software & services for georeferencing of natural history collections data

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Software & services for georeferencing of natural history collections data automated georeferencing verification & correcti batch processing geographic visualization uncertainty determination collaborative georeferencing interoperability multi-lingual kml export google, bing, openstreet, wms soap & rest api training

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Software & services for georeferencing of natural history collections data. automated georeferencing. verification & correction. multi-lingual. kml export. interoperability. soap & rest api. batch processing. training. geographic visualization. uncertainty determination. - PowerPoint PPT Presentation

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Page 1: Software & services for georeferencing of natural history collections data

Software & services for georeferencing of natural history collections data

automated georeferencing

verification & correction

batch processing

geographic visualizationuncertainty determination

collaborative georeferencing

interoperability

multi-lingual

kml export

google, bing, openstreet, wms

soap & rest api

training

Page 2: Software & services for georeferencing of natural history collections data

What is Georeferencingpushepatapa creek, trib. to pearl river, 7.8 miles north of bogalusa at hwy 21; Washington; LA; USA

latitude: 30.88797longitude: -89.83601 uncertainty radius: 48muncertainty polygon: 30.88823,-89.83641, 30.88815,-89.83634, 30.88808,-89.83622…

Page 3: Software & services for georeferencing of natural history collections data

Typical GE

OLocate Workflow

pushepatapa creek, trib. to pearl river, 7.8 miles north of bogalusa at hwy 21; Washington; LA; USA

Automated Georeferencing

Visualize, verify & adjust output coordinates & uncertainties

Data Entry &Preparation

AutomatedProcessing

ManualVerification

latitude: 30.88797longitude: -89.83601 uncertainty radius: 48m

uncertainty polygon: 30.88823,-89.83641, 30.88815,-89.83634, 30.88808,-89.83622…

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2

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Page 4: Software & services for georeferencing of natural history collections data

Options: Web vs. Desktop?

Page 5: Software & services for georeferencing of natural history collections data

Georeferencing Example: Desktop App

Page 6: Software & services for georeferencing of natural history collections data

Computed coordinates are displayed on digital maps

Manual verification of each record

Drag and drop correction of records

Locality Visualization & Adjustment

Page 7: Software & services for georeferencing of natural history collections data

Multiple Result Handling

Caused by duplicate names, multiple names & multiple displacements

Results are ranked and most “accurate” result is recorded and used as primary result

All results are recorded and displayed as red arrows

Working on using specimen data to limit spread of results

Beaver Creek; Louisiana; USA

Page 8: Software & services for georeferencing of natural history collections data

Eagle Lake,Warren County,Mississippi, USA

Representation of Uncertainty

Page 9: Software & services for georeferencing of natural history collections data

Uncertainty within GEOLocate

Polygons represented as a comma delimited array of vertices using latitude and longitude

Point radius (web app) and polygonal uncertainties (both)

Supports auto-detection and generation of polygons for selected places (web app only, in development for desktop app)

Point radius represented as a distance in meters fromgeoreferenced point

Utah Lake, UT, USA

Page 10: Software & services for georeferencing of natural history collections data

Georeferencing Options:

Mythical Place

7 miles N

orth of

Mythical Place

7 miles N

orth of

My Creek at Hwy 1

My C

reek

Match Water BodyDetect Hwy/River Crossing

Page 11: Software & services for georeferencing of natural history collections data

Generating Polygons:

15 mi N of Lawrence, KSdisplaced polygon

15 mi N of Lawrence, KSno displacementLawrence, KS

Page 12: Software & services for georeferencing of natural history collections data

7 miles South of Harrisburg; Poinsett; Arkansas;

USA;

+BGIntegrating Results from Biogeomancer

Biogeomancer

GEOLocate

Active Marker

Page 13: Software & services for georeferencing of natural history collections data

Visualization: Base Layers

Page 14: Software & services for georeferencing of natural history collections data

Web Client

Walkthrough

Page 15: Software & services for georeferencing of natural history collections data
Page 16: Software & services for georeferencing of natural history collections data

Homochitto National Forest; MS; USA

Page 17: Software & services for georeferencing of natural history collections data

Homochitto National Forest; MS; USA

Page 18: Software & services for georeferencing of natural history collections data

Homochitto National Forest; MS; USA

Along Highway 84

Page 19: Software & services for georeferencing of natural history collections data
Page 20: Software & services for georeferencing of natural history collections data

Batch Georeferencing

Page 21: Software & services for georeferencing of natural history collections data

Collaborative Georeferencing: Sharing Data

Page 22: Software & services for georeferencing of natural history collections data

Collaborative Georeferencing: Distributed Workloads

Page 23: Software & services for georeferencing of natural history collections data

A Framework for Collaborative GeoreferencingDiGIR Service

Record Processor

CoGe Client Application

(Desktop or Web)

Cache Update Web Service

CoGe Web Portal Application

Data Store

Georeferencing Web Service

Data Retrieval Web Service

Insert Correction Web Service

Remote Data Source

CSV Upload

Page 24: Software & services for georeferencing of natural history collections data

Community Community

CommunityCommunity

Data sources

Data sources

Data sources

Data sources

Users

A Framework for Collaborative Georeferencing

Page 25: Software & services for georeferencing of natural history collections data

Collaborative Georeferencing Management Portal

Page 26: Software & services for georeferencing of natural history collections data

Georeferencing Communities

Data Sources

CreateCommunities

Add New Users & Link Out

Page 27: Software & services for georeferencing of natural history collections data

Georeferencing Communities

Data Sources

Page 28: Software & services for georeferencing of natural history collections data

Assign all records from Kenya toexperts on East African regions

User Management:Task Assignment

Page 29: Software & services for georeferencing of natural history collections data

Monitoring & Managing Progress

Page 30: Software & services for georeferencing of natural history collections data

Data Repatriation

Page 31: Software & services for georeferencing of natural history collections data

Collaborative Web Client

Optional Hyperlink

Page 32: Software & services for georeferencing of natural history collections data

Interoperable Services

• Georeferencing Web Services– Version 1– Version 2

• Validation– Taxon Footprint

• Application– Embeddable Web Client

Page 33: Software & services for georeferencing of natural history collections data

SOAP & HTTP Get/PostGeoreferencing Services:

GEOLocate v2

http://www.museum.tulane.edu/webservices/geolocatesvcv2/geolocatesvc.asmx

Page 34: Software & services for georeferencing of natural history collections data

HTTP/1.1 200 OKContent-Type: text/xml; charset=utf-8Content-Length: length

<?xml version="1.0" encoding="utf-8"?><Georef_Result_Set xmlns="http://www.museum.tulane.edu/webservices/"> <EngineVersion>string</EngineVersion> <NumResults>int</NumResults> <ExecutionTimems>double</ExecutionTimems> <ResultSet> <WGS84Coordinate> <Latitude>double</Latitude> <Longitude>double</Longitude> </WGS84Coordinate> <ParsePattern>string</ParsePattern> <Precision>string</Precision> <Score>int</Score> <UncertaintyRadiusMeters>string</UncertaintyRadiusMeters> <UncertaintyPolygon>string</UncertaintyPolygon> <ReferenceLocation>string</ReferenceLocation> <DisplacedDistanceMiles>double</DisplacedDistanceMiles> <DisplacedHeadingDegrees>double</DisplacedHeadingDegrees> <Debug>string</Debug> </ResultSet> <ResultSet> . . . </ResultSet></Georef_Result_Set>

georef2()Version 2 Get Response

Page 35: Software & services for georeferencing of natural history collections data
Page 36: Software & services for georeferencing of natural history collections data
Page 37: Software & services for georeferencing of natural history collections data

Application Services: Web Client APIs

• URL API for user input & lightweight web clients

• Lightweight client, specifically designed for embedding into other web applications.

• Two way communication in light client requires JavaScript postMessage()

• Compatible with all modern browsers:

IE 8.0+Firefox 3.0+Safari 4.0+Chrome 1.0+Opera 9.5+

Page 38: Software & services for georeferencing of natural history collections data
Page 39: Software & services for georeferencing of natural history collections data

Arctos

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Page 41: Software & services for georeferencing of natural history collections data
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Page 43: Software & services for georeferencing of natural history collections data

Excel

http://www.museum.tulane.edu/geolocate/web/WebGeoref.aspx?v=1&Country=USA&State=LA&County=Washington&Locality=Bogalusa&georef=run