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Methods: Quantitative Techniques OEST 740 050608 050608

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Page 1: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Methods: Quantitative QTechniques

OEST 740050608050608

Page 2: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Conventional Techniques

Dry weightTetrazolium Reduction Assay

Tetrazolium salts – colorimetric determinates measured spectrophometricallyReduced by mitochondrial ydehydrogenases

MTT – violet – DMSOXTT – brown – easier –water soluble product

Biofilm formation Hawser & Douglas 1994

Page 3: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Conventional TechniquesRadiolabling

I i f [3H] L iIncorporation of [3H] LeucinePrecipitated by TCA and radioactivity measured Used to assess the effects of antibiotics, biofilm formation Dix et al. 1988

E. coli, Candida spp.

Hawser & Douglas 1994

Page 4: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Conventional Techniques

Imaging(ex. Confocal Laser Scanning Microscopy)

Thickness, cell density, composition

Cell countsDirect viable cell counts (DVC)

To asses disinfection efficiency

Plate countsEstimate survival populations after disinfection

Page 5: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

MBEC AssayRelies on CFU’s as a proxy for the presence

f i bi l bi filof a microbial biofilmAssumes bacteria are only present if they formed a biofilmPro: high-throughput, commercially g g p , yavailableCon: does not delineateCon: does not delineate other effects

Page 6: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

MBEC AssayMBEC AssayPrimarily utilized to analyze the effects of chemical treatment on biofilm formation.

Harrison et al. 2005

Page 7: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

MBEC Assayy

Harrison et al 2005Harrison et al. 2005

Page 8: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

MBEC Assay

Relies on the recovery of attached cells from substratum exposed to chemical treatment.

Harrison et al. 2005

Page 9: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

MBEC Assay

Provides 3 comparison measurements in each experiment: MIC, MBC and MBEC

Harrison et al. 2005

Page 10: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

MBEC Assayy

Growth of bacterial biofilms in MBEC assay have been found to be very reproducible

Harrison et al. 2005

Page 11: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Electrochemical Impedancemetry

Electrochemical Impedance SpectroscopyBacterial adhesion and biofilm proliferationUtilizes a one-compartment, 3-electrode cellp ,

Working electrodesGrids - colonizedCoupons – non- colonized

Can account for non-specific adsorption of substancesof substances Dheilly et al. 2008

Page 12: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Electrochemical ImpedancemetryImpedance could be correlated to biofilm gro th time and confirmed b CLSMgrowth time and confirmed by CLSM

Dheilly et al. 2008

Page 13: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Electrochemical ImpedancemetryCan provide real-time monitoring of both biofilm formation and gro thbiofilm formation and growth.

P. aeruginosa

Dheilly et al. 2008

Page 14: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Crystal violetApplied to pre-formed biofilms tobiofilms to assess biofilmformation.Dissolvedwith ethanol MeasuredMeasured spectrophoto-metrically

O’Toole

Page 15: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Crystal violet

Biofilm formation of avirulent and WTBiofilm formation of avirulent and WT strain of B. pertussis.

Setta et al. 2007

Page 16: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Fourier Transform Infrared SSpectroscopy

Setta et al. 2007

Page 17: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Fourier Transform Infrared SpectroscopySpectroscopy

Setta et al. 2007

Page 18: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Alamar Blue

Redox indicatorAntibiotic susceptibility testingSimple and amendable to highSimple and amendable to high-throughput technologies.

Pettit et al. 2005

Page 19: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

Alamar Blue

Method verified using XTT reduction and CFU/ml

Pettit et al. 2005

Page 20: Methods: Quantitative Techniques - University of Hawaiimcooney/oest740/Biofilms_Methods_3_ppt.pdfSummary The importance of biofilm formation and the roles it plays inand the roles

SummaryThe importance of biofilm formation and the roles it plays in biocorrosionand the roles it plays in biocorrosionand antibiotic resistance has lead to the advancement of several quantitativeadvancement of several quantitative methods.

detect the formation of biofilms susceptibility to different chemical agents.

Despite advances conventional biofilm techniques remain invaluable to thetechniques remain invaluable to the verification of new methods.