s.larson one mind for research -building public-private partnerships in brain research via...
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One Mind Portal 2.0 Update V 1.8
Stephen Larson, Chief Information Officer,
One Mind for Research
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Challenge
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• Economic burden of brain disease (US):
• $900 billion / yr (PWC)
• Investments in medical research (US):
• $94 billion in 2003 (JAMA)
• 10x hurdle of efficiency
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Challenge
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Information that is critical to more
efficient medical research are
frequently still locked inside silos:
• Patients
• Clinicians
• Researchers in academia &
industry
• Patient advocates
• Technology developers
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© 2012 One Mind For Research
Disease Expert,Data &
Analytics Partners
PlatformCapabilityPartners
PTSD, Depression & TBI NetworkOne Mind has identified numerous alliance partners committed to accelerating
knowledge and cures and strong networks are being established
Within the PTSD-TBI Network alone, this is a sample of governmental
agencies, organizations and industry partners who have contributed:
• Funding and human resources
• Data sets• Informatics and IT
• Patient and HCP Advocacy support
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© 2012 One Mind For Research
PTSD-TBI Ecosystem Vision
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1 Citizens give consent to use
their patient data, and maintain
ownership and control of PHR
and EHR data via web portal.
2 Researchers and data
scientists use patient data to
conduct analysis and build
models. Findings reported on
the platform for community
use.
3 Clinicians develop improved
diagnoses, preventions and
treatments based on research
results to deliver better care to
patients. Results reported on
platform for community and
care giver use.
Community members play dual
roles of data providers and data
users throughout the cycle
Federated Data
Platform
Citizens
ResearchersClinicians
& Care Givers
Data is collected and
shared continuously in
federated data
platform by all
community members
via “Honest Broker”
system
Standards for data
curation, rules for
access, and common
classification system
set by One Mind
consortium
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Underlying system of
incentives drives
community
engagement and
participation
Incentives
Foundation of Common Data Governance,
Privacy, Legal and Ethical Principles
Citizens are
empowered and
engaged through
education
The working group developed this vision for a technology-enabled data sharing
community focused on the Citizen and united through a federated data platform
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Integrating Research By Connecting People Online
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Patients
Clinicians
Tech Partners
Advocates
Researchers
One Mind
Portal: Creating
common
ground to build
a culture of
shared
understanding
of disease
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Our solution
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Marketplace
Engagement
Data ingestion
Data warehouse
Data analysis
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Data ingestion
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Data ingestion
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Neuroscience Information Framework
and Portal 2.0
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Search Engine
Tiered resource ingestion pipeline
Web services
Encyclo-pedia
User account system
Marketplace
Data ingestion
Data warehouse
Data analysis
Engagement
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tranSMART case study
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Facilitating International Collaborations
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Dr. Geoff Manley
TRACK-TBI 1 ->
TRACK-TBI 2
Dr. Andrew Maas
IMPACT -> Center
TBI / INTBIR
NINDS,
FITBIR,
NIF
INCF
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© 2012 One Mind For Research
Case Study – Dr. Geoff Manley @
UCSF
Chief of Neurosurgery at San Francisco
General Hospital
Professor of Neurosurgery at the
University of California San Francisco
(UCSF).
He is a trauma neurosurgeon with
clinical interests in brain injury, spinal
cord injury and neurocritical critical care.
His translational research interests span
from the laboratory to the bedside.
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© 2012 One Mind For Research
TRACK-TBI Study
TRACK-TBI included 602 subjects with
a history of TBI who presented acutely
to emergency departments in 3 states
and 50 subjects who presented late to a
rehab facility. The majority of these
patients were classified as mild TBI.
Goals:
– Prospectively validate the recently
developed TBI Common Data Elements.
– Collect a highly granular data set that
includes phenotypic, imaging, genomic,
proteomic and multidimensional outcome
data.
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© 2012 One Mind For Research
Case Study – Dr. Geoff Manley @
UCSF
Key questions:
Can tranSMART augment or accelerate data
analysis of TRACK-TBI data?
What are the most desirable analytics to perform on
the TRACK-TBI data via tranSMART?
What use cases beyond what tranSMART provides
would aid analysis of TRACK-TBI data?
What technologies can we bring to bear from One
Mind partners to address additional use cases?
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© 2012 One Mind For Research
TRACK-TBI Case Study
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Case Study
tranSMART
cloud
instance
Data
loading of
TRACK-
TBI
(Thomson
Reuters)
Geoff’s team
(UCSF, others)
Analysis
work
One Mind team
learning, reporting
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© 2012 One Mind For Research
Case Study update
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TRACK-TBI data
set loaded!
Initial analyses run
Broadening to
more collaborators
Focus on deeper
analyses
tranSMART
instance loaded on
AWS
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Next steps
• TBI Knowledge network supports international collaborations
– Built first around tranSMART
– tranSMART users become initial Portal users
– tranSMART becomes an application within the broader
context of the One Mind Portal
• Produce detailed analysis of TRACK-TBI 1 data in tranSMART
• Support efforts to make open source tranSMART more
pluggable
– REST-based web services layer
– Single sign-on
• Continue to align data standards and data collection globally
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Contributions
• Introduced the challenge One Mind for
Research is working to overcome
• Introduced the concept of the One Mind Portal
• Introduced Dr. Manley and the TRACK-TBI
study
• Reported on progress with the TRACK-TBI
case study around tranSMART
• Pointed towards future steps with tranSMART
and the One Mind Portal
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