define.xml round trip using sas clinical data …...title define.xml round trip using sas clinical...

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Copyright © 2014, SAS Institute Inc. All rights reserved. SUPER DEMO: DEFINE.XML ROUND TRIP USING SAS CLINICAL DATA INTEGRATION JULIE MADDOX SAS INSTITUTE PHARMASUG 2014

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Page 1: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

Copyr i g ht © 2014, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

SUPER DEMO: DEFINE.XML ROUND TRIP

USING SAS CLINICAL DATA INTEGRATION

JULIE MADDOX

SAS INSTITUTE

PHARMASUG 2014

Page 2: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Define.xml Machine-readable metadata describing the

format and content of the submission datasets

Can be used as a template to extract(read)

metadata for a new study, or to transmit(write)

metadata about a completed study

Page 3: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xml using SAS Clinical Data Integration

Create a new Study

Read in metadata for domains

Read in Codelists

Read in Value Level Metadata

Page 4: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xmlCreate New Study

Page 5: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xmlCreate New Study

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Page 6: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xmlCreate New Study

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Page 7: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Clinical Data IntegrationDefault Folders and Library Templates

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Page 8: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xml - Domain Metadata

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Page 9: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xml - Domain Metadata

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Page 10: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xml - Domain Metadata

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Page 11: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xml – Codelists

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Page 12: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xml – Codelists

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Page 13: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xml – Codelists

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Page 14: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xml –Create terminology package andassociate it with Study

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Page 15: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xml –Value Level Metadata

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Page 16: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xml –Value Level Metadata

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Page 17: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Reading the Define.xml –Value Level Metadata

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Page 18: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Study, Domains, Codelists, Value-level

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Page 19: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Writing Define.xml file using Clinical Data Integration

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Page 20: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Create Define.xml file document object

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Page 21: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Creating Define file using Clinical Data Integration

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Page 22: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Creating Define file using Clinical Data Integration

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Page 23: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Creating Define file using Clinical Data Integration

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Page 24: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

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Copyr i g ht © 2012, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

Define.xml file from SAS Clinical Data Integration

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Page 25: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

Copyr i g ht © 2013, SAS Ins t i tu t e Inc . A l l r ights reser ve d .

DEFINE.XML

ROUND TRIP

Create Study from Define.xml

Read Domain Metadata from Define.xml

Read Codelists from Define.xml

Read Value Level Metadata from Define.xml

Read Supplemental Documents from Define.xml

Create Define.xml from Clinical Data Integration Metadata

DEFINE.XML

Page 26: Define.xml round trip using sAS Clinical Data …...Title Define.xml round trip using sAS Clinical Data Integration Author Julie Maddox Created Date 6/16/2014 11:48:08 AM

Copyr i g ht © 2014, SAS Ins t i tu t e Inc . A l l r ights reser ve d .sas.com

QUESTIONS ???