kankanet: an artificial neural network-based smartphone … · a pilot study in rural madagascar....
TRANSCRIPT
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Ariel Yang, M.D. 2021, Renaissance School of Medicine at Stony Brook University
Coauthors: Nahid Bakhtari, Simon Grandjean Lapierre, Patricia Rakotomanga, Armand Rafalimanantsoa, Juan De Dios Santos, Inès Vigan-Womas, Astrid M. Knoblauch, Luis Marcos
Kankanet: An Artificial Neural Network-Based Smartphone Application as a Point-of-Care Diagnostic Aid for Soil-Transmitted Helminthiases:
A Pilot Study in Rural Madagascar
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Soil-transmitted helminthiases (STH):endemic in rural areas,diagnosed in urban areas
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How are STH diagnosed?
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How prevalent are STH in rural
villages of Ranomafana?
Ascaris lumbricoides 69.0%
Trichuris trichiura 87.6%
Hookworm (Ancylostoma spp.,
Necatur americanus) 3.5%
July 2018 sample of population in
Ambinanindranofotaka and Mangevo (n=113)
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How rural is rural?
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Our goals:What features did we want our solution to have?
Point-of-care Inexpensive Low-resource User-friendly
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Our solution: Kankanet
Kankana, Malagasy for “worm” + net, short for convolutional neural network
Kankanet Microscope Stage Android phone
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How do convolutional networks like
Kankanet work?Raccoon!
RACCOON[87.6]
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Here’s a demo.
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How well did the microscope work?
Species Intensity Sensitivity Specificity Kappa
ascaris
lumbricoides
0 97.10% 0.715
1 60.60% p=0.000
2 97.60%
3 100.00%
total 82.30% 97.10%
trichuris trichiura 0 97.10% 0.715
1 60.60% p=0.000
2 97.60%
3 100.00%
total 82.30% 97.10%
Hookworm 50.00% 69.70% 0.082
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How well did Kankanet work?
Evaluation set Species Se Sp PPV NPV
microscope
images only
AL 85.70% 87.50% 85.70% 87.50%
TT 100% 100% 100% 100%
H 66.7% 100.0% 100.0% 80.0%
UVC images only AL 68.5% 40.0% 92.5% 10.5%
TT 8.3% 96.9% 50.0% 73.8%
H - - - -
All images AL 69.6% 61.1% 92.0% 23.9%
TT 15.4% 97.8% 66.7% 80.0%
H 71.4% 100.0% 100.0% 96.2%
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Cost Benefit
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Where can we go from here?
Kankanet
Developed from Tensorflow, an
open-source library
Improve hardware and softwareIncrease microscope resolution
Add more images to Kankanet database
Empower local health workersTo train or aid human diagnosis
To develop similar point-of-care diagnostic tools
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Questions?Email: [email protected]
Picture acknowledgements: Dat Tran, Luciana Ybarnegaray, CDC DPDx