jim matthews arizona biomedical research commission jungdae kokotov 5am solutions july 27, 2010
TRANSCRIPT
Got Tissue?Got Tissue?How Arizona Created a Statewide How Arizona Created a Statewide Virtual Tissue BankVirtual Tissue Bank
Jim MatthewsArizona Biomedical Research Commission
Jungdae Kokotov5AM Solutions
July 27, 2010 www.5amsolutions.com
Webinar Technical DetailsWebinar Technical Details
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The Issue of TissueThe Issue of Tissue
Biospecimens are at the core of discovery-oriented scientific research.
Issues:Collecting
Annotating
Finding
Obtaining
About ABRCAbout ABRC
What Led Us HereWhat Led Us Here
Our ProcessOur Process
The Solicitation
Our VisionOur Vision
Sun Health Research Institute
Arizona Biospecimen ConsortiumArizona Biospecimen Consortium
A Consortium of Institutional Partners
Our ChallengesOur Challenges
Partnership buy-in
Synchronicity of technology + governance
From Vision to Working SystemFrom Vision to Working System
Agile processes
Engaged stakeholders
5AM participation in Consortium meetings
Biolocator: High Level WorkflowBiolocator: High Level Workflow
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How We Integrate – and Share – the DataHow We Integrate – and Share – the Data
ABLABL
Commercial BioBanking
Solution
Commercial BioBanking
Solution
Custom Application
Custom Application
CBM – NCI’s caGrid
CBM – NCI’s caGrid
Automatic data pull Periodic data import
Share Information Over NCI’s caGridShare Information Over NCI’s caGrid
http://portal.training.cagrid.org/web/guest/home
Our Technical ChallengesOur Technical Challenges
Mapping dataFields
Diverse systems, diverse data fields How do we find a common model…? NCI’s Common Biorepository Model
Values Diverse systems, diverse data values How do we find a common disease vocabulary…? SNOMED-CT
Collection DateQuality RatingSpecimen TypeTumor RatingDisease TypeLiquid NitrogenParaffin Block
Collection DateQuality RatingSpecimen TypeTumor RatingDisease TypeLiquid NitrogenParaffin Block
DateTimeTissue TypeCancer BooleanLab Report Freetext
DateTimeTissue TypeCancer BooleanLab Report Freetext
Malignant Tumor of BreastMalignant Tumor of Breast
Breast CarcinomaBreast Carcinoma
254837009254837009Breast CancerBreast CancerBreast Cancer Type 1 Susceptibility ProteinBreast Cancer Type 1 Susceptibility Protein
https://demo.5amsolutions.com/tissuelocator-web/https://demo.5amsolutions.com/tissuelocator-web/
ABRC’s Future Role in the Arizona Biomedical ConsortiumABRC’s Future Role in the Arizona Biomedical Consortium
Funding the ABL program
Demonstrating usefulness
Assisting institutional partnersEquipment
Personnel
Integration Support
Next Steps for the Arizona Biospecimen ConsortiumNext Steps for the Arizona Biospecimen Consortium
Develop a Platform for Future ServicesCord blood bank
Cord blood patient registry
Trauma center data warehouse linkage
Expand our Partners + ParticipantsPhoenix Indian Medical Center
Phoenix VA
Others
Contact UsContact Us
James MatthewsDeputy Director
Arizona Biomedical Resource Commission
Jungdae KokotovProject ManagerBiolocator
5AM Solutions
Arizona Biospecimen Locator Demo:https://demo.5amsolutions.com/tissuelocator-web/
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