industry perspective: dna melt curves tami shinkawa october 12, 2007
TRANSCRIPT
Industry Perspective:DNA Melt Curves
Tami Shinkawa
October 12, 2007
Overview
• 20.309 vs. Industry
• Industry Experiments– Stability Study– Tm Peak Detail Study
• Real Time PCR Systems
• Cool Conclusions
Melt Curve Analysis
• 20.309 Graph– 5 samples– Tm?
• Industry Graph– 96 samples– Tm?
Industry Study: 12 Hour Stability
Industry Study: Tm Peaks Detail
• Tm = 73.48 oC• Step Size = 0.1o
• 2 distinct peaks• Time = 206 min• 96 well plate
Industry Study: Tm Peaks Detail
• Tm = 73.18 oC• Step Size = 0.3o
– Default Setting
• 1 wavy peak– 2 peaks
• Time = 70 min• 96 well plate
Industry Study: Tm Peaks Detail
• Tm = 72.66 oC• Step Size = 0.5o
• 1 peak– 2 peaks?
• Time = 40 min• 96 well plate
Real-Time PCR Systems
• Incorporate Melt Curve Technology
• Thermal Cycling vs Real-Time PCR
Cool Conclusions
• Taqman
• Power SYBR vs. Fast SYBR
• Forensics, Fish, Pharoahs
References
• Information:– 20.309 Lab Partner Mike Yee– www.appliedbiosystems.com– http://press.appliedbiosystems.com/corpcomm/
applerapress.nsf/ABIDisplayPress/7AAACA21A7A04E5F88257307006342D8?OpenDocument&type=abi
• Images:– www.appliedbiosystems.com– www.stanford.edu/~jmanning/images_big/hatshepsut.jpg– www.sinaicentral.com – www.fletc.gov
? Questions ?