integrating space, place, time and form: the challenge of developing standards for geophylogenies
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Integrating space, place, time and form: the challenge of developing standards for geophylogenies. Escher. Flatworm. David M. Kidd Centre for Population Biology, Imperial College London, UK National Evolutionary Synthesis Centre, Durham, North Carolina, USA. [email protected]. - PowerPoint PPT PresentationTRANSCRIPT
Integrating space, place, time and form:the challenge of developing standards
for geophylogenies
David M. KiddCentre for Population Biology, Imperial College London, UK
National Evolutionary Synthesis Centre, Durham, North Carolina, [email protected]
Escher
Fla
twor
m
Form, Time and Space
“The affinities of all the beings of the same class have sometimes been represented by a great tree...the…Tree of Life, which fills with its dead and broken branches the crust of the earth, and covers the surface with its ever branching and beautiful ramifications.”
Charles Darwin 1859. On the origin of species. Ch. 5 Laws of Variation.
Encyclopedia of Life Tree of Life Map of Life
“The affinities of all the beings of the same class have sometimes been represented by a great tree...the…Tree of Life, which fills with its dead and broken branches the crust of the earth, and covers the surface with its ever branching and beautiful ramifications.”
Charles Darwin 1859. On the origin of species. Ch. 5 Laws of Variation.
Observations
EcologicalNiche Model
Ecology
Niche Range
Phylogeny
Ad-hoc Area
Range–AreaMatrix
CladisticBiogeography
Derived Areas
‘Areas of Endemism’Analysis
(PAE, Biotic Elements)
many
Clade History
one
Direct VicarianceAnalysis
(Hovenkamp)
Order and location of vicariance events
many
one
Data
Inference
Analysis
LaGrange DIVA
HierarchicalArea
Relationships
Historical Biogeography Workflow
GeophylogenySpatial network in which topology is defined
by a phylogenetic model or classification and the geographical position of inferred
nodes and the paths of branches are defined by a biogeographical model
Integration of Standards
Place
Time
Form
Space
Geophylogenies PhylogeneticNexML & PhyloXML
GeographicGML
EcologicalEML
TemporalChronos?
Taxonomic (TNC)
Genetic (?)
Palaeoecological,palaeoclimate &palaeo-sealevelreconstructions
?
Continental Drift?
Area BiogeographicICAN Chronogrametic
?
Acknowledgements
GeoPhyloBuilder: Xianhua Liu
Data:Constantino Macias-Garcia & Ella Vazquez (UNAM)Bill Piel (Yale)John Wiens & Sarah Smith (Stony Brook).
Funding:NESCent Research FellowshipNSFb #EF-0423641 Duke, NC State University & UNC
http://evoviz.org