reshaping antibody selection: early characterization of large...
TRANSCRIPT
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Reshaping Antibody Selection: Early Characterization of Large mAb Panels
Revamps Lead Identification and Technology Development
Reshaping Antibody Selection: Early Characterization of Large mAb Panels
Revamps Lead Identification and Technology Development
Zimple Matharu and Christine BeeBristol-Myers Squibb Redwood City
Carterra User Group Meeting2019-09-10
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Antibody generation at BMS
Mouse strains Routes of immunization
People
Immunogens
Antibodytechnologies
Dosingregimen
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LSA assays for selection
Capture kinetics
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LSA assays for selection
Coupled Ab kinetics and binning
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Comparison of HT kinetics
kd(1
/s) c
oupl
edAb
s, L
SA
kd (1/s) captured Abs. LSAka
(s) c
oupl
edAb
s, L
SAka (s) captured Abs. LSA
KD(M
) cou
pled
Abs,
LSA
KD (M) captured Abs, LSA
KD (M) captured Abs, Biacore
KD(M
) cap
ture
dAb
s, L
SA
ka (s) captured Abs, Biacore
ka(s
) cap
ture
dAb
s, L
SA
kd(1
/s)
capt
ured
Abs.
LSA
kd (1/s) captured Abs. Biacore
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Binning
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Affinities and epitope communities
120pM
120nM
nd (>125nM)
Low affinity samples can cause errors.
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Replication in groups of related samples
120pM
120nM
nd (>125nM)
Curated binning shows identical behavior of highly related samples.
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Redundancy within communities
related samples, same selection technology, same bin
High redundancy within sample subset→ change selection criteria
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Mouse strains and epitope communities
Much higher diversity observed in red mouse strain.
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Mouse strains and affinities by epitope
120pM 120nM nd (>125nM)
Different mouse strains correlate with different affinities.Red mouse strain produces higher affinities and higher diversity.
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Capturing full diversity in sequence and epitope
Multiple sequence alignment by bin:• harness full diversity by combining
sequencing and binning• choose low sequence liability
upfront• QC binning results
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Capturing full diversity
Multiple sequence alignment by bin:• harness full diversity by combining
sequencing and binning• choose low sequence liability
upfront• QC binning results
Expanded by epitope mapping, cell binding, functional data, biophysical and biochemical characterization,…
Combined with affinities:• understand affinity maturation• evaluate and understand performance of transgenic mouse strains• explore epitope specific binding characteristics• inform immunization and selection technologies
Pick an optimal panel of diversified leads
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Acknowledgements
Haibin ChenGinger RakestrawKe LiMatt TomlinsonGabriel WuJulian LowLore Florin
Flavio SchwarzAndy DengLuhua ZhangRenu JainRalston BarnesGavin Dollinger
Carterra
Sumetha KannanFaisal MalikJohn MajercakErin O’BrienMike HornsbyArvind Rajpal