meri snowdon what’s all this mesh? an introduction to medical subject headings
TRANSCRIPT
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Meri Snowdon
What’s all this MeSH?
An introduction toMedical Subject Headings
www.bradfordvts.co.uk
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Meri Snowdon
From the guru of EBM -
‘MEDLINE is the best general source of current best evidence at present because of its breadth and constant maintenance. Thus, it is important to evidence-based practice that clinicians develop and hone MEDLINE searching skills and acquire local access.’
Evidence-based Medicine: how to practice & teach EBM - Sackett D L et al 1998
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Meri Snowdon
Medline
Library (Ovid windows) Hospital network (Knowledge
Finder) BMA (Ovid web) PubMed (web) Internet Grateful Med (web) Other (Silver Platter, Dialog .....)
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Meri Snowdon
Three great lies ...
The cheque is in the post
Of course I’ll still respect you in the morning
MeSH is exciting
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Meri Snowdon
MeSH
Removes the uncertainty– Have I thought of all the synonyms?– Have I tried all the spellings?– Have I included all the variants?– Did the author use my term(s) at all?
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Meri Snowdon
Playing the game
The indexers set the rules - you have to play by them!
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Meri Snowdon
From broad to specific
Start off by being inclusive - keep it broad
THEN narrow it down by using limits
Narrowing too soon will make you miss things
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Meri Snowdon
The tree structure
Respiratory tract diseases– Bronchial Diseases
Asthma– Asthma, Exercise-Induced– Status Asthmaticus
– Ciliary Motility Disorders ....................
– Laryngeal Diseases ......................
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Meri Snowdon
No misspelt MeSH
MeSH terms are never misspelt as they are entered automatically not manually
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Meri Snowdon
The most specific term
Intestinal neoplasms 591– Cecal neoplasms 136– Colonic neoplasms 4929– Duodenal neoplasms 385– Ileal neoplasms 227– Intestinal polyps 260– Jejunal neoplasms 189– Rectal neoplasms 2189
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Meri Snowdon
Exploding
Bronchial Diseases– Asthma
Asthma, Exercise-Induced
Status Asthmaticus
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Meri Snowdon
Difficult asthma (a letter)*Asthma/px [Psychology]Asthma/th [Therapy]ChildHumanPractice GuidelinesPsychology, Social
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Meri Snowdon
Focus (& textwords)
1 *asthma 75172 asthma/ 91083 asthma.tw. 97954 1 not 3 10005 2 not 3 17806 3 not 2 2467
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Meri Snowdon
Friedrich Wilhelm I and porphyria
‘The diagnosis of porphyria was not recognized then and other names were used such as ..... asthma spasmodica flatulentum .....’
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Meri Snowdon
Subheadings for Asthma classification complications diagnosis epidemiology prevention & control psychology surgery ...........................
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Meri Snowdon
Exploding subheadings
Therapeutic use tu.xs.
– administration & dosage
– adverse effects– contraindications– poisoning
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Meri Snowdon
Exploding subheadings
Diagnosis di.xs
– pathology– radiography– radionuclide
imaging– ultrasonography
Pharmacology ph.xs.
– admin & dosage– adverse effects– contraindications– diagnostic use– pharmakinetics– poisoning– toxicity
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Meri Snowdon
Combining
1 *self-help groups 4452 support groups.tw. 2573 *asthma 77084 1 or 2 6155 3 and 4 66 self-help groups/ 7987 6 and 3 68 7 not 5 2
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Meri Snowdon
OR is MORE
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Meri Snowdon
Limits
Local holdings (for library only) Age groups Publication types Language Year of publication Human/animal etc
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Meri Snowdon
Still too much?
Use the most specific subject headings
Use focus Use subheadings Use AND Use limits Restrict textword searching to title
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Meri Snowdon
Or too little?
Use OR Use explode Use All Subheadings Don’t use focus Consider synonyms, alternative
spellings or truncation
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Meri Snowdon
And always remember
Check the MeSH headings used for the most relevant articles and add them to your search if necessary.
You cannot find what is not there!
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Meri Snowdon
Sensitivity and Specificity If a search is too
sensitive, it will retrieve too much irrelevant material
If a search is too specific, it will miss relevant material
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Meri Snowdon
WHY are you searching? Do you want one
decent article on a topic?
Do you need evidence?
Are you writing a letter/book/article/systematic review?
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Meri Snowdon
WHAT are you looking for?
Systematic reviews
Clinical trials Traditional reviews Guidelines General
information Letters
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Meri Snowdon
Look in the right place
Full-text systematic reviews - on CL All Medline clinical trials + others are
in Cochrane Controlled Trials Register Cochrane looks only at
EFFECTIVENESS Medline includes a very wide range of
publications & can answer a wide range of questions
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Meri Snowdon
The right place to look
Cochrane Library for effectiveness questions - diagnosis, prognosis, treatment
Medline for other questions - general information, epidemiology, aetiology, surgical techniques etc
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Meri Snowdon
MeSH on Cochrane Library Many items on the CL are indexed
with MeSH terms BUT not all of them are SO the offical recommendation is
to use MeSH and textword searching combined
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Meri Snowdon
Text word searching
Looks for exact matchesDoesn’t allow for
– variants - pregnancy, pregnant, pregnancies– alternative spellings - diarrhoea, diarrhea– synonyms - preterm birth, premature birth;
cancer, neoplasm
Apart from Knowledge Finder which uses fuzzy logic
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Meri Snowdon
FieldsThe different parts of each item on a database are called fields, and most can be searched individually. In Ovid
– ti = title– au = author– ab = abstract– tw = textword (title or abstract)– in = institution– pg = page
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Meri Snowdon
What you miss
oral thrush 27 candidiasis, oral/ 412
breast cancer 13879 breast neoplasms/ 18754
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Meri Snowdon
What you miss??
heart attack 236 myocardial infarction 11040
myocardial infarction/ 10091
= 949 irrelevant articles - at least!!
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Meri Snowdon
Stop words
Many common, normally insignificant, words are ignored in free text searching. This can be a problem when looking for concepts such as ‘out-of-hours’ or ‘after-hours’. There is no way round this unless there is a relevant subheading. In this case there isn’t!!
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Meri Snowdon
Hyphens
Different systems treat these in different ways. They may be ignored or treated as spaces or treated as hyphens.
To be safe try all options eg– postnatal– post natal– post-natal
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Meri Snowdon
Mizspellins
Ray & Vermeulen found a total of 200 instances of 10 misspelt textwords in Medline between 1966 and 1996.
Ray J G & Vermeulen M JBMJ 1996 313:1658-9
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Meri Snowdon
1996-1999
antibotics 4 asprin 1 dopler 2 cholestrol 1 thrombolism 3 myocardial infraction 34
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Meri Snowdon
haemorrhage??
hamorrhage 1 haemorhage 3 hemorhage 1
and no doubt there’s more!!
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Meri Snowdon
Truncation
This can be used to overcome some of the problems of free text searching. Different wild cards are used by different systems. Mainly * $ and ?
Can be used at the end of a word for truncation eg pregnan$ or in the middle for spelling variants eg wom?n, an?emia
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Meri Snowdon
Textword advantages
New concepts eg new drugs British concepts eg clinical
governance, Project 2000 Tradenames
MeSH headings are updated annually
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Meri Snowdon
Further reading
Sackett D L et al - Evidence-based medicine: how to practice & teach EBM. Churchill Livingstone, 1998
Roberts R - Information for evidence-based care. Radcliffe, 1999
Chambers R - Clinical effectiveness made easy. Radcliffe, 1998