mel-28 genetic interactions mutants in c. elegans worms · mel-28 positive control chromatin his...
TRANSCRIPT
![Page 1: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/1.jpg)
mel-28 Genetic Interactions mutants in C.
elegans wormselegans worms
Anushka ZamanKerry-Ann Walters
Chyna EllisVeronica Chacon
![Page 2: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/2.jpg)
Introduction
This experiment was performed to study the effects of disrupting different genes via RNA interference on wild-type and mel-28 mutant C. elegans. RNA interference is the process of C. elegans. RNA interference is the process of depleting RNA to stop the production of a protein from a certain gene.
• Central Dogma:
DNA RNA Protein
![Page 3: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/3.jpg)
Introduction Cont.
Why C. elegans?
• Small
• Cheap to raise• Cheap to raise
• Transparent
• Fast reproduction rate
• Large egg size
![Page 4: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/4.jpg)
N2 (wild-type) and mel-28 characteristics
N2 strain
• Appearance is normal
• Self fertilizes
•• Lays eggs that hatch
mel-28 mutants
• Appearance is normal
• Self fertilizes
• Lay eggs that don't hatch
http://www.wageningenur.nl/upload_mm/0/7/6/4cdbba7f-4f09-457d-
add0-dafbbbc5a128_Jan%20C_elegans3%5B1%5D_530x395.jpg
![Page 5: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/5.jpg)
Hypothesis/Predictions
Some of these genes interact with mel-28 and redundantly contribute to similar processes to mel-28. If the similar processes to mel-28. If the hypothesis is true, then the RNAi depletion of these genes will cause a novel phenotype in mel-28mutants (and not the wild-type N2 animals).
![Page 6: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/6.jpg)
Procedure
Monday: Three mel-28 heterozygotes were moved to one plate, and wild-type worms (N2) were moved to another. These were left to lay eggs.
Tuesday: The parents were removed from plates.Tuesday: The parents were removed from plates.
Wednesday: Eggs were left to grow and reproduce.
Thursday: Five mel-28 mutants and five N2 worms were chosen from each plate and individualized.
Friday: Observations were recorded regarding theappearance of the worm and the number of offspring.
![Page 7: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/7.jpg)
Results
• Each plate was scored for number of eggs and larvae:
40
50
60
Fert
ilit
y (
# e
gg
s a
nd
larv
ae)
Figure 1: Fertility of N2 and mel-28 worms when treated with different RNAi treatment.
0
10
20
30
L440 his-67 his-68 npp-2 npp-4 npp-17 vrk-1 arf-3 syx-4 mva-6 ykt-6 ggtb-1 syd-9
Fert
ilit
y (
# e
gg
s a
nd
larv
ae)
RNAi treatments
N2
mel-28
![Page 8: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/8.jpg)
Results Cont.
• Each plate was also scored based on health of
Mother.Table 1: Health of Mother in N2 and mel-28 worms
RNAi N2 mel-28
L440 5/5 healthy 3/3 sick/dead
his-67 5/5 healthy 4/4 okay
his-68 5/5 alive 5/5 alive, 50% sickhis-68 5/5 alive 5/5 alive, 50% sick
npp-2 5/5 alive but sick 5/5 alive with pvl
npp-4 5/5 healthy 5/5 alive, 3/5 sick
npp-17 4/5 alive 5/5 dead, no tracks
vrk-1 4/5 alive 5/5 alive, 3/5 sick
arf-3 2/5 alive 3/5 alive
syx-4 5/5 alive but sick 5/5 alive and sick
mva-6 5/5 healthy N/A (all
ykt-6 5/5 healthy 4/5 healthy, 1 died young
ggtb-1 3/5 alive, 2/5 bag of worms N/A
syd-9 2/5 produced larvae 2/5 healthy, 3/5 sick/dead
![Page 9: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/9.jpg)
Conclusion
Table 2: RNAi treatment and interpretation of genetic interactions
Process the genes are involved RNAi Genetic Interaction (Y or N)
L440 Negative control
Mel-28 Positive control
Chromatin His-67 Yes
We were then able to see if there is any mel-28 genetic
interactions with any of the listed genes.
Chromatin His-67 Yes
His-68 Yes
Nuclear envelope Npp-2 Yes
Npp-4 Yes
Npp-17 Yes
Vrk-1 No
Vesicle Fusion Arf-3 No
Syx-4 Yes
Mva-6 Yes
Ykt-6 Yes
Ggbt-1 Yes
Syd-9 No
*Refer to Figure 1 for evidence of genetic interaction
![Page 10: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/10.jpg)
Conclusion Cont.
In conclusion, the hypothesis was supported by the results of the experiment. The RNA
interference affected the fertility of the mel-28 worms. Most of the mel-28 worms showed 28 worms. Most of the mel-28 worms showed signs of sickness, death, or sterility. On the other hand the N2 worms were more fertile
and healthier.
![Page 11: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/11.jpg)
Embryogenesis of mel-28 and N2 worms
• We obtained images of embryo
development in wild-type (N2) worms
and in mel-28 mutants to see the and in mel-28 mutants to see the
difference.
• After taking pictures of development
every 30 seconds we were able to see
clear differences between the two
strains of worms.
![Page 12: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/12.jpg)
Embryogenesis of Mel-28 and N2 worms
1 Cell Stage
N2mel-28
![Page 13: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/13.jpg)
Embryogenesis of Mel-28 and N2 worms
2 Cell Stage
N2 mel-28
![Page 14: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/14.jpg)
Embryogenesis of Mel-28 and N2 worms
3 Cell Stage
N2mel-28
![Page 15: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/15.jpg)
Embryogenesis of Mel-28 and N2 worms
4 Cell StageN2 mel-28
![Page 16: mel-28 Genetic Interactions mutants in C. elegans worms · Mel-28 Positive control Chromatin His -67 Yes We were then able to see if there is any mel-28 genetic interactions with](https://reader036.vdocuments.mx/reader036/viewer/2022070212/6104e0306d706734ed71683b/html5/thumbnails/16.jpg)
Acknowledgements
Special thanks to:
• Our Faculty Mentor: Dr. Anita Fernandez, Assistant
Professor of Developmental Genetics
• Our Counselors: Ada Varuolo and Bay Abunar
• Base Camp Director: Dr. Amanda Harper-Leatherman
• The National Institute on Minority Health and Health
Disparity Populations (NIMHD)