on again, off again... on again? resistance testing for the management of hcv infection

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The UC San Diego AntiViral Research Center sponsors weekly presentations by infectious disease clinicians, physicians and researchers. The goal of these presentations is to provide the most current research, clinical practices and trends in HIV, HBV, HCV, TB and other infectious diseases of global significance. The slides from the AIDS Clinical Rounds presentation that you are about to view are intended for the educational purposes of our audience. They may not be used for other purposes without the presenter’s express permission. AIDS CLINICAL ROUNDS

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Page 1: On again, off again... on again? Resistance testing for the management of HCV infection

The UC San Diego AntiViral Research Center sponsors weekly presentations by infectious disease clinicians, physicians and researchers. The goal of these presentations is to provide the most current research, clinical practices and trends in HIV, HBV, HCV, TB and other infectious diseases of global significance. The slides from the AIDS Clinical Rounds presentation that you are about to view are intended for the educational purposes of our audience. They may not be used for other purposes without the presenter’s express permission.

AIDS CLINICAL ROUNDS

Page 2: On again, off again... on again? Resistance testing for the management of HCV infection

On#again,#off#again…on#again?##Resistance#tes1ng#for#the#management#

of#HCV#infec1on.#

David#L.#Wyles,#M.D.#Associate#Professor#of#Medicine#University#of#California#San#Diego#

#

Page 3: On again, off again... on again? Resistance testing for the management of HCV infection

Outline#

#1.  HCV#virology,#resistance,#and#assays#2.  What#do#the#clinical#trials#tell#us?#3.  Op1mizing#therapy#and#the#role#of#RAVs#4.  What#does#the#future#hold?#

Page 4: On again, off again... on again? Resistance testing for the management of HCV infection

Case#62#WM#with#HCV#GT1b#and#cirrhosis#(CPT#A5);#prior#breakthrough#on#PEG/RBV+TVR.#Treatment#complicated#by#severe#anemia#and#neutropenia: ##

–  Week#8:#Required#transfusion,#RBV#dose#reduc1on#–  Week#12:#PEG#dose#reduc1on,#GCSF#–  HCV#RNA#127#IU/ml#at#week#4;#viral#BT#at#week#26#

•  Treatment#discon1nued#–  Followbup#HCV#RNA#2.7#million#

Rebtreated#in#a#study#(12#weeks#of#SOF/LDV).#•  #Week#4:#HCV#RNA#<25#IU/mL#(detected)#•  All#subsequent#HCV#RNA#TND#(week#6#and#on)#•  SVR4#f/u:#HCV#RNA#+#

Page 5: On again, off again... on again? Resistance testing for the management of HCV infection

Case#Rebrebtreated#in#the#1118#study#[SOF/LDV#for#24wks#(no#RBV)]#Again#viral#relapse#by#week#4#postbtreatment.##•  HCV#RNA#UD#at#week#4;#undetectable#for#remainder#of#course#•  SVR4#f/u:#AST/ALT#45/67….#

–  HCV#RNA:#253,000#IU/mL#What#to#do#now?#•  Updated#labs:#

–  PLT#61,#Hgb#13.8#g/dL#–  AST/ALT:#59/59,#TB#0.7,#DB#0.3,#ALB#4.1,#INR#1.0#–  Cr#1.29#(prior#1.08)#–  HCV#RNA#1.2#million#

•  U/S:#Nodular#liver,#no#lesions.#12mm#PV,#15cm#spleen.#No#ascites.#Nonbocclusive#R#PVT.#

•  EGD:#grade#1#esophageal#varices##

Page 6: On again, off again... on again? Resistance testing for the management of HCV infection

HCV#Genotypic#Resistance#Sequencing#

Page 7: On again, off again... on again? Resistance testing for the management of HCV infection

The#HCV#lifecycle#favors#resistance#development…but#not#persistence.#

Favors'Resistance'1.  High#viral#turnover#rate#

–  1012#virions/day#

2.  Errorbprone#RNA#polymerase#–  ~1#error#per#10,000#bases#–  Involved#twice#in#replica1on#

3.  No#overlapping#reading#frames#

4.  Moderate#rate#of#infected#hepatocyte#turnover#

Lack'of'Persistence'1.  No#DNA#intermediate#

–  Contrast#to#integrated#HIV#–  Contrast#to#HBV#cccDNA#

2.  No#longblived#cellular#reservoir#known#–  Contrast#latently#infected#

HIV#+#CD4#cells#–  Contrast#to#transfer#of#HBV#

cccDNA#in#dividing#cells#

3.  There#are#excep1ons!#

Resistant#variants#prebexist#in#all#pa1ents#

Page 8: On again, off again... on again? Resistance testing for the management of HCV infection

Modeling#the#resistance#barrier#

•  Prebexistence#of#resistant#variant#explains#their#rapid#emergence##•  Not#all#variants#will#be#“fit”#enough#to#persist#unless#there#is#drug#

selec1ve#pressure#

Rong#L#et#al.#Science#Transl#Med#2010.#

Page 9: On again, off again... on again? Resistance testing for the management of HCV infection

Available#Resistance#Tes1ng#(US)#

•  Ultrabdeep#(or#NGS)#vs#popula1on#(Sanger)#– What#is#available:#1.  LabCorp/Monogram#Biosciences#

•  NGS#with#10%#detec1on#level#reported#

2.  Quest#Diagnos1cs#•  RTbPCR#with#DNA#sequencing##

– Both#assays#now#available#for#GT1#and#GT3##

hpp://www.monogrambio.com/content/hcvbns5abtes1ng##hpp://www.questdiagnos1cs.com/testcenter/testguide.ac1on?dc=TS_HCV_NS5A_Genotype&tabview=true#

#

Page 10: On again, off again... on again? Resistance testing for the management of HCV infection

Examples:#NS3#resistance#genotyping#

Page 11: On again, off again... on again? Resistance testing for the management of HCV infection

Examples:#NS5A#resistance#genotyping#

Page 12: On again, off again... on again? Resistance testing for the management of HCV infection

Characteris1cs#of#HCV#an1viral#classes#Class' An5viral'

Potency'Genotype'Ac5vity'

Resistance'barrier'

FDA'Approved'

NS3#Protease#Inhibitors# +++#to#++++# 1#(and#4)# Low#to#

moderate#

Simeprevir'(2013)#

Paritaprevir'(2014)#

Grazoprevir#(2016)#

NS5B#Nucleoside/1de# ++#to#++++# 1b6# Very#High# Sofosbuvir'

(2013)#

NS5B#Nonbnucleoside# ++#to#+++# 1# Very#low# Dasabuvir'

(2014)#

NS5A#Inhibitors# ++++# 1,#4b6#(+/b#2,3)#

Low#

Ledipasvir'Ombitasvir'

(2014)#Elbasvir#(2016)#

Page 13: On again, off again... on again? Resistance testing for the management of HCV infection

NS3'PI'RESISTANCE'

Page 14: On again, off again... on again? Resistance testing for the management of HCV infection

The#saving#grace#with#PI#resistance?#

Lenz'O.'EASL'2014.'

91%'of'nonSVR'with'resistance'1a:'R155K#+/b#Q80K#1b:'D168V#

Page 15: On again, off again... on again? Resistance testing for the management of HCV infection

Real#World#Data:#Impact#of#prior#PI#therapy?#

•  PI#failure=#PEG/RBV#+#PI#•  Resistance#tes1ng#results#not#available#– Majority#did#not#have#baseline#tes1ng#

•  Prior#PI#failure#was#associated#with#a#decreased#SVR#rate#–  OR:#0.4#(0.2b0.9)#

Nelson#D.#ISVHLD#2015.#Jensen#D.##45#AASLD#2014.#

78#

90#

0#

20#

40#

60#

80#

100#

PI#failure# No#PI#

SVR1

2'(%

)'623#92#

SOF'+'SMV'(±"#$)'

Gane%EJ.%#38%AASLD%2015.%

Page 16: On again, off again... on again? Resistance testing for the management of HCV infection

Lack#of#Q80K#impact#with#the#“appropriate”#dura1on#of#therapy#

97#

84#

96#

73#

0#

20#

40#

60#

80#

100#

12#weeks# 8#weeks#

Q80Q# Q80K#

SVR1

2#(%

)#

Kwo#P.##14##EASL#2015.#Lawitz#E.##LP04#EASL#2015##

92#

74#

0#

20#

40#

60#

80#

100#

12#weeks#

Q80Q# Q80K#

OPTIMISTU1' OPTIMISTU2'

Data#are#lacking#with#24#weeks#of#SOF/SMV#therapy.#

Page 17: On again, off again... on again? Resistance testing for the management of HCV infection

NS3#Resistance#tes1ngb#where#does#it#fit?#

•  Significant#baseline#NS3#RAVs#are#rare#–  Rou1ne#baseline#tes1ng#not#needed#

•  There#is#no#clear#impact#of#Q80K#on#SOF+SMV#when#using#approved#dura1ons#–  Data#are#lacking#with#24#weeks#in#cirrho1cs#

•  Well#studied#nonbPI#containing#op1ons#are#available#

•  If#you#need#to#use#an#NS3#PI#soon#axer#PI#failure#–  NS3#resistance#tes1ng#should#be#done#Marks%K.%#644%CROI%2015.%–  Determine#dura1on#in#retreament#with#triple#DAA#regimens?#

Page 18: On again, off again... on again? Resistance testing for the management of HCV infection

NS5A'RESISTANCE'

Page 19: On again, off again... on again? Resistance testing for the management of HCV infection

NS5A#Virology#

•  Mul1func1onal#phosphoprotein#–  Replica1on#complex/membranous#

web#forma1on#–  RNA#binding/replica1on#–  Virion#assembly/secre1on#

•  Homodimer#–  Mul1meric#form?#

•  Resistant#variants#impact#inhibitor#binding#–  Y93H#(Kwon%HJ.%PlosONE%2015)%

Rupp#D.#Seminars#in#Liver#Disease#2014.#

Page 20: On again, off again... on again? Resistance testing for the management of HCV infection

NS5A#structure#and#RAV#posi1ons#

Zeuzem#S.##91#AASLD#2015.#

Page 21: On again, off again... on again? Resistance testing for the management of HCV infection

NS5A#Resistance#Overview#

•  Baseline#polymorphisms#associated#with#resistance#are#rela1vely#prevalent#(~10%)#– They#impact#responses#in#select&se'ngs&

•  Currently#available#NS5A#inhibitors#suffer#from#broad#crossbresistance#at#key#posi1ons#– Q30R,#L31M/V,#Y93H/N#

•  NS5A#variants#persist#for#prolonged#periods#•  Selected#NS5A#RAVs#impact#rebtreatment#responses#

Page 22: On again, off again... on again? Resistance testing for the management of HCV infection

Broad#crossbresistance#with#“early#genera1on”#NS5As#

FoldUchange' 1a' 1b'

M28T# Q30R# L31M/V# Y93H/N# L31V# Y93H/N#

LDV# 20x# >100x# >100x/#>100x#

>1,000x/#>10,000# >100x/bb#

Ombitasvir# >1000x# >100x#<3x# >10,000x/#

>10,000x# <10x# 20x/50x#>100x#

DCV# >100x# >1000x# >100x/#>1000x#

>1,000x/#>10,000x# <10x# 20x/50x#

Elbasvir# 20x# >100x#>10x# >1,000x/##

>1,000x# <10x# >100x/bb#>100x#

Velpatasvir# <10x# <3x# 20x/50x# >100x/#>1000x# <3x/bb#

ACHb3102# 30x# 20x# <10x# >100x/>100x# <3x/<3x#

ABTb530# <3x# <3x# <3x# <10x/<10x# <3x# <3x/<3x#

MKb8408# <10x# <10x# <10x# <10x# <10x# <10x#

Wang#C.#AAC#2012.#Cheng#G.##1172.#EASL#2012.##Zhao#Y.##A845#EASL#2012.#Yang#G.#EASL#2013.#Ng#T.##639#CROI#2014.#AsantebAppiah#E.#AASLD#2014.#

Page 23: On again, off again... on again? Resistance testing for the management of HCV infection

A#word#on#NS5A#resistance#terminology#

The#prevalence#of#baseline#NS5A#resistance#varies#widely#in#the#literature.#•  RAPs:#Resistance#associated#polymorphisms#

–  ANY#nonbconsensus#amino#acid#at#a#site#associated#with#resistance#to#ANY#NS5A#inhibitor#

•  Class#RAVs:#Resistance#associated#variants#–  Specific#amino#acid#subs1tu1ons#associated#with#resistance#to#ANY#NS5A#inhibitor#

•  Drugbspecific#RAVs:#–  Specific#amino#acid#subs1tu1ons#associated#with#resistance#to#a#par1cular#NS5A#inhibitor#

•  Different#foldbchange#cutboffs#have#been#used#(2x,#5x,#10x#etc)#

Page 24: On again, off again... on again? Resistance testing for the management of HCV infection

Baseline#NS5A#RAVs:#A#moving#target#

Sarrazin#C.##1926#AASLD#2014.#

Page 25: On again, off again... on again? Resistance testing for the management of HCV infection

Baseline#NS5A#RAVs:#A#moving#target#

1a#

1b#

Jacobson#I.##LBb22#AASLD#2015.#

Page 26: On again, off again... on again? Resistance testing for the management of HCV infection

Baseline#NS5A#resistance#and#SOF/LDV#•  Deep#sequencing#analysis#of#baseline#samples#(n=1904)#in#phase#2/3#SOF/LDV#studies#

Sarrazin#C.##1926#AASLD#2014.#

No#RAVs#

NS5A#RAVs#

GT1'(n=2137)'

84%#16%#

GT'1b'(n='529)'

84%#16%#

GT'1a'(n=1602)'97%#SVR12#

93%#SVR12#

96%#SVR12#

98%#SVR12#

92%#SVR12#

95%#SVR12#

Page 27: On again, off again... on again? Resistance testing for the management of HCV infection

Baseline#NS5A#resistance#and#SOF/LDV#

Sarrazin#C.##1926#AASLD#2014.#

<100X#

>100X#

No#RAVs#

Page 28: On again, off again... on again? Resistance testing for the management of HCV infection

Impact#of#baseline#NS5A#RAVs#in#pa1ents#with#cirrhosis#treated#with#SOF/LDV#

Impact#of#subtype#and#foldbchange#

98# 97#

85#96#

0#

20#

40#

60#

80#

100#

1a# 1b#

No#RAVs# RAVs#

40# 52#263# 154#

100# 100#92#

97#100#

67#

0#

20#

40#

60#

80#

100#

None# <100x# >100x#

Naïve# Experienced#

70# 193# 3# 11# 12# 15#

Sarrazin#C.##P0773.#EASL#2015.#

SVR1

2#(%

)#

SVR12#combined:#98%#no#RAVs#vs#89%#RAVs#[@15%#level]#

Page 29: On again, off again... on again? Resistance testing for the management of HCV infection

Impact#of#baseline#NS5A#RAVs#in#pa1ents#with#cirrhosis#treated#with#SOF/LDV#

Impact#of#dura1on#and#RBV#

Sarrazin#C.##P0773.#EASL#2015.#

Page 30: On again, off again... on again? Resistance testing for the management of HCV infection

Expanded#analysis:#5,937#subjects#across#the#globe#treated#with#SOF/LDV#

90# 89# 87#

99# 96#100#

0'

20'

40'

60'

80'

100'

TE#NC:#12wks# TE#Cirr:#12wks#+#R# TE#Cirr:#24wks#

Impact'of'NS5A'RAVs*'with'select'SOF/LDV'regimens'

RAVs# No#RAVs#

Zeuzem#S.##91#AASLD#2015.#

SVR1

2#(%

)#

88# 300# 214#66# 84#15#

*LDV#RAVs#@1%#cutoff#

Page 31: On again, off again... on again? Resistance testing for the management of HCV infection

Impact#of#NS5A#RAVs#on#PI/NS5A#

77#

58#

94#

0#

20#

40#

60#

80#

100#

No#RAVs# RAVs#

All# 1a# 1b#

37# 19# 18#

76#

68#

89#

0#

20#

40#

60#

80#

100#

No#RAVs# RAVs#

All# 1a# 1b#

50# 31# 18#

Zeuzem#S.#Annals#Intern#Med.#2015.#Kwo#P.##P0886#EASL#2015.#

Treatment'naïve:'GZP/EBR'x'12'wks'

Treatment'experienced:'12U16'wks'±&"#$''

Grazoprevir/Elbasvir'

SVR1

2#(%

)#

SVR1

2#(%

)#

Integrated%phase%2/3%analysis:%Baseline%NS5A%RAVs%(>5xEC50)%predicVve%of%nonYSVR%with%12%weeks%of%treatment.%Zeuzem%S.%#700.%AASLD%2015.%

Page 32: On again, off again... on again? Resistance testing for the management of HCV infection

Impact#of#baseline#NS5A#RAVs#in#GT1a#pa1ents#treated#with#GZP/EBR#

EBR#RAVs# NS5A#Class#RAVs# EBR#RAVs# NS5A#Class#RAVs#Popula5on'Sequencing' Next'Genera5on'Sequencing'(1%'level)'

No#RAVS:#414/438#(95%)#

No#RAVS:#432/438#(80%)#

No#RAVS:#396/439#(90%)#

No#RAVS:#289/439#(65%)#

5%# 20%# 10%# 35%#

98# 98# 98# 98#

58#

86#72#

91#

0#

20#

40#

60#

80#

100#

Pa1ents#without#RAVs#

Pa1ents#with#RAVs#

SVR1

2'(%

)'

EBR#RAVs# NS5A#Class#RAVs# EBR#RAVs# NS5A#Class#RAVs#

405/ 414

14/ 24

345/ 352

74/ 86

389/ 396

31/ 43

284/ 289

136/ 150

Popula5on'Sequencing' Next'Genera5on'Sequencing'

EBR#RAVs#=#RAVs#with#>5x#fold#shix#in#EBR#EC50#

Regimen:#GZP/EBR#x#12#weeks #GT1a#naïve/relapsers#

Jacobson#I.##LBb22#AASLD#2015.#

Page 33: On again, off again... on again? Resistance testing for the management of HCV infection

Impact#of#baseline#NS5A#RAVs#in#pa1ents#treated#with#GZP/EBR#

•  Impact#of#NS5A#RAVs#on#TE#(nonbresponder)#GT1a#treated#with#GZP/EBR#x#12#wks#–  EBR#RAVs#(popula1on):#97%#vs.#29%#(No#RAVs#vs.#RAVs)#

#•  Extension#to#16b18#weeks#with#RBV#appears#to#negate#the#impact#of#NS5A#RAVs#

#•  Baseline#RAVs#have#no#significant#impact#in#GT#1b##•  Popula1on#sequencing#iden1fies#the#vast#majority#of#significant#RAVs#

Jacobson#I.##LBb22#AASLD#2015.#

Page 34: On again, off again... on again? Resistance testing for the management of HCV infection

GZP/EBR#efficacy#in#GT1a:#Resistance#is#all#that#mapers!?#

Zeuzem#S.##700#AASLD#2015.#

p#value#eOR#(95%#CI)#

GT#1a##TNbPEP#

Page 35: On again, off again... on again? Resistance testing for the management of HCV infection

Same#story#with#GT1a#treatment#experienced#pa1ents#

Zeuzem#S.##700#AASLD#2015.#

Page 36: On again, off again... on again? Resistance testing for the management of HCV infection

Considera1ons#for#NS5A#resistance#tes1ng#in#DAA#naïve#pa1entsb#GT1a#only#•  SOF/LDV#

–  No#apparent#role#in#treatment#naïve#pa1ents#–  Could#baseline#tes1ng#be#used#to#“op1mize”#therapy#in#TE#pa1ents,#par1cularly#those#with#cirrho1cs?##

•  24#wks#+#RBV#for#all#TE#cirrho1cs#with#baseline#NS5A?#–  Zeuzem%S.%#91%AASLD%2015.#

•  Overtreatment#of#many#pa1ents#•  GZP/EBR#

–  Baseline#resistance#tes1ng#accurately#defines#those#who#can#get#12#weeks#without#RBV#

•  Appears#to#apply#across#most#groups#studied#–  Zeuzem%S.%#700.%AASLD%2015.#

•  16#weeks#with#RBV#negates#the#impact#of#baseline#RAVs#–  Jacobson%I.%#LBY22.%AASLD%2015.%

•  3D#+#RBV#–  Baseline#resistance#data#not#available#

Page 37: On again, off again... on again? Resistance testing for the management of HCV infection

Baseline#vs#Selected#RAVs#

•  Is#there#a#difference?#– Propor1on#in#quasispecies#– Compensatory/associated#muta1ons#–  Impact#on#response#– What#role#does#the#host#play?#

Page 38: On again, off again... on again? Resistance testing for the management of HCV infection

Rate#of#selec1on#of#NS5A#resistance#upon#virologic#failure#

•  Varies#by#regimen#and#dura1on#–  PI#based#

•  Vedroprevir#+#tegobuvir#+#LDV:#>99%#•  GZR/EBR:#90%##•  3D:#68%#

– Nucleo1de#based#•  SOF/LDV:#75%#

–  8#weeks:#65%#

– Nucbbased#triple#•  SOF/5816/9857#(≤#6#weeks):#0%#(n=15)#•  SOF#+#GZR/EBR#(≤#8#weeks):#37%#(n=30)#

Kitrinos#K.##AASLD#2014.Sulkowski#M.#Lancet#2014.#Lawitz#E.#Lancet#2014.#Sarrazin#AASLD#2014.#Kowdley#K.#NEJM#2013.#Gane#E.#EASL#2015.#Poordad#F.#EASL#2015.#

Page 39: On again, off again... on again? Resistance testing for the management of HCV infection

Durability#of#treatment#emergent#NS5A#RAVs#

Wyles#D,#DvorybSobol#H.#EASL#2015#

Page 40: On again, off again... on again? Resistance testing for the management of HCV infection

RAV#persistence#axer#3D#treatment#

Krishnan#P.##O057#EASL#2015.#

RAV' FU'week'24' FU'week'48'NS3/4A'(all)' 31/67'(46%)' 5/57'(9%)'##D168# ##21/55#(38%)# ##2/53#(5%)#

##R155K# ##10/13#(77%)# ##2/7#(29%)#

NS5A'(all)' 68/70'(97%)' 49/51'(96%)'##M28V/T# ##32/33#(97%)# ##21/21#(100%)#

##Q30E/K/R# ##38/41#(93%)# ##25/28#(89%)#

NS5B'(all)' '33/44'(75%)' 20/35'(57%)'##S556G# ##27/30#(90%)# ##17/22#(77%)#

Page 41: On again, off again... on again? Resistance testing for the management of HCV infection

NS5A#RAVs#are#associated#with#retreatment#failure#

71'

100'

60'

0#

20#

40#

60#

80#

100#

Combined# No#RAVs#####RAVs#

18/30'11/11'29/41'

SOF/LDV#

12# 24#0#

N=41# SVR12#

weeks#100' 80'

33'

0#

20#

40#

60#

80#

100#

Q30R#or#M28T#

L31M# Y93H/N#

Lawitz E. #O005 EASL 2015.

5/5' 4/5' 2/6'

SV

R12

(%)

Page 42: On again, off again... on again? Resistance testing for the management of HCV infection

Is#resistance#a#unique#considera1on#in#DAA#failures?#YES.#

1.  DAA#resistance#is#frequently#selected#on#failure#2.  Resistance#muta1ons#to#some#DAA#classes#

(NS5A)#persist#for#prolonged#dura1ons#3.  RAVs#are#associated#with#retreatment#failure##What#we#don’t#know#for#sure#is:#Selec1on#of#retreatment#therapy#based#on#resistance#tes1ng#(selec1on#of#nonbcross#resistant#regimens)#will#result#in#improved#treatment#success.#

Page 43: On again, off again... on again? Resistance testing for the management of HCV infection

Considera1ons#in#pa1ents#who#failed#a#DAAbbased#regimen#

•  Was#ini1al#therapy#subbop1mal#(or#subbmaximal)?#–  Dura1on#–  RBV#use#

•  What#specific#medica1on#classes#were#used#– What#role#dose#resistance#play?#

•  Stage#of#liver#disease/host#characteris1cs#•  Indica1ons#of#other#problems#

–  Adherence?#–  Significant#drug#interac1ons?#

•  Terrault%N.%#94%AASLD%2015.%–  Immunosuppression?#

Page 44: On again, off again... on again? Resistance testing for the management of HCV infection

When#to#do#NS5A#resistance#tes1ng?#

DAA#naïve#pa1ents:#•  Baseline#tes1ng#should#be#considered#prior#to#use#of#GZP/EBR#in#GT#1a#pa1ents.#– Alterna1ve#regimens#of#16#weeks#+#RBV#if#EBR#RAVs*#found#at#baseline#

DAAbexperienced#pa1ents#(IFNbfree#DAA#failures)#•  Resistance#tes1ng#recommended#(my#opinion)#•  Based#on#the#results…#

*#RAVs#at#posi1ons#28,#30,#31,#and#93#

Page 45: On again, off again... on again? Resistance testing for the management of HCV infection

DAA#failure#

No#NS5A#RAVS#

SOF/LDV#+#RBV#

24#weeks#No#Q80K#(or#other#PI#RAVs)#

SOF#+#SMV#+#RBV#24#weeks#

+#NS5A#RAVs#(Q30,#L31,#H58,#Y93)#

SOF#+#SMV#+#RBV#24#weeks#(even#if#Q80K)#

+NS5A#RAVs#+#NS3#RAVs#(R155,#A156,#D168)#

Despera1on#1me#

3D#+#SOF#(LBY20)#SOF#+#SMV#+#DCV#+#RBV#

SOF/LDV#+#RBV#

Inves1ga1onal#Triple#

Regimens#

Genotypic#resistance#tes1ng#

Page 46: On again, off again... on again? Resistance testing for the management of HCV infection

Triple#(or#quad)#therapy#to#the#rescue?#

•  CbSWIFT#Retreatment:#– GZP/EBR#+#SOF#+#RBV#x12wks#(n=23)#–  100%#SVR12#(including#9/9#with#NS3+NS5A#RAVs)#

Lawitz%E.%LBY12%AASLD%2015%

•  3D#+#SOF#(±RBV)#x#12#wks:#–  SVR12#93%#(14/15);#12/13#GT1a,#2/2#GT1b#

Poordad%F.#LBY20%AASLD%2015%

•  SOF/VEL#+#GSb9857:#–  6#wks:#No#apparent#impact#of#baseline#RAVs#on#SVR#–  8#wks:#Decreased#response#with#baseline#RAVs#

Gane%EJ.%#713.%AASLD%2015.%Gane%EJ.%#38.%AASLD%2015.%

%

Page 47: On again, off again... on again? Resistance testing for the management of HCV infection

Role#of#Resistance#in#GT3#Responses#

•  SOF+DCV#x#12#weeks#(ALLYb3)#–  54%#SVR12#with#baseline#Y93H#(7/13)#– ALLYb3+#SVR12:#93%#(38/41)#vs.#88%#(7/8)#(No#RAVs#vs.#RAVs)#

Leroy%V.%LBY3%AASLD%2015%•  SOF+VEL#x#12weeks#(ASTRALb3)#

–  SVR12:#97%#(225/231)#vs.#88%#(38/43)#(No#RAVs#vs.#RAVs)#–  Y93H:#84%#SVR12#(21/25)#

%Mangia%A.%NEJM%2015.%

•  GZP/MKb3682/MKb8408#(CbCREST#1#&#2):#–  45%#(5/11)#vs.#97%#(72/74)#[NS5A#RAVs#vs#not]##

%Gane%EJ.%LBY15.%AASLD%2015%

Nelson#D.#Hepatology#2015.#

Page 48: On again, off again... on again? Resistance testing for the management of HCV infection

Retreatment#study#op1ons#at#UCSD#

•  A5348#•  POLARISb1:#A#Phase#3,#Global,#Mul1center,#Randomized,#

DoublebBlind,#PlacebobControlled#Study#to#Inves1gate#the#Safety#and#Efficacy#of#Sofosbuvir/Velpatasvir/GSb9857#FixedbDose#Combina1on#for12#Weeks#in#DirectbAc1ng#An1viralbExperienced#Subjects#with#Chronic#HCV#Infec1on#

•  MKb021#Study:#A#Phase#II,#Randomized,#OpenbLabel#Clinical#Trial#to#Study#the#Efficacy#and#Safety#of#the#Combina1on#Regimen#of#MKb3682B#(MKb5172#+#MKb3682#+#MKb8408#Fixed#Dose#Combina1on#(FDC))#in#Subjects#with#Chronic#HCV#GT1#or#GT3#Infec1on#who#have#failed#a#Direct#Ac1ng#An1viral#Regimen#

Page 49: On again, off again... on again? Resistance testing for the management of HCV infection

A5348###'

Phase'II'Trial'of'Retreatment'Strategies'for'DifficultUtoUTreat'Hepa55s'C'Virus'(HCV)Uinfected'Individuals'Who'Have'Failed'Prior'

Direct'Ac5ng'An5viral'(DAA)Ubased'Regimens'''

Protocol#Cobchairs:# #Annie#Luetkemeyer,#MD## # #Jennifer#Kiser,#PharmD#

&#

Page 50: On again, off again... on again? Resistance testing for the management of HCV infection

A5348 Study Design 12 24 Study Weeks

n= 20 SVR12 SOF/LDV +

RBV

0

N = 40 SOF treatment

experienced limited to SOF/SIM, SOF/RBV, SOF/PEG/

RBV

SVR12

36

n = 20

•  Phase II study, evaluating retreatment strategies for SOF-failures •  Genotype 1, HIV/HCV co-infected •  Cirrhotic patient permitted (CPT-A only), no cap on number

participating •  PK evaluation of participants on Tenofovir + ritonavir-boosted PI: TFV

levels off and on SOF/LDV. (DIFFERENT FROM DBS- every visit) •  Low intensity PK at entry and week 4: 3 blood draws (0,1,4

hours)- no need for GCRC •  PK participation required for first 15 on PI/r/tenofovir & 15 spots

reserved for those on PI/r/TDF x 3 months

SOF/LDV

Nested%PK%of%TFV%in%r/PI,%n=15%%

4

PK'

Page 51: On again, off again... on again? Resistance testing for the management of HCV infection

Inclusion#Criteria:#HIV##•  HIV+##•  HIV#Treatment:#

–  On#stable#ART#regimen#x#>8#weeks#with#CD4#>#200#and#HIV#VL#<#50#within#42#days#of#entry#or#

–  No#ART#but#CD4>500#or%–  #Elite#controller#with#CD4#>#200#and#with#all#HIV#RNA#<#500#in#48#weeks#prior#to#study#entry#

•  Most#ART#permiped#–  efavirenz,#rilpivirine,#raltegravir,#dolutegravir,#tenofovir,#abacavir,#3TC/FTC,#RTVbboosted#atazanavir,#RTV#boosted#darunavir#(both#800#mg#QD#and#600#mg#BID#permiped).#

–  NOTE:#PrioriVzing%enrollment%of%parVcipants%on%PI/r/Tenofovir%:%reserving%15%spots%for%the%first%3%months%aeer%study%opens%#

Page 52: On again, off again... on again? Resistance testing for the management of HCV infection

Inclusion#Criteria(2):#HCV#•  HCV#Genotype#1#only#•  Prior#virologic#failure#on#one#of#the#following#

–  Sofosbuvir/Ribavirin#(with#or#without#interferon)#–  Sofosbuvir/Simeprevir#(with#or#without#ribavirin)##

•  Cirrho1cs#permiped#(without#prior#decompensa1on:#ascites,#variceal#bleeding,#encephalopathy)##

•  Cirrhosis#assessment#required#but#biopsy#should#not#be#necessary ##– Algorithm:#Fibrosure/APRI#b>#Fibroscan#bbb#>#biopsy##

Page 53: On again, off again... on again? Resistance testing for the management of HCV infection

ASTRALb1:#SOF/VEL#for#12#weeks#No#“room”#for#resistance#impact?#

99' 98' 99' 100' 100' 97' 100'

0#

20#

40#

60#

80#

100#

SVR1

2#(%

)#

618'624'

206'210'

117'118'

104'104'

116'116'

34'35'

41'41'

Total# 1a# 1b# 2# 4# 5# 6#

Genotype#

32%#treatment#experienced#(99%#SVR12);#19%#cirrhosis#(99%#SVR12)#Feld#JJ.#NEJM#2015.#

Wk'0' Wk'12' Wk'24'

SVR12'#SOF/VEL'N='624'

Placebo# #SOF/VEL'N='116''

Page 54: On again, off again... on again? Resistance testing for the management of HCV infection

Summary#

•  Addi1onal#data#are#needed,#par1cularly#in#the#seÉng#of#DAA#failure,#to#define#the#role#of#resistance#tes1ng#in#deciding#best#therapy.#

•  Most#prominent#roles#currently:%– Deciding#on#immediate#retreatment#approaches#for#pa1ents#failing#NS5Abcontaining#regimens#

– Prior#to#GZP/EBR#to#define#appropriate#course#•  In#the#future#resistance#tes1ng#may#play#a#role#in#deciding#how#long#to#treat#as#well#as#what#to#use#

Page 55: On again, off again... on again? Resistance testing for the management of HCV infection

hpp://www.nature.com/ki/journal/v62/n5/fig_tab/4493262f1.html#

UDS!#

Sanger!#

NS5A!#

NS3#+#NS5A!#

Cirrhosis!#DAA#

failures!#

THE#HCV#RESISTANCE#ELEPHANT#