, Karl
Deisseroth1,3, Liqun Luo4
Departments of Bioengineering1, Psychiatry &
Behavioural Sciences3, and Biology4 and
Neurosciences Program2, Stanford University
53 Inhibition of the Ribosomal S6 Kinase Causes Cell Cycle Arrest and
Apoptosis in Acute Myeloid Leukemia Cells
Bruce Tiu1, Hee-Don Chae1, Ritika Dutta1,
Kathleen Sakamoto1
Department of Pediatrics1, Stanford University
54 The Role of Reactive Astrocytes in the Surrounding Microenvironment
of Brain Metastases
Kevin Tran1, Sophia Chernikova1, Ian Connolly1,
Eli Johnson1, Bina Kakusa1, Lina Khoeur1,
Yingmei Li1, Dina Polyak1, Melanie G. Hayden
Gephart1
Department of Neurosurgery1, Stanford
University
55 Synthesis of Solvatochromic Probes to Label the Mycobacterial Cell
Wall
Ashley Utz1, Samantha G. L. Keyser2,4, Mireille
Kamariza1, Aidan Pezacki3,4, Carolyn R.
Bertozzi4,5
Departments of Biology1 and Chemistry4 and
Howard Hughes Medical Institute5, Stanford
University; Department of Chemistry2, University
of California, Berkeley; Department of Chemistry
& Biomolecular Sciences3, University of Ottawa,
Canada
56 Effects of Tumor Irradiation on Circulating Macraophage Localization
Jonathan Wang1, Stavros Melemenidis1, Laura
Bronsart1, Luis Soto2, Ysaman Ahrari1, Edward
Graves1
Department of Radiation Oncology1 and Cancer
Biology2, Stanford University
57 Developmental Expression of the Non-Classical MHC1 Qa-1, a
Regulator of Visual Plasticity
Alan Y. Wei1, Ioana A. Marin1, Kylie S. Chew1,
Carla J. Shatz1,2
Departments of Biology1 and Neurobiology2,
Stanford University
58 Tissue-Restricted Redundancy of Adenylate Kinases 1 and 2 Explains
SCID-Phenotype in Reticular Dysgenesis (AK2 Deficiency)
Ashley Westerfield1, Avni Awani1, Katja
Weinacht1
Department of Pediatrics1, Stanford University
59 Understanding the Role of the Gene C2orf54 in the Epidermal
Differentiation Process
Kamina Wilkerson1, Angela Peralta1, Dane
Sessions1, Carolyn Lee1
Department of Dermatology1, Stanford University
60 How to Feed a Cancer Cell: The KRAS Gene and Macropinocytosis
David Wu1, Marcus Kelly1,2, Peter K. Jackson1,3
Departments of Immunology & Microbiology1
and Cancer Biology2 and Baxter Laboratory for
Stem Cell Biology3, Stanford University
61 T2, T2*, and T1ρ Variations of Cartilage Imaged in Four ex-vivo
Environments
Michelle Xiao1, Marianne S. Black1,2, Garry E.
Gold2,3, Brian A. Hargreaves2,3, Marc E.
Levenston1,2,3
Departments of Mechanical Engineering1,
Radiology2, and Bioengineering3, Stanford
University
62 Modeling Kinetics of GLP1R-Mediated Peptide-Based Drug Delivery
Benjamin Yeh1, Tim Horton2, Justin Annes3
Departments of Bioengineering1, Chemistry2, and
Medicine (Division of Endocrinology3), Stanford
University
63 Kinetics of Contrast Agents Extravasation Across the Blood Brain
Barrier After Focused Ultrasound Opening
Victoria Yuan1,2, Aurea Pascal-Tenorio1,2, Kim
Butts Pauly1,2
Department of Radiology1 and Radiological
Sciences Laboratory2, Stanford University
64 Investigating NAA10 Mutation-Based Cardiac Dysfunction Using
Human iPSC Disease Modeling
Sophia Zhang1, Ning Ma1, Joseph Wu1
Department of Medicine (Stanford Cardiovascular
Institute1), Stanford University
65
Multi-Scale Matrix Mechanics in Breast Cancer Models Revealed by
Dynamic Light Scattering Microrheology: At the Intersection of Biology
and Polymer Physics
Audrey Zhu1, Brad Krajina1, Sarah Heilshorn2
Departments of Chemical Engineering1 and
Materials Science & Engineering2, Stanford
University
66 Mechanisms of Generalist Host Range in the Ectomycorrhizal Symbiosis Laura Bogar1, Kabir Peay1
Department of Biology1, Stanford University
67 Discovery and Engineering of an Anti-Fungal Biosynthetic Pathway from
Edible Plants
Amy Calgaro-Kozina1, Elizabeth Sattely1
Department of Chemical Engineering1, Stanford
University
68 Telomere Shortening as a Hallmark of Lethal Dilated Cardiomyopathy
Alex C.Y. Chang1,2,4,5, Andrew C.H. Chang1,2,4,
Koki Sasagawa1,2,4,5, Anna Kirillova1,2,4,5, Ioannis
Karakikes3,5, Vittavat Termglinchan3,5, Haodi
Wu3,5, Alexandre Ribeiro5,6, Willis Su1,2,4, Edward
LaGory7, Amato Giaccia7, Beth Pruitt5,6, John W.
Day8, Joseph C. Wu3,5, Helen M. Blau1,5
Baxter Laboratory for Stem Cell Biology1,
Departments of Microbiology & Immunology2,
Medicine (Division of Cardiology3), Mechanical
Engineering6, Radiation Oncology (Division of
Radiation & Cancer Biology7), and Neurology8,
Institute for Stem Cell Biology & Regenerative
Medicine4, and Stanford Cardiovascular Institute5,
Stanford University
69 Hydroxyapatite Coated Microribbon-Based Hydrogels Induce Robust
Osteogenesis and Mineralization of Mesenchymal Stem Cells in 3D
Bogdan Conrad1, Xinming Tong2, Fan Yang2,3
Departments of Orthopaedic Surgery2 and
Bioengineering3 and Institute for Stem Cell
Biology & Regenerative Medicine1, Stanford
University
70 The Fatty Acid Elongase EloF Is a Major Driver in the Sexual Isolation
of Drosophila simulans and Drosophila sechellia
Peter Combs1, Joshua Krupp2, Neil Khosla1,
Dennis Bua1, Joel Levine2, Hunter Fraser1
Department of Biology1, Stanford University;
Department of Biology2, University of Toronto
71 Shape-Aware Spatio-Temporal Descriptors for Interaction Classification
Soeren Pirk1, Olga Diamanti1, Boris Thibert1,
Danfei Xu1, Leonidas Guibas1
Department of Computer Science1, Stanford
University
72 Stable Region Correspondences Between Non-Isometric Shapes
Vignesh Ganapathi-Subramanian1, Boris
Thibert2,4, Maks Ovsjanikov3, Leonidas J. Guibas2
Departments of Electrical Engineering1 and
Computer Science2, Stanford University; École
Polytechnique3, Université Paris-Saclay;
Université Grenoble Alpes4
73 Using Handheld Stereo Depth Cameras to Extend Medical Imaging for
Radiation Therapy Planning
Cesare Jenkins1,2, Shu-Jung Yu1, Lei Xing1
Departments of Radiation Oncology1 and
Mechanical Engineering2, Stanford University
74 Metabolomics and Transcriptomics Implicate Acetylenic Compounds in
Plant-Pathogen Interactions
Ju Eun Jeon1,2, Mary Beth Mudgett1, Elizabeth
Sattely2
Departments of Biology1 and Chemical
Engineering2, Stanford University
75 The Influence of Protein-Surfactant Interfacial Co-Adsorption on Thin
Film Drainage and Bubble Coalescence
Aadithya Kannan1, Ian C. Shieh2, Danielle L.
Leiske2, Nikhil Sethia1, Camila Kofman1, Gerald
G. Fuller1
Department of Chemical Engineering1, Stanford
University; Genentech Inc.2
76 Single-Cell Imaging Using Radioluminescence Microscopy Reveals
Unexpected Binding Pattern of [18F] HFB
Louise Kiru1, Tae Jin Kim1, Bin Shen2, Frederick
T. Chin2, Guillem Pratx1
Departments of Radiation Oncology1 and
Radiology2, Stanford University
77 Maintenance of Neural Progenitor Cell Stemness in 3D Hydrogels
Requires Matrix Remodeling
Christopher M. Madl1, Ruby E. Dewi2, Cong
Dinh2, Kyle J. Lampe2,3, Duong Nguyen4, Annika
Enejder4,5, Sarah C. Heilshorn2
Departments of Bioengineering1 and Materials
Science & Engineering2, Stanford University;
Department of Chemical Engineering3, University
of Virginia; Departments of Biology4 and
Biological Engineering5, Chalmers University of
Technology, Gothenburg Sweden
78 A Programmable Alternative Splicing Platform for Regulating Protein
Diversity
Melina Mathur1, Cameron Kim1, Sarah Munro2,
Christina D. Smolke1
Department of Bioengineering1, Stanford
University; National Institute of Standards &
Technology2, U.S. Department of Commerce
79 Inactivation and Transcriptional Response of Staphylococcus aureus to
Sunlight Under Oxic and Anoxic Conditions
Jill S. McClary1, Alexandria B. Boehm1
Department of Civil & Environmental
Engineering1, Stanford University
80 Charge-Altering Releasable Transporters (CARTs) for the Delivery and
Release of Messenger-RNA
Colin J. McKinlay1, Jessica R. Vargas1, Timothy
R. Blake1, Jonathan W. Hardy2,7, Masamitsu
Kanada2,7, Christopher H. Contag2,3,4,5,7, Paul A.
Wender1,6, Robert M. Waymouth1 Departments of Chemistry1, Pediatrics2,
Microbiology & Immunology3, Bioengineering4,
Radiology5, and Chemical & Systems Biology6
and Molecular Imaging Program at Stanford
(MIPS)7; Stanford University
81 Optical Control of Neural Ablation in Zebrafish - A Model for CNS
Injury Mechanisms
Karen Mruk1,2, Patrick A. Piza1, Mohammad A.
Alnaqib1, James K. Chen1,2
Departments of Chemical & Systems Biology1
and Developmental Biology2, Stanford University
82 Prostaglandin E2 Is Essential for Efficacious Skeletal Muscle Stem Cell
Function, Augmenting Regeneration and Strength
Adelaida R. Palla1,4,5,*, Andrew T.V. Ho1,4,5*,
Matthew R. Blake1,4,5, Nora D. Yucel1,4,5, Yu Xin
Wang1,4,5, Klas E.G. Magnusson1,2,4,5, Colin A.
Holbrook1,4,5, Peggy Kraft1,4,5, Scott L. Delp3,
Helen M. Blau1,4,5
(*equal contribution) Baxter Laboratory for Stem
Cell Biology1, Departments of Microbiology &
Immunology4 and Bioengineering3, and Institute
for Stem Cell Biology & Regenerative Medicine5,
Stanford University; Department of Signal
Processing2 (ACCESS Linnaeus Centre), KTH
Royal Institute of Technology, Sweden
83 Recurrent Architectures for Annotating Protein Secondary Structural
Elements
Christopher Probert1,2, Aaron Cravens3
Departments of Genetics1, Computer Science2,
and Bioengineering3, Stanford University
84 PointNet: Deep Learning on Point Sets for 3D Classification and
Segmentation
Charles Ruizhongtai Qi1, Hao Su2, Kaichun Mo2,
Leonidas J. Guibas2
Departments of Electrical Engineering1 and
Computer Science2, Stanford University
85 Tumor and Immune Cell Infiltration Are Enhanced by Irradiation of
Normal Tissues in Immunocompromised Mice
Marjan Rafat1, Todd A. Aguilera1, Marta Vilalta1,
Laura L. Bronsart1, Luis A. Soto1, Rie von
Eyben1, Amato J. Giaccia1, Edward E. Graves1
Department of Radiation Oncology1, Stanford
University
86 Using TMS-EEG to Understand the Cortical Circuit Dynamics in Stroke
Camarin Rolle1, Fiona Baumer2,3, Hersh Trivedi4,
Ayesha Nadiadwala4, Karen Monuszko4, Kacey
Berry2, Maarten Lansberg2, Marion Buckwalter2,
Amit Etkin4
Neurosciences Program1, Departments of
Neurology & Neurological Sciences2, Health
Research and Policy3, and Psychiatry &
Behavioral Science4, Stanford University
87 Competition-Colonization Tradeoffs Structure Microbial Diversity
Gabriel R. Smith1, Brian S. Steidinger1, Thomas
D. Bruns2, Kabir G. Peay1
Department of Biology1, Stanford University;
Department of Plant & Microbial Biology2,
University of California, Berkeley
88 Recurrent Neural Network Models to Quantitatively Predict RNA
Interactions
Michelle Wu1, Johan Andreasson2,3, Wipapat
Kladwang3, Will Greenleaf2, Rhiju Das3
Departments of Genetics2 and Biochemistry3 and
Program in Biomedical Informatics1, Stanford
University
89 Advancing RNA Device Engineering with Data-Rich Strategies and
Automation
Joy S. Xiang1, Brent Townshend1, Michaela
Hinks1, Gabriel Manzanarez1, Christina D.
Smolke1
Department of Bioengineering1, Stanford
University
90 Imaging the Cardiac Field Potential via Graphene Optoelectronics
Allister F. McGuire1, Halleh B. Balch2, Jason
Horng2, Hsin-Zon Tsai2, Patrick R. Forrester2,
Michael F. Crommie2, Feng Wang2, Bianxiao
Cui1
Department of Chemistry1, Stanford University;
Department of Physics2, University of California,
Berkeley
91 Tissue Architecture Coordinates Differentiation and Apical Emergence in
the Drosophila Midgut Epithelium
Paola Moreno-Roman1, Irina Kolotueva3, Bruno
Humbel3, Lucy Erin O’Brien2
Departments of Bioengineering1 and Molecular &
Cellular Physiology2, Stanford University; Electron Microscopy Facility3, Université de
Lausanne
92 Engineering Beneficial Plant-Microbe Interactions for Improved Crop
Drought Tolerance
Tim Schnabel1, Elizabeth Sattely2
Departments of Bioengineering1 and Chemical
Engineering2, Stanford University
93 Towards Engineered Plant-Microbe Symbioses
Mathias J. Voges1,2, Yang Bai3, Ruben G. Oter3,
Masayoshi Hashimoto3, Paul Schulze-Lefert3,
Elizabeth S. Sattely2
Departments of Bioengineering1 and Chemical
Engineering2, Stanford University; Department of
Plant Microbe Interactions3, Max Planck Institute
for Plant Breeding Research, Germany
94 Quantitative Contrast-Enhanced Optical Coherence Tomography
Yonatan Winetraub1,3,4,5, Elliott D. SoRelle1,3,5,
Orly Liba1,2,3,4, Adam de la Zerda1,2,3,4,5
Departments of Structural Biology1 and Electrical
Engineering2, Molecular Imaging Program at
Stanford (MIPS)3, Stanford Bio-X4, and
Biophysics Program5, Stanford University
95 Matrix Malleability Regulates Cancer Cell Migration Through Confining
Microenvironments
Katrina M. Wisdom1, Kolade Adebowale2, Rajiv
Desai3,5, Louis Hodgson4, Ovijit Chaudhuri1
Departments of Mechanical Engineering1 and
Chemical Engineering2, Stanford University;
Departments of Engineering5 and Applied
Sciences3, Harvard University; Gruss-Lipper
Biophotonics Center4, Albert Einstein College of
Medicine
96 Faster and More Accurate Cerebral Blood Flow (CBF) Estimation from
Arterial Spin Labeling (ASL) MRI Using Deep Learning
Enhao Gong1, Jia Guo2, John Pauly1, Greg
Zaharchuk2
Departments of Electrical Engineering1 and
Radiology2, Stanford University
97 High Intensity Focused Ultrasound Modeling for Transcranial Treatments
Steve Leung1, Taylor Webb2, Kim Butts Pauly3
Departments of Bioengineering1, Electrical
Engineering2, and Radiology3, Stanford
University
98 Convexity Properties of Artificial Neural Networks
Blaine Rister1, Daniel Rubin2,3,4
Departments of Electrical Engineering1,
Radiology2, Medicine (Division of Bioinformatics
Research3), and Biomedical Data Science4,
Stanford University
99 CD81: A Novel Lymphoma Therapeutic Target
Felipe Vences-Catalán1, Chiung-Chi Kuo1,
Ranjani Rajapaksa1, Caroline Duault1, Ron Levy1,
Shoshana Levy1
Department of Medicine (Division of Oncology1),
Stanford University
100 Integrated Molecular and Clinical Analysis for Understanding Human
Disease Relationships
Winston A. Haynes1,2, Rohit Vashisht1, Francesco
Vallania2, Charles Liu2, Gregory L. Gaskin1,
Erika Bongen2, Shane Lofgren1,2, Timothy E.
Sweeney1,2, Paul J. Utz3, Nigam H. Shah1*,
Purvesh Khatri1,2*
(*corresponding authors) Stanford Center for
Biomedical Informatics Research1 and Institute
for Immunity, Transplantation, & Infection2,
Stanford University
101 A Completely Novel Class of Intravenous Anesthetics without
Hemodynamic Sequelae: “Translating from in silico to Behavior”
Edward J. Bertaccini1,2, M. Frances Davies1,2, Yao
Li1, Yun Wu1, Eric R. Gross1, Noëlie S.J. Cayla1,
Beza A. Dagne1, M. Bruce MacIver1
Department of Anesthesiology, Perioperative &
Pain Medicine1, Stanford University; Department
of Veterans Affairs2, Palo Alto VA Health Care
System
102 Generation of EEG Oscillations of Neocortical Brain Slices
Noëlie S.J. Cayla1, Stephen W. Evans2, Beza A.
Dagne1, M. Bruce MacIver1,2
Department of Anesthesiology, Perioperative &
Pain Medicine1 and Neurosciences Progam2,
Stanford University
103 New Anesthetic Discovery: Towards a Safer ‘Etomidate’
Lawrence L. Fu1, Noëlie S. Cayla1, Beza A.
Dagne1, Timothy H. Li1, M. Frances Davies1,2,
Edward J. Bertaccini1,2, M. Bruce MacIver1
Department of Anesthesiology, Perioperative &
Pain Medicine1, Stanford University; Department
of Anesthesia2, VA Palo Alto Health Care System
104 Teasing Apart the Desired Effects of Anesthetics from Unwanted Side
Effects at GABAA Receptors
Noëlie S. Cayla1, Beza A. Dagne1, M. Frances
Davies1, M. Bruce MacIver1, Edward J.
Bertaccini1,2
Department of Anesthesiology, Perioperative &
Pain Medicine1, Stanford University; Department
of Anesthesia2, Palo Alto VA Health Care System
105 Epithelial Separation in an Oral Mouse Wound Model: A Theory for
Post-Tonsillectomy Secondary Hemorrhage
Daniel M. Beswick1, Chloe Santa Maria1, Noel F.
Ayoub1, Robson Capasso1, Peter Luke Santa
Maria1,2,3
Department of Otolaryngology, Head & Neck
Surgery1, Stanford University; Ear Sciences
Centre2, The University of Western Australia; Ear
Science Institute Australia3, Australia
106 Reduced BMPR2 Signaling Impairs Right Ventricular Heart Function
and Exaggerates Cardiac Fibrosis upon Chronic Pressure Overload
Mario Boehm1, Xuefei Tian1, Mingming Zhao2,
Svenja Dannewitz1, Kazuya Kuramoto1, Jerry
Kuang1, Sushma Reddy2, Daniel Bernstein2, Euan
Ashley3, Edda Spiekerkoetter1
Departments of Medicine (Divisions of
Pulmonary & Critical Care Medicine1 and
Cardiovascular Medicine3) and Pediatrics
(Division of Pediatric Cardiology2), Stanford
University
107 Enzastaurin Reverses Vascular Remodeling in Experimental Pulmonary
Hypertension by Targeting the Novel BMPR2 Modifier FHIT
Svenja Dannewitz Prosseda1, Kazuya Kuramoto1,
Xuefei Tian1, Kazuya Miyagawa1, Mario Boehm1,
Fan Zhang2, David Solow-Cordero3, Joshua
Saldivar3, Eric Austin4, James E. Loyd4, Kay
Huebner5, Purvesh Khatri6, Ross J. Metzger2,
Edda Spiekerkoetter1,2,7
Departments of Medicine (Division of Pulmonary
& Critical Care1), Chemical & Systems Biology3,
and Bioinformatics6, Vera M. Wall Center for
Pulmonary Vascular Disease2, and Cardiovascular
Research Institute7, Stanford University;
Departments of Pediatrics and Medicine4,
Vanderbilt University; Department of Virology5,
Ohio State University
108 Cryo-EM Structure of Histone H3K4 Methyltransferase COMPASS
Qianhui Qu1, Yohhei Takahashi2, Jean-François
Couture3, Ali Shilatifard2, Georgios Skiniotis1
Department of Molecular & Cellular Physiology1,
Stanford University; Department of Biochemistry
& Molecular Genetics2, Northwestern University;
Structural Biology & Epigenetics3, University of
Ottawa
109 Manipulation of Nuclear Architecture through CRISPR Mediated
Chromosomal Looping
Stefanie L. Morgan1,2, Natasha C. Mariano1,2,
Abel Bermudez3,4, Nicole L. Arruda5, Fangting
Wu6, Yunhai Luo1,2, Gautam Shankar1,2, Chiao-
Chain Huang6, Sharon J. Pitteri3,4, Kevin C.
Wang1,2,7
Departments of Dermatology (Program in
Epithelial Biology1) and Radiology4, Program in
Cancer Biology2, and Canary Center for Cancer
Early Detection3, Stanford University;
Department of Biology5, Bridgewater State
University, MA; System Biosciences6, Palo Alto;
VA Palo Alto Healthcare System7
110 Contrastive Principal Component Analysis
Abubakar Abid1, Vivek Bagaria1, Martin Zhang1,
James Zou2
Departments of Electrical Engineering1 and
Biomedical Data Science2, Stanford University
111 Mechanosensory Inputs in Adaptive Intestinal Growth
Anna A. Kim1,2, Shruthi Balachandra2, Lucy E.
O’Brien2*, Beth L. Pruitt1,2,3*
(*corresponding authors) Departments of
Mechanical Engineering1, Molecular & Cellular
Physiology2, and Bioengineering3, Stanford
University
112 Fine Mapping Genome-Wide Association in Narcolepsy Defines Novel
Disease Mechanisms
Hanna M. Ollila1, Ryan Hillary1, Ling Lin1,
Joachim Hallmayer2, Fang Han3, Jimmie Ye4,
Emmanuel Mignot1*
(*corresponding author) Stanford University
Center for Sleep Sciences1 and Department of
Psychiatry & Behavioral Sciences2, Stanford
University; Department of Surgery3, Peking
University People’s Hospital, Beijing, China;
Department of Epidemiology & Biostatistics4,
Institute of Human Genetics, University of
California, San Francisco
113 Cell Type-Specific Chromatin Signatures Underline Regulatory DNA
Elements in Human Induced Pluripotent Stem Cells and Cardiac Cells
Ming-Tao Zhao1,2,3*, Ning-Yi Shao1,2,3*, Shijun
Hu1,2,3*, Ning Ma1,2,3, Rajini Srinivasan4,
Fereshteh Jahanbani5, Jaecheol Lee1,2,3, Michael
P. Snyder5†, Joseph C. Wu1,2,3†
(*co-first authors; †corresponding authors)
Stanford Cardiovascular Institute1, Departments
of Medicine (Division of Cardiology2), Chemical
& Systems Biology4, and Genetics5, and Institute
for Stem Cell Biology & Regenerative Medicine3,
Stanford University
114 Induced Pluripotent Stem Cell Derived Cardiomyocytes on Engineered
Platforms Allows for Assessment of Cardiomyocyte Function
Alison Schroer1,2,3, Gaspard Pardon1, Robin
Wilson1, Aleksandra Denisin1, Erica Castillo1,
Kristina Kooiker2,3,4, Arjun Adhikari2,3, Yen Sin
Ang6, James Spudich2,3, Daniel Bernstein2,4,
Bruce Conklin6, Deepak Srivastava6, Sean Wu2,5,
Alexandre Ribeiro1,2,6, Beth Pruitt1,2
Departments of Mechanical Engineering1,
Biochemisty3, Pediatric Cardiology4, and
Cardiovascular Medicine5 and Cardiovascular
Institute2, Stanford University; Gladstone Institute
of Cardiovascular Disease6, San Francisco
115 Novel CMKLR1 Inhibitors and Structure Activity Relationship Studies
for Application in Demyelinating Disease
Vineet Kumar1, Melissa LaJevic2, Sanjay
Malhotra1, Brian A. Zabel2
Department of Radiation Oncology1, Stanford
University; Palo Alto Veterans Institute for
Research2
116 Small Molecules Facilitating DNA Repair in Breast Cancer Cells
Kedar Hastak1, Vineet Kumar2, Mallesh
Pandrala2, Makelle Gardiner1, Sanjay V.
Malhotra2,3, James M. Ford1
Departments of Medicine (Division of Oncology1)
and Radiation Oncology2 and Molecular Imaging
Program at Stanford (MIPS)3, Stanford University
117 Dual Functions of Flagellum in Motility and Cell Shape Modulation in
Trypanosoma brucei
Stella Y. Sun1,2, Jason T. Kaelber4, Muyuan
Chen4, Xiaoduo Dong3, Jian Shi3, Matthew
Dougherty4, Yasaman Nematbakhsh5, Lim Chwee
Teck5, Steven J. Ludtke4, Michael F. Schmid1,2,
Cynthia Y. He3, Wah Chiu1,2
SLAC National Accelerator Laboratory1 and
Department of Bioengineering2, Stanford
University; Department of Biological Sciences3,
National University of Singapore; National Center
for Macromolecular Imaging4, Baylor College of
Medicine; Department of Mechanical
Engineering5, National University of Singapore
118 The 3.5 Å Cryo-EM Structure of Nanodisc Reconstituted Yeast Vacuolar
ATPase Vo Proton Channel
Soung-Hun Roh1, Nicholas J. Stam2, Corey F.
Hryc3, Sergio Couoh-Cardel2, Grigore Pintilie3,
Stephan Wilkens2, Wah Chiu1
Department of Bioengineering1, Stanford
University; Department of Biochemistry &
Molecular Biology2, SUNY Upstate Medical
University; National Center for Macromolecular
Imaging3, Baylor College of Medicine
119 7 Angstrom Cryo-EM Structure of Tbox Riboswitch and tRNA Complex
Zhaoming Su1, Shuang Li2, Jinwei Zhang2, Wah
Chiu1
Department of Bioengineering1, Stanford
University; Laboratory of Molecular Biology2,
NIDDK, NIH
120 Cryo-EM of 30 kDa HIV-1 RNA Dimer Initiation Site
Kaiming Zhang1, Sarah C. Keane2,3, Zhaoming
Su1, Rossitza N. Irobalieva6,7, Jan Marchant2,3,
Xiao Heng4, Michael F. Schmid1, David A. Case5,
Steven J. Ludtke6,7, Michael F. Summers2,3, Wah
Chiu1*
(*corresponding author) Department of
Bioengineering1, Stanford University; Howard
Hughes Medical Institute (HHMI)2 and
Department of Chemistry & Biochemistry3,
University of Maryland, Baltimore County
(UMBC); Department of Biochemistry4,
University of Missouri—Columbia; Department
of Chemistry & Chemical Biology5, Rutgers
University; National Center for Macromolecular
Imaging6 and Verna & Marrs McLean
Department of Biochemistry & Molecular
Biology7, Baylor College of Medicine
121 The CEP19-RABL2 GTPase Complex Binds IFT-B to Initiate
Intraflagellar Transport at the Ciliary Base
Tomoharu Kanie1,2, Peter K. Jackson1,2
Baxter Laboratory1 and Department of
Microbiology & Immunology2, Stanford
University
122 Rapid Bacterial Identification Based on Surface-Enhanced Raman
Scattering and Machine Learning
Chi-Sing Ho1, Neal Jean2, Amr Saleh3, Stefano
Ermon4, Niaz Banaei5, Jennifer Dionne3
Departments of Applied Physics1, Electrical
Engineering2, Materials Science & Engineering3,
Computer Science4, and Pathology5, Stanford
University
123 Evidence That the Human Innate Immune Peptide LL-37 May Be a
Binding Partner of Aβ and Inhibitor of Fibril Assembly
Ersilia De Lorenzi1, Marcella Chiari2*, Raffaella
Colombo1, Marina Cretich2, Laura Sola2, Renzo
Vanna3, Paola Gagni2, Federica Bisceglia1, Carlo
Morasso3, Jennifer S. Lin5, Moonhee Lee4, Patrick
L. McGeer4, Annelise E. Barron5*
(*corresponding authors) Department of Drug
Sciences1, University of Pavia, Italy; Institute of
Chemistry of Molecular Recognition2, National
Research Council of Italy; Laboratory of
Nanomedicine and Clinical Biophotonics
(LABION)3, Fondazione Don Carlo Gnocchi
ONLUS, Italy; Kinsmen Laboratory of
Neurological Research4, University of British
Columbia, Canada; Department of
Bioengineering5, Stanford University
124 Significant ERK1/2 Phosphorylation but No Change in Dual Specificity
Phosphatase 14 After Acute Ischemic Optic Neuropathy
Varun Kumar1, Yaping Joyce Liao1, Jeffrey L.
Goldberg1
Department of Ophthalmology1, Stanford
University
125 Bayesian Online Haplotype Inference Method for Portable DNA
Sequencers Yosuke Tanigawa1, Manuel Rivas1,2
Biomedical Informatics Training Program1 and
Department of Biomedical Data Science2,
Stanford University
126 Single-Cell Map of Microbe-Immune Transcriptome
Ryan Kellogg1,2, Feiqiao Yu1, Stephen Quake1,
Mike Snyder2
Departments of Bioengineering1 and Genetics2,
Stanford University
127 Designing Novel Nani-Ores for Detection of Small Molecules
Jamin Koo1, Andres Parberg1, Jessyln Janssen2,
Possu Huang1
Department of Bioengineering1, Stanford
University; Department of Biology2, University of
Manitoba
128 Inhibition of NGLY1 Inactivates the Transcription Factor Nrf1 and
Potentiates Proteasome Inhibitor Cytotoxicity
Fred Tomlin1, Ulla Gerling-Driessen1, Carolyn
Bertozzi1
Department of Chemistry1, Stanford University
129 Quantification of Transplant-Derived Circulating Cell-Free DNA in
Absence of a Donor Genotype
Eilon Sharon1,2*, Hao Shi8, Sandhya Kharbanda3,
Winston Koh4,5,6, Lance R. Martin4,5,6, Kiran K.
Khush7, Hannah Valantine8, Jonathan K.
Pritchard1,2,4*, Iwijn De Vlaminck9*
(*corresponding authors) Departments of
Genetics1, Biology2, Bioengineering5, Applied
Physics6, and Medicine (Division of
Cardiovascular Medicine7) and Howard Hughes
Medical Institute4, Stanford University; Pediatric
Stem Cell Transplantation3, Lucile Packard
Children’s Hospital; National Institutes of
Health8, Bethesda, Maryland; Meinig School of
Biomedical Engineering9, Cornell University
130 Social Control of Hypothalamus-Mediated Male Aggression
Taehong Yang1, Cindy F. Yang5, M. Delara
Chizari6, Niru Maheswaranathan2, Kenneth J.
Burke, Jr.5, Maxim Borius6, Sayaka Inoue1,
Michael C. Chiang6, Kevin J. Bender7, Surya
Ganguli3,4, Nirao M. Shah1,4
Departments of Psychiatry & Behavioral
Sciences1, Applied Physics3, and Neurobiology4
and Neurosciences Program2, Stanford
University; Program in Neuroscience5 and
Departments of Anatomy6 and Neurology7,
University of California, San Francisco
131 Harnessing Controlled Release Polymer-Nanoparticle Hydrogel to
Produce Robust Long-Term Immunity
Gillie Agmon1, Anthony C. Yu2, Caitlin L.
Maikawa1, Emily C. Gale3, Eric A. Appel2
Departments of Bioengineering1, Materials
Science & Engineering2, and Biochemistry3,
Stanford University
132 Role of Transcription Factor Er81/ETV1 in the Enteric Nervous System
Josphine L. Belluardo1*, Subhamoy Das2*,
Richard J. DiCasoli1, Michael D. Gershon3, Julia
A. Kaltschmidt2
(*co-first authors) Developmental Biology
Program1, Sloan Kettering Institute, Memorial
Sloan Kettering Cancer Center; Department of
Neurosurgery2, Stanford University; Department
of Pathology & Cell Biology3, Columbia
University
133 Supramolecular CB[7] Designer Excipient for Improved Insulin
Formulations
Caitlin L. Maikawa1, Gillie Agmon1, Emily C.
Gale2, Bruce A. Buckingham3, David M. Maahs3,
Eric A. Appel4
Departments of Bioengineering1, Biochemistry2,
Pediatrics3, and Materials Science &
Engineering4, Stanford University
134
A Novel Bed-Mounted Projection System is Superior to Pharmacological
Agent Midazolam and Does Not Increase Pre-Induction Time When
Managing Pediatric Preoperative Anxiety: A Retrospective Study
Jeremy H. Tsui1, Thomas J. Caruso1, Samuel
Rodriguez1
Department of Anesthesiology, Perioperative, &
Pain Medicine1, Stanford University
135 Immersive Virtual Reality (VR) Improves Compliance During a Minor
Procedure
Jeremy H. Tsui1, Justin C. Yuan1, Michael
Khoury1, Vincent Sferra1, Meagan Wu1, Kevin
Chen1, Gavin Traber1, Vaibhav Murali1, Jessica
Maya Hernandez1, Alexandria Joseph1, Samuel
Rodriguez1, Thomas J. Caruso1
Department of Anesthesiology, Perioperative, &
Pain Medicine1, Stanford University
136
Provider Controlled Virtual Reality Experience Adjusts Cognitive Load
to Reduce Fear and Perceptual Pain During Intravenous Access in
Pediatric Patients
Samuel Rodriguez1, Justin C. Yuan1, Jeremy H.
Tsui1, Gavin Traber1, Vincent Sferra1, Meagan
Wu1, Jessica Maya Hernandez1, Thomas J.
Caruso1
Department of Anesthesiology, Perioperative, &
Pain Medicine1, Stanford University
137 Building Systems to Support and Sustain Virtual Reality in the Inpatient
Setting
Alexandria Joseph1, Jeremy H. Tsui1, Kevin
Chen1, Gavin Traber1, Meagan Wu1, Samuel
Rodriguez1, Thomas J. Caruso1
Department of Anesthesiology, Perioperative, &
Pain Medicine1, Stanford University
138 Ethical Implications for Virtual Reality Induced False Memory
Formation in Pediatric Patients
Justin C. Yuan1,2, Jeremy H. Tsui2, Kevin Chen2,
Thomas J. Caruso2, Samuel Rodriguez2, Alyssa
M. Burgart2
William Beaumont School of Medicine1, Oakland
University; Department of Anesthesiology,
Perioperative, & Pain Medicine2, Stanford
University
139 Technical Solutions for Implementation of Virtual Reality Headsets in
the Hospital Setting
Ben Chuter1, Justin C. Yuan1,2, Andrew
Terajewicz1, Michael Khoury1, Vincent Sferra1,
Samuel Rodriguez1
Department of Anesthesiology, Perioperative, &
Pain Medicine1, Stanford University; William
Beaumont School of Medicine2, Oakland
University
140 Reading and Ocular Motor Abnormalities in Cerebellar Ataxia
Angela Oh1, Joyce Liao1
Department of Ophthalmology1, Stanford
University
141
The Landscape of Genomic and Clonal Characterization of Immunogenic
Neoepitopes Across >10,000 Samples from 32 Cancers in the Cancer
Genome Atlas (TCGA)
HoJoon Lee1, Susan M. Grimes2, Stephanie
Greer2, Anurag Sethi3, Jae-Ho Cheong4, Hanlee P.
Ji1,2
Department of Medicine (Division of Oncology1)
and Stanford Genome Technology Center2,
Stanford University; Seven Bridges Genomics,
Inc.3, Cambridge, MA; Department of Surgery4,
Yonsei University, Seoul, Korea
142 Predicting the Molecular Crosstalk Between Transplanted Cells and the
Ischemic Brain Using Transcriptome Analysis
Ricardo L. Azevedo-Pereira1,2, Nathan C.
Manley1,2, Jennifer Vu1,2, Mårten C. Winge3, Jack
Berry1,2, Guohua Sun1,2, Tonya Bliss1,2, Gary K.
Steinberg1,2
Departments of Neurosurgery1 and Dermatology3
and Stanford Stroke Center2, Stanford University
143 Trop2 as a Driver of Aggressive Prostate Cancer
En-Chi Hsu1,2, Meghan A. Rice1,2, Rosalie
Nolley3, Jiaoti Huang4, Abel Bermudez1,2, Sharon
Pitteri1,2, Donna M. Peehl3, James D. Brooks3,
Tanya Stoyanova1,2
Departments of Radiology1 and Urology3 and
Canary Center for Cancer Early Detection2,
Stanford University; Department of Pathology4,
Duke University
144 Utilizing Magnetic Levitation as Inexpensive, Platelet Based Early
Cancer Diagnostic Modality
Loza Tadesse1,3, Utkan Demirci2,3
Departments of Bioengineering1 and Radiology2
and Canary Center for Cancer Early Detection3,
Stanford University
145 Unique Serum Metabolomic Profiles in Preeclampsia: Implications for
Pathophysiology
Zhen Li1, Xin Liu1, Shiying Hao2,3, Jin You1,
Jaehong Kim1, Karl Sylvester1, Doff
McElhinney2,3, Harvey Cohen4, Bruce Ling1,3
Departments of Surgery1, Cardiothoracic
Surgery2, and Pediatrics4, Stanford University;
Clinical & Translational Research Program3,
Betty Irene Moore Children’s Heart Center,
Lucile Packard Children’s Hospital
146 Molecular Regulation of Neutrophil Cell Surface Sialyation and the
Siglec-9 Mediated Neutrophil Death
Yue Wang1, Zhen Li1, Guang Hu1, Shiying Hao2,5,
Xiaohong Deng1, Min Huang6, Miao Ren1,
Xiyuan Jiang1, John T. Kanegaye7,8, Kee-Soo Ha9,
JungHwa Lee9, Xiaofeng Li10, Xuejun Jiang11,
Yunxian Yu4, Adriana H. Tremoulet7,8, Jane C.
Burns7,8, John C. Whitin3, Andrew Y. Shin3, Karl
G. Sylvester1, Doff B. McElhinney3,5, Harvey J.
Cohen3, Xuefeng B. Ling1,4,5, the Pediatric
Emergency Medicine Kawasaki Disease Research
Group8
Departments of Surgery1, Cardiothoracic
Surgery2, and Pediatrics3, Stanford University;
School of Public Health4, School of Medicine,
Zhejiang University, China; Clinical &
Translational Research Program5, Betty Irene
Moore Children’s Heart Center, Lucile Packard
Children’s Hospital; The Speciality of
Cardiovascular Disease6, Shanghai Children’s
Hospital, China; Department of Pediatrics7,
University of California, San Diego; Rady
Children’s Hospital8, San Diego; Department of
Pediatrics9, Guro Hospital, Korea University
Medical Center; Department of Heart Center10,
Beijing Children’s Hospital, China; Cell Biology
Program11, Memorial Sloan-Kettering Cancer
Center
147
Comparison of 18F-FDG PET/MR, Whole Body DW MR and Clinical
Standard Imaging Tests for Treatment Monitoring of Solid Cancers in
Children and Young Adults
Ramitha Nyalakonda1,2, Ashok J. Theruvath1,2,
Anne M. Muehe1,2, Sandra Luna-Fineman3, Arun
A. Rangaswami2, Sheri L. Spunt3, Heike E.
Daldrup-Link1,2
Department of Radiology1 and Molecular Imaging
Program at Stanford (MIPS)2, Stanford
University; Department of Pediatrics (Pediatric
Oncology3), Lucile Packard Children’s Hospital
148 Hypoxia Driven Epigenetic Modifications Regulated Retinoic Acid-
Induced Differentiation in Human Neuroblastoma Cells
Yang Li1, Yiren Zhou1, John M. Maris2, Amato J.
Giaccia1, Jiangbin Ye1
Department of Radiation Oncology1, Stanford
University; Department of Pediatric Hematology
& Oncology2, Children’s Hospital of Philadelphia
149 Targeting Serine and One-Carbon Metabolism in Metastatic Breast
Cancer
Albert M. Li1,2, Gregory S. Ducker6,7, Yang Li1,
Jose A. Seoane3, Yiren Zhou1, Ling Liu6,7, Sakari
Vanharanta5, Erinn B. Rankin1,2, Joan Massagué5,
Christina Curtis2,3,4, Joshua D. Rabinowitz6,7,
Craig B. Thompson5, Jiangbin Ye1,2
Departments of Radiation Oncology1 and
Medicine3, Cancer Biology Program2, and
Stanford Cancer Institute4, Stanford University;
Cancer Biology & Genetics Program5, Memorial
Sloan Kettering Cancer Center; Lewis-Sigler
Institute for Integrative Genomics6 and
Department of Chemistry7, Princeton University
150 Toward Decoding Temporal Anticipation from Single Trial EEG Data
Emily Graber1,2, Takako Fujioka1,2,3
Center for Computer Research in Music &
Acoustics1, Department of Music2, and Stanford
Neurosciences Institute3, Stanford University
151 A Systematic Study of Swelling-Induced Instabilities of Hydrogels
Berkin Dortdivanlioglu1, Christian Linder1
Department of Civil & Environmental
Engineering1, Stanford University
152 Radiolabeling Exosomes using PET Reporter Genes and Probes
Elise Robinson1,2, Gayatri Gowrishankar2, Travis
Shaffer2, Cayo Gonzalez2,3, Vigneshwaran
Mani2,4, Utkan Demirci2,4, Sanjiv Sam
Gambhir1,2,4
Departments of Bioengineering1 and Radiology2
and Canary Center for Cancer Early Detection4,
Stanford University; Department of Biochemistry
& Molecular Biophysics3, Columbia University
153 Electroactive Polymer-Based Haptic Feedback in Teleoperated Needle
Membrane Puncture
Katerina C. Gregoriou1, Amy Kyungwon Han1,
Jung Hwa Bae1, Bruce L. Daniel2, Mark
Cutkosky1
Departments of Mechanical Engineering1 and
Radiology2, Stanford University
154 Department of Comparative Medicine’s Pathology and Diagnostic
Services
Kerriann Casey1, Roberta Moorhead1, Jose
Vilches-Moure1
Department of Comparative Medicine1, Stanford
University
155 Instrumentation for Combining Electrical Brain Stimulation with EEG
Recording
Vladimir Vildavski1, Angelo Dragone2, Jeff
Olsen2, Chris Kenney2, Ryan Herbst2, Stephen
Boyd3, Nolan Williams4, Marty Breidenbach2,
Anthony Norcia1
Departments of Psychology1, Electrical
Engineering3, and Psychiatry & Behavioral
Sciences4 and SLAC National Accelerator
Laboratory2, Stanford University
156 Adhesion Prevention Using Polymer Nanoparticle (PNP) Hydrogels
Lyndsay Stapleton1, Amanda Steele1, Akshara
Thakore2, Anthony Yu3, Joseph Woo2, Eric
Appel3
Departments of Bioengineering1, Cardiothoracic
Surgery2, and Materials Science & Engineering3,
Stanford University
157 Measuring Microscopic Diffusion Anisotropy in Multiple Sclerosis
Patients with Double Diffusion Encoding MRI
Grant Yang1,2, Qiyuan Tian1,2, Christoph Leuze2,
Max Wintermark2, Jennifer McNab2 Departments of Electrical Engineering1 and
Radiology2, Stanford University
158 Predicting Prostate Cancer Recurrence Using Structured Pre-Operative
EMR Data
Martin Seneviratne1, James Brooks2, Michelle
Ferrari2, Nigam Shah1, Tina Hernandez-Boussard1
Departments of Medicine (Biomedical
Informatics Research1) and Urology2, Stanford
University
159 Miniaturized Optical BioSensor for Point-of-Care Total Protein
Measurement
Fariah Mahzabeen1, Ophir Vermesh2, Sanjiv S.
Gambhir2,3, James S. Harris1
Departments of Electrical Engineering1 and
Radiology2 and Canary Center for Cancer Early
Detection3, Stanford University
160 Correlation of Stented Renal Geometry and Respiratory-Induced
Deformation with Respect to Stented Length in Complex EVAR Patients
John Kim1,2, Ga-Young Suh1, Jason T. Lee1,
Christopher P. Cheng1
Department of Vascular Surgery1, Stanford
University; Department of Biology2, University of
Chicago
161 Modeling Brownian Spheroidal Nanoparticles in Near-Wall Vascular
Flows
Tiras Y. Lin1, Preyas N. Shah1, Bryan R. Smith2,
Eric S.G. Shaqfeh1,3
Departments of Mechanical Engineering1,
Radiology2, and Chemical Engineering3, Stanford
University
162 Injectable Self-Organizing Microtissues for Rapid Host Vascularization
of Ischemic Tissues
Ninna S. Rossen1,2, Rafael zur Nieden2, Kahmun
Lo2, Danielle R. Bajakian3, Brian M. Gillette2,
Samuel K. Sia2
Department of Radiation Oncology1, Stanford
University; Department of Biomedical
Engineering2 and NewYork–Presbyterian
Hospital3, Columbia University
163 Upconverting Nanoparticles as Optical Sensors of Nano- to Micro-
Newton Forces
Alice Lay1, Derek Wang2, Michael Wisser2,
Randy Mehlenbacher2, Yu Lin3, Wendy Mao4,
Miriam Goodman5, Jennifer Dionne2
Departments of Applied Physics1, Materials
Science & Engineering2, Geological Sciences4,
and Molecular & Cellular Physiology5 and SLAC
Institute for Materials & Energy Sciences3,
Stanford University
164 Stem Cell Transplantation as Treatment for Acute Ischemic Optic
Neuropathy
Louise A. Mesentier-Louro1, Mohammad Ali
Shariati1, Kyle Marra2, Varun Kumar1, Martin
Friedlander2, Yaping Joyce Liao1
Department of Ophthalmology1, Stanford
University; Department of Cell & Molecular
Biology2, The Scripps Research Institute
165 Simultaneous Brain and Spinal Cord fMRI Using Slice-Based Dynamic
Shimming
Christine Law1, Haisam Islam2, Sean Mackey1,
Gary Glover3
Departments of Anesthesia1, Bioengineering2, and
Radiology3, Stanford University
166 Discovering Bacterial Lipids and Lipid Synthesis Enzymes to Clarify
Interpretation of the Molecular Fossil Record
Amy B. Banta1, Jeremy H. Wei1, Alysha Lee1,
Jose L. Giner2, Paula V. Welander1
Department of Earth System Science1, Stanford
University; Department of Chemistry2, State
University of New York (SUNY) College of
Environmental Science & Forestry
167 Deep Convolutional Neural Networks for Accelerated Dynamic Magnetic
Resonance Imaging
Christopher M. Sandino1, Neerav Dixit1, Joseph
Y. Cheng2, Shreyas S. Vasanawala2
Departments of Electrical Engineering1 and
Radiology2, Stanford University
168 A New SMS Sequence for fMRI: POMP
Patricia Lan1, Gary Glover2
Departments of Bioengineering1 and Radiology2,
Stanford University
169 Functional and Histological Analysis of a Mouse Model of Oculocerebral
Renal Syndrome of Lowe
Jorge A. Alvarado1, Na Luo2, Emilie Song2,
Judith Quigley2, Yang Sun1
Department of Ophthalmology1, Stanford
University; Eugene & Marilyn Glick Eye
Institute2, Indiana University School of Medicine
170
Long Term Effect of High Frequency Deep Brain Stimulation on
Subthalamic Beta Band Oscillations and Motor Function in Parkinson’s
Disease
Amaris Martinez1, Anca Velisar1, Ross
Anderson1, Furqan Afzal1, Megan Trager1, Helen
Bronte-Stewart1,2
Departments of Neurology & Neurological
Sciences1 and Neurosurgery2, Stanford University
171 Intravascular Shear Wave Elastography
Arsenii Telichko1, Carl Herickhoff1, Dongwoon
Hyun1, Jeremy Dahl1
Department of Radiology1, Stanford University
172
Moving from Inter-Regional to Inter-Personal Network Science to
Examine Neural Correlates of Effective Team Collaboration: A
Simultaneous 3-Person fMRI Study
Manish Saggar1, Amber Howell1, Malte Jung2,
Gary Glover3, Allan Reiss1,3
Departments of Psychiatry & Behavioral
Sciences1 and Radiology3, Stanford University;
Department of Information Science2, Cornell
University
173 Using Algebraic Topology to Examine Brain’s Dynamical Organization
During Ongoing Cognition
Manish Saggar1, Olaf Sporns2, Gunnar Carlsson3,
Gary Glover4, Allan Reiss1,4
Departments of Psychiatry & Behavioral
Sciences1, Mathematics3, and Radiology4,
Stanford University; Department of Cognitive
Science2, Indiana University
174 Cationic Amphiphilic Compounds Restrict Intracellular Mycobacterium
tuberculosis
Douglas Fox1, Michael Schump2, Lee Riley2
Carolyn Bertozzi1,3
Department of Chemistry1 and Howard Hughes
Medical Institute3, Stanford University; Graduate
Group in Infectious Diseases & Immunity2,
School of Public Health, University of California,
Berkeley
175 Building a Generic, Configurable, and User-Friendly Real-Time
Computation Engine
Sabar Dasgupta1,2, Pavan Mehrotra1,2, Samantha
Robertson2,3, Paul Nuyujukian1,2,4,5,6,7
Departments of Electrical Engineering1,
Bioengineering2, and Neurosurgery4,
Mathematical & Computational Science
Program3, Neurosciences Program5, Stanford
Neurosciences Institute6, and Stanford Bio-X7,
Stanford University
176 Deploying Realtime Linux with Python for Applications in Systems
Neuroscience
Samantha Robertson1,2, Sabar Dasgupta3,2, Paul
Nuyujukian2,3,4,5,6,7
Mathematical & Computational Science
Program1, Departments of Bioengineering2,
Electrical Engineering3, and Neurosurgery4,
Neurosciences Program5, Stanford Neurosciences
Institute6, and Stanford Bio-X7, Stanford
University
177 The Mechanism of Rb Ohosphorylation by Cyclin D-Cdk4/6
Benjamin R. Topacio1,2, Mardo Kõivomägi1,
Evgeny Zatulovskiy1, Jan M. Skotheim1
Department of Biology1 and Cancer Biology
Program2, Stanford University
178 Pressure Calibration for Transcranial Ultrasound Using Simulation
Methods and MR-ARFI
Pooja Gaur1, Ningrui Li2, Kim Butts Pauly1
Departments of Radiology1 and Electrical
Engineering2, Stanford University
179 Arsenic and the Microbiome: Towards Microbiome-Centric Public
Health Interventions
Stephanie Bachas-Daunert1, Sooyeol Kim1, Juan
Lezama Pacheco2, Craig S. Criddle1, David A.
Relman3,4
Departments of Civil & Environmental
Engineering1, Earth System Science2, Medicine3,
and Microbiology & Immunology4, Stanford
University
180 Loss of Cilia in Ocular Melanoma: Implications for Diagnosis
Emilie Song1, Elaine Chan1, Yang Sun1
Department of Ophthalmology1, Stanford
University
181 Direct Selection of Fluorescence-Enhancing RNA Aptamers
Michael Gotrik1,2,3, Gurpreet Sekhon2,3, Tom
Soh2,3
Materials Department1, University of California,
Santa Barbara; Departments of Radiology2 and
Electrical Engineering3, Stanford University
182 Heightened Threat Perception in Adolescents with Chronic Pain
Anna Park1, Molly Fischer1, Vaibhav Murali1,
Corey Kronman2,3, Farah Mahmud2,3, Maya
Hernandez1, Laura Simons1
Department of Anesthesiology, Perioperative, &
Pain Medicine1, Stanford University; Department
of Anesthesiology, Perioperative, & Pain
Medicine2, Boston Children’s Hospital; P.A.I.N.
(Pain & Anelgesia Imagining Neuroscience)
Group3, Boston Children’s Hospital and Center
for Pain in the Brain, Harvard Medical School
183 Alterations in Memories for Fearful Experiences Among Youth with
Chronic Pain
Molly Fischer1, Anna Park1, Maya Hernandez1,
Corey Kronman2,3, Farah Mahmud2,3, Laura
Simons1
Department of Anesthesiology, Perioperative, &
Pain Medicine1, Stanford University; Department
of Anesthesiology, Perioperative, & Pain
Medicine2, Boston Children’s Hospital; P.A.I.N.
(Pain & Anelgesia Imagining Neuroscience)
Group3, Boston Children’s Hospital and Center
for Pain in the Brain, Harvard Medical School
184 Probing the 3D Structure of Chromatin
Mirae Parker2, Leslie Mateo1, Nasa Sinnott-
Armstrong3, Alistair Boettiger1
Departments of Developmental Biology1,
Physics2, and Genetics3, Stanford University
185 Mapping Cardiac Arrhythmic Activities in Rabbit with High
Spatiotemporal Resolution Using a Novel Elastic Polymeric Device
Xinyuan Zhang1, Joy Aparicio Valenzuela1, Jia
Liu2, Yuxin Liu2, Meghedi Babakhanian3,
Mahmood Al Husseini4, Sanjiv Narayan4, Paul
Wang3, Zhenan Bao2, Anson Lee1
Departments of Cardiothoracic Surgery1,
Chemical Engineering2, Medicine3, and
Cardiovascular Medicine4, Stanford University
186 Single Cell Studies of Competence and Progression in Primary
Mammalian Cells
Carolyn Kravitz1, Clayton Schwarz1, Jan
Skotheim1
Department of Biology1, Stanford University
187 A Genetically Engineered Mouse Model of Fibrolamellarhepatocellular
Carcinoma
Vicky Le1,2, Garry Coles1,2, Lei Xu1,2, Thuyen
Nguyen1,2, Julien Sage1,2
Departments of Pediatrics1 and Genetics2,
Stanford University
188 The Role of OCRL in Cell Cycle Progression: Implications for
Oculocerebrorenal Syndrome of Lowe
Biao Wang1, Cathleen Wallmuth2, Na Luo2,
Xinyao Hu2, Clark Wells3, Yang Sun1
Department of Ophthalmology1, Stanford
University; Departments of Ophthalmology2 and
Biochemistry & Molecular Biology3, Indiana
University
189 Personalized Molecular Detection of Cancer Mutations
Christina Wood-Bouwens1, Billy Lau2, Bob St.
Onge2, HoJoon Lee2, Hanlee P. Ji1,2
Department of Medicine (Division of Oncology1)
and Stanford Genome Technology Center2,
Stanford University
190 Harmony and Rhythm Anticipation is Determined by the Architecture of
a Recurrent Neural Network
Irán Román1,2, Takako Fujioka1,2
Department of Music1 and Stanford
Neurosciences Institute2, Stanford University
191 Electric Field Sensitive Upconverting Nanoparticles for in vivo Action
Potential Imaging
Randy D. Mehlenbacher1, Chris Siefe1, Rea
Kolbl2, Alice Lay2, Jennifer A. Dionne1
Departments of Materials Science & Engineering1
and Applied Physics2, Stanford University
192 Combined Approach Using Bioengineering and Partial Reprogramming
of Aged Stem Cells to Treat Volumetric Muscle Loss
Marco Quarta1,2,3, Patrick Paine1,2,3, Alex
Colville1,2,3, Linda Doan1,2,3, Tapash Sarkar5,
Vittorio Sebastiano4,5, Thomas Rando1,2,3
Departments of Neurology & Neurological
Sciences1 and Obstetrics & Gynecology4, Paul F.
Glenn Laboratories for the Biology of Aging2, and
Institute for Stem Cell Biology & Regenerative
Medicine5, Stanford University; Center for Tissue
Regeneration, Restoration & Repair3, Veterans
Affairs Hospital Palo Alto
193 Widespread Differential Expression of Coding Region and 3’UTR
Sequences in Neurons and Other Tissues
Ze Yang1, Thomas Kenney1, Shaoyi Ji1, Arif
Kocabas1, Sarayna Kumar1, Mary Hynes1
Department of Biology1, Stanford University