nematode extraction methods: baermann funnel and modified baermann techniques kavitha govindasamy...

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Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L .Mendes

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Page 1: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Nematode Extraction Methods:Baermann Funnel and Modified Baermann Techniques

Kavitha GovindasamyJimmy R.RichMaria L .Mendes

Page 2: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

A Plant-Parasitic Nematode

Page 3: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Sampling for Nematodes

Sampling and extracting of nematodes serves two purposes

Diagnosis a current problem Predict a future problem

Page 4: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Objectives of sampling and extraction

Nematode identification Population estimation Diagnose a nematode disease Make management decisions Regulatory purposes Research and surveys

Page 5: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Some Common Nematode Extraction Methods

Soil samples Baermann funnel Modified Baermann funnel Root Samples Jar incubation and sieving Blending and sieving Foliar samples Punching and incubating Scissors technique

Page 6: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Soil Extraction Techniques: Baermann Funnel

Principle

Extraction based on the active movement of the nematodes (motility dependent method)

Page 7: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Materials required

Funnel Funnel stand Wire mesh Tissue paper/ coffee filter Rubber or plastic tube Clamp or spring clip Beaker or vial Plastic drink cup cover

Page 8: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Baermann Funnel set up

Soil sample over wire mesh

Funnel

Beaker

Clamp

Rubber tubing

Clamp to hold funnel

Page 9: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Begin Baermann funnel setup

Page 10: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Add the soil sample to the coffee filter or tissue paper

Page 11: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Place the sample on the funnel

Page 12: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Cover the tissue over the soil

Page 13: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Incubate for 48 hours and collect the nematodes

Page 14: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Collect nematodes in a beaker

Page 15: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Advantages and Limitations

Advantages Recovery of clean, live samples Sieves not needed Inexpensive to constructLimitations Not effective for inactive nematodes Recovery percentages may be low

Page 16: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Modified Baermann Funnel Baermann trays (Whitehead & Hemming’s modification, 1964)

Principle

Extraction based on the active migration of the nematodes (motility dependent method)

Page 17: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Materials required

Pan or tray Wire mesh Tissue paper, coffee filter Squeeze bottle 500 mesh sieve

Page 18: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Add water to the dish

Page 19: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Place soil on tissue paper

Page 20: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Place tissue paper on the wire mesh

Page 21: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Fold the tissue over soil, add water

Page 22: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Completed technique, ready for incubation

Page 23: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Incubate at room temperature for 3 days

Page 24: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Following incubation, remove wire mesh from the dish

Page 25: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Pour water into sieve

Page 26: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Rinse nematodes from the sieve

Page 27: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Advantages and Limitations

Advantages Recovery of clean, live samples Inexpensive to construct Materials readily available

Limitations Fine soil particles cloud sample Lack of aeration can be a problem Sieves are needed to concentrate

nematodes

Page 28: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

Acknowledgments Janete Brito, Department of Plant Industry, Gainesville,

Florida Frank Woods, Nematode Assay Lab, University of

Florida, Gainesville, Florida Joey Orajay, Entomology and Nematology Department,

University of Florida, Gainesville, FL

Page 29: Nematode Extraction Methods: Baermann Funnel and Modified Baermann Techniques Kavitha Govindasamy Jimmy R.Rich Maria L.Mendes

For additional information or comments, please contact

[email protected] [email protected] [email protected]