introducing applepie: a botanical annotation network powered by filtered push
DESCRIPTION
James A. Macklin Lei Dou, J ames Hanken, Maureen Kelly, David Lowery, Bertram Ludaescher, Paul J. Morris, Robert A. Morris. Introducing ApplePie: A botanical annotation network powered by Filtered Push. Supported by NSF DBI -0960535. Outline. AppleCore Communicating Knowledge - PowerPoint PPT PresentationTRANSCRIPT
Introducing ApplePie:A botanical annotation network
powered by Filtered Push
James A. Macklin
Lei Dou, James Hanken, Maureen Kelly, David Lowery, Bertram Ludaescher, Paul J. Morris, Robert A. Morris
Supported by NSF DBI-0960535
Outline
AppleCore Communicating Knowledge Digitization Efficiency and Accuracy Kepler Kurator
AppleCore
DarwinCore (DwC) has become a mature set of standards for sharing biodiversity data.
Inherent generality of the documentation has led to broad interpretation of the terms and confusion about which terms to use within a community.
Goal of AppleCore is to tackle this issue for herbaria by providing detailed guidelines based on best practices for publishing botanical specimen information as DwC.
These guidelines include recommended terms, more specific definitions, multiple examples, common issues and controlled vocabularies.
https://code.google.com/p/applecore/
Example: Guidance on Collector Number
DarwinCore: recordNumber
An identifier given to the Occurrence at the time it was recorded. Often serves as a link between field notes and an Occurrence record, such as a specimen collector's number.
AppleCore: Collector number
The collector number is a personal identifier assigned by the collector to the specimen(s) at the time of collecting, and typically written on the specimen label. Collector numbers - also called collection numbers - often form chronological series of specimens collected by one or more collectors. Duplicate specimens typically get the same collector number (as opposed to specimen numbers!) and can as such help to identify duplicates across herbaria.
Publish the collector number in recordNumber. In the case of multiple collector numbers assigned to the same specimen, list the primary collector number first (if feasible) and separate with "|" or "; ".
Morphbank
Symbiota
FP Access PointFP
Helper
FPHelper
Specify6FP
Helper
AnnotationProcessor
AnnotationStore
Analysis: Cluster Duplicates
Publish Messages
FP Node
KeplerFP
Helper
Driver
WebClientFP
Helper
AnnotationProcessorDriver
InstitutionalDatabase
CSV, XML
Export
A new determination transported through ApplePie
FP Node
Communicating Knowledge
PUSH
HISTORY
FILTER
FILTER
Specify 6
Digitization Efficiency and Accuracy
Users can detect duplicates in the network based on fuzzy lookups: collector, collector number, date, etc.
Users can annotate any field in record to provide new determinations, correct errors, add information, etc.
Users can benefit from a consensus record which is generated based on annotation of any/all related records
Users can automatically insert records or fields into Specify 6 or export data using web client
Input DataSet (csv)
GeoLocate IPNI FNA
Filtered PushNetwork
Google Cloud ServiceHuman Curation Visualization In Google Map Kepler Provenance Browser
http://www.youtube.com/watch?v=DEkPbvLsud0
Keywords: SPNHC 2011, Filtered-Push, Kepler, Specimen Curation
Kepler Kurator
Collaborations
Consortium of Northeast Herbaria (CNH) TCN funded in 2012 will use FP network in a similar fashion to what has
been demonstrated SCAN: Southwest Collections of Arthropods
Network TCN funded in 2012 Will use FP for data cleanup by experts using
annotation Your project here!
Feedback
If you would like more information about a botanical Filtered Push Network (ApplePie) please contact us:
Interaction with the user is critical and we want to know how best to design interfaces.
Acknowledgements
Components of this work are licensed under a Creative Commons Attribution-Share Alike 3.0 License
Funding: NSF DBI-0960535
Annotation Interest Group:
Apple Core Contributors:
– Peter Desmet, Patrick Sweeney, John Wieczorek, Paul Morris, Amanda Neill
https://code.google.com/p/applecore/
Project Wiki: http://etaxonomy.org/mw/FilteredPush