literature mining and large-scale data integration
DESCRIPTION
Computational and Systems Biology Course, Centre for Computational and Systems Biology (CoSBi), Trento, Italy, March 10-14, 2008TRANSCRIPT
![Page 1: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/1.jpg)
Literature mining andlarge-scale data integration
Lars Juhl JensenEMBL Heidelberg
![Page 2: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/2.jpg)
literature mining
![Page 3: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/3.jpg)
why?
![Page 4: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/4.jpg)
![Page 5: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/5.jpg)
too much to read
![Page 6: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/6.jpg)
information retrieval
![Page 7: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/7.jpg)
finding the papers
![Page 8: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/8.jpg)
ad hoc retrieval
![Page 9: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/9.jpg)
user-specified query
![Page 10: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/10.jpg)
“yeast AND cell cycle”
![Page 11: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/11.jpg)
stemming
![Page 12: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/12.jpg)
yeast / yeasts
![Page 13: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/13.jpg)
dynamic query expansion
![Page 14: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/14.jpg)
yeast / S. cerevisiae
![Page 15: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/15.jpg)
ranking
![Page 16: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/16.jpg)
![Page 17: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/17.jpg)
![Page 18: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/18.jpg)
![Page 19: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/19.jpg)
![Page 20: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/20.jpg)
![Page 21: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/21.jpg)
![Page 22: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/22.jpg)
![Page 23: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/23.jpg)
![Page 24: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/24.jpg)
Mitotic cyclin (Clb2)-bound Cdc28 (Cdk1 homolog) directly phosphorylated Swe1 and this modification served as a priming step to promote subsequent Cdc5-dependent Swe1
hyperphosphorylation and degradation
![Page 25: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/25.jpg)
no tool will find it
![Page 26: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/26.jpg)
entity recognition
![Page 27: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/27.jpg)
identifying the substance(s)
![Page 28: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/28.jpg)
Mitotic cyclin (Clb2)-bound Cdc28 (Cdk1 homolog) directly phosphorylated Swe1 and this modification served as a priming step to promote subsequent Cdc5-dependent Swe1
hyperphosphorylation and degradation
![Page 29: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/29.jpg)
Cdc28 yeast
![Page 30: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/30.jpg)
Cdc28 cell cycle
![Page 31: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/31.jpg)
good synonyms list
![Page 32: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/32.jpg)
manual curation
![Page 33: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/33.jpg)
orthographic variation
![Page 34: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/34.jpg)
CDC28
![Page 35: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/35.jpg)
Cdc28p
![Page 36: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/36.jpg)
disambiguation
![Page 37: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/37.jpg)
hairy
![Page 38: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/38.jpg)
SDS
![Page 39: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/39.jpg)
APC
![Page 40: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/40.jpg)
Cdc2
![Page 41: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/41.jpg)
![Page 42: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/42.jpg)
![Page 43: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/43.jpg)
![Page 44: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/44.jpg)
![Page 45: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/45.jpg)
still too much to read
![Page 46: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/46.jpg)
information extraction
![Page 47: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/47.jpg)
formalizing the facts
![Page 48: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/48.jpg)
![Page 49: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/49.jpg)
co-mentioning
![Page 50: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/50.jpg)
statistical methods
![Page 51: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/51.jpg)
NLPNatural Language Processing
![Page 52: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/52.jpg)
Gene and protein names
Cue words for entity recognition
Verbs for relation extraction
[nxexpr The expression of [nxgene the cytochrome genes [nxpg CYC1 and CYC7]]]is controlled by[nxpg HAP1]
![Page 53: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/53.jpg)
Mitotic cyclin (Clb2)-bound Cdc28 (Cdk1 homolog) directly phosphorylated Swe1 and this modification served as a priming step to promote subsequent Cdc5-dependent Swe1
hyperphosphorylation and degradation
![Page 54: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/54.jpg)
![Page 55: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/55.jpg)
no new discoveries
![Page 56: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/56.jpg)
text mining
![Page 57: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/57.jpg)
undiscovered links
![Page 58: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/58.jpg)
![Page 59: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/59.jpg)
Raynaud’s syndrome
![Page 60: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/60.jpg)
fish oil
![Page 61: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/61.jpg)
![Page 62: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/62.jpg)
temporal trends
![Page 63: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/63.jpg)
![Page 64: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/64.jpg)
buzzwords
![Page 65: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/65.jpg)
![Page 66: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/66.jpg)
data integration
![Page 67: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/67.jpg)
association networks
![Page 68: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/68.jpg)
![Page 69: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/69.jpg)
information extraction
![Page 70: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/70.jpg)
![Page 71: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/71.jpg)
curated knowledge
![Page 72: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/72.jpg)
![Page 73: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/73.jpg)
protein interaction data
![Page 74: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/74.jpg)
![Page 75: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/75.jpg)
genetic interaction data
![Page 76: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/76.jpg)
![Page 77: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/77.jpg)
gene expression data
![Page 78: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/78.jpg)
![Page 79: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/79.jpg)
computational predictions
![Page 80: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/80.jpg)
conserved neighborhood
![Page 81: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/81.jpg)
![Page 82: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/82.jpg)
gene fusion
![Page 83: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/83.jpg)
![Page 84: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/84.jpg)
phylogenetic profiles
![Page 85: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/85.jpg)
![Page 86: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/86.jpg)
variable reliability
![Page 87: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/87.jpg)
raw quality scores
![Page 88: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/88.jpg)
![Page 89: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/89.jpg)
![Page 90: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/90.jpg)
![Page 91: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/91.jpg)
not comparable
![Page 92: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/92.jpg)
benchmarking
![Page 93: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/93.jpg)
calibrate vs. gold standard
![Page 94: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/94.jpg)
![Page 95: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/95.jpg)
probabilistic scores
![Page 96: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/96.jpg)
spread over many species
![Page 97: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/97.jpg)
373 genomes
![Page 98: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/98.jpg)
![Page 99: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/99.jpg)
transfer by orthology
![Page 100: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/100.jpg)
![Page 101: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/101.jpg)
combine all evidence
![Page 102: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/102.jpg)
P = 1-(1-P1).(1-P2).(1-P3)…
![Page 103: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/103.jpg)
web resources
![Page 104: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/104.jpg)
![Page 105: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/105.jpg)
![Page 106: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/106.jpg)
signaling networks
![Page 107: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/107.jpg)
phosphoproteomics
![Page 108: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/108.jpg)
![Page 109: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/109.jpg)
in vivo phosphosites
![Page 110: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/110.jpg)
kinases are unknown
![Page 111: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/111.jpg)
computational methods
![Page 112: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/112.jpg)
![Page 113: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/113.jpg)
overprediction
![Page 114: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/114.jpg)
context
![Page 115: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/115.jpg)
scaffolders
![Page 116: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/116.jpg)
association networks
![Page 117: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/117.jpg)
![Page 118: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/118.jpg)
NetworKIN
![Page 119: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/119.jpg)
![Page 120: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/120.jpg)
benchmarking
![Page 121: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/121.jpg)
![Page 122: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/122.jpg)
2.5-fold better accuracy
![Page 123: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/123.jpg)
web resources
![Page 124: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/124.jpg)
![Page 125: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/125.jpg)
![Page 126: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/126.jpg)
summary
![Page 127: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/127.jpg)
literature mining is good
![Page 128: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/128.jpg)
data integration is better
![Page 129: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/129.jpg)
Acknowledgments
Reflect & NLP– Evangelos Pafilis– Jasmin Saric– Rossitza Ouzounova– Sean O’Donoghue– Isabel Rojas
STRING & STITCH– Christian von Mering– Michael Kuhn– Manuel Stark– Samuel Chaffron– Philippe Julien– Tobias Doerks– Jan Korbel– Berend Snel– Martijn Huynen– Peer Bork
NetworKIN & NetPhorest– Rune Linding– Martin Lee Miller– Gerard Ostheimer– Francesca Diella– Karen Colwill– Jing Jin– Pavel Metalnikov– Vivian Nguyen– Adrian Pasculescu– Jin Gyoon Park– Leona D. Samson– Nikolaj Blom– Rob Russell– Peer Bork– Søren Brunak– Michael Yaffe– Tony Pawson
![Page 130: Literature mining and large-scale data integration](https://reader036.vdocuments.mx/reader036/viewer/2022062319/554e9295b4c90526358b4f10/html5/thumbnails/130.jpg)
http://larsjuhljensen.wordpress.com