Uniform Resource Layer

Anita Bandrowski Ph DNeuroscience Information Framework

University of California San Diego

Cataloging Biological Resources

httpneuinfoorg

Databases Tissue banksSoftware toolsServices

A resource catalogbull Must have a reasonable account of what is out there

httpneuinfoorg

Image repository

Database

Atlas

NITRC

Harvard

Nencki Inst

How are resources added to the registry

Curators Assign structured metadata to each entry

the metadata is based on a harmonized resource

type ontology

Can we mine relationships between resources

httpneuinfoorg

Human annotations give a different graph

of relationships

Text mining gives a

picture of the most

used resources

PDB

A shared resource registry

httpneuinfoorg

NIF

Social Network of Resources

bull 3DVC ndash 182

bull Force11 ndash 88

bull Monarch ndash 88

bull OneMind ndash 609

bull GeneOntology Tools - 140

1

6

1

2

12

6

Which resources are

shared by multiple

communities

Structured data allows us to answer questions easily

httpneurolexorg

Cataloging Biological Resources

httpneuinfoorg

Databases Tissue banksSoftware toolsServices

A resource catalogbull Must have a reasonable account of what is out there

httpneuinfoorg

Image repository

Database

Atlas

NITRC

Harvard

Nencki Inst

How are resources added to the registry

Curators Assign structured metadata to each entry

the metadata is based on a harmonized resource

type ontology

Can we mine relationships between resources

httpneuinfoorg

Human annotations give a different graph

of relationships

Text mining gives a

picture of the most

used resources

PDB

A shared resource registry

httpneuinfoorg

NIF

Social Network of Resources

bull 3DVC ndash 182

bull Force11 ndash 88

bull Monarch ndash 88

bull OneMind ndash 609

bull GeneOntology Tools - 140

1

6

1

2

12

6

Which resources are

shared by multiple

communities

Structured data allows us to answer questions easily

httpneurolexorg

A resource catalogbull Must have a reasonable account of what is out there

httpneuinfoorg

Image repository

Database

Atlas

NITRC

Harvard

Nencki Inst

How are resources added to the registry

Curators Assign structured metadata to each entry

the metadata is based on a harmonized resource

type ontology

Can we mine relationships between resources

httpneuinfoorg

Human annotations give a different graph

of relationships

Text mining gives a

picture of the most

used resources

PDB

A shared resource registry

httpneuinfoorg

NIF

Social Network of Resources

bull 3DVC ndash 182

bull Force11 ndash 88

bull Monarch ndash 88

bull OneMind ndash 609

bull GeneOntology Tools - 140

1

6

1

2

12

6

Which resources are

shared by multiple

communities

Structured data allows us to answer questions easily

httpneurolexorg

How are resources added to the registry

Curators Assign structured metadata to each entry

the metadata is based on a harmonized resource

type ontology

Can we mine relationships between resources

httpneuinfoorg

Human annotations give a different graph

of relationships

Text mining gives a

picture of the most

used resources

PDB

A shared resource registry

httpneuinfoorg

NIF

Social Network of Resources

bull 3DVC ndash 182

bull Force11 ndash 88

bull Monarch ndash 88

bull OneMind ndash 609

bull GeneOntology Tools - 140

1

6

1

2

12

6

Which resources are

shared by multiple

communities

Structured data allows us to answer questions easily

httpneurolexorg

Can we mine relationships between resources

httpneuinfoorg

Human annotations give a different graph

of relationships

Text mining gives a

picture of the most

used resources

PDB

A shared resource registry

httpneuinfoorg

NIF

Social Network of Resources

bull 3DVC ndash 182

bull Force11 ndash 88

bull Monarch ndash 88

bull OneMind ndash 609

bull GeneOntology Tools - 140

1

6

1

2

12

6

Which resources are

shared by multiple

communities

Structured data allows us to answer questions easily

httpneurolexorg

A shared resource registry

httpneuinfoorg

NIF

Social Network of Resources

bull 3DVC ndash 182

bull Force11 ndash 88

bull Monarch ndash 88

bull OneMind ndash 609

bull GeneOntology Tools - 140

1

6

1

2

12

6

Which resources are

shared by multiple

communities

Structured data allows us to answer questions easily

httpneurolexorg

Social Network of Resources

bull 3DVC ndash 182

bull Force11 ndash 88

bull Monarch ndash 88

bull OneMind ndash 609

bull GeneOntology Tools - 140

1

6

1

2

12

6

Which resources are

shared by multiple

communities

Structured data allows us to answer questions easily

httpneurolexorg

How do you keep a registry current

httpneuinfoorg

BUT DATABASES CAN HAVE NEW DATA EVERY DAY

Each resource implements a different model which works well for the resource

Connectome databases

httpneuinfoorg

Uniform resource layer also meansuniform data access

httpneuinfoorg

Luis Marenco Rixin Wang Yale

gt200 data sourcesgt390M data records

gt15M links to Articles

Data are divided into types

httpneuinfoorg

Uniform search

httpneuinfoorg

Data about the subthalamus

httpneuinfoorg

The Brain and itsrsquo data

Ontologies provide a semantic framework for understanding dataresource landscape

Data sources included in NIF-Complete list httpdisconeuinfoorg-Services httpneuinfoorgdevelopersStriatum

HypothalamusOlfactory bulb

Cerebral cortex

Brain

Bra

in r

egio

n

Data source

VadimAstakhov Kepler Workflow Engine

BUT DATABASES CAN HAVE NEW DATA EVERY DAY

Each resource implements a different model which works well for the resource

Connectome databases

httpneuinfoorg

Uniform resource layer also meansuniform data access

httpneuinfoorg

Luis Marenco Rixin Wang Yale

gt200 data sourcesgt390M data records

gt15M links to Articles

Data are divided into types

httpneuinfoorg

Uniform search

httpneuinfoorg

Data about the subthalamus

httpneuinfoorg

The Brain and itsrsquo data

Ontologies provide a semantic framework for understanding dataresource landscape

Data sources included in NIF-Complete list httpdisconeuinfoorg-Services httpneuinfoorgdevelopersStriatum

HypothalamusOlfactory bulb

Cerebral cortex

Brain

Bra

in r

egio

n

Data source

VadimAstakhov Kepler Workflow Engine

Each resource implements a different model which works well for the resource

Connectome databases

httpneuinfoorg

Uniform resource layer also meansuniform data access

httpneuinfoorg

Luis Marenco Rixin Wang Yale

gt200 data sourcesgt390M data records

gt15M links to Articles

Data are divided into types

httpneuinfoorg

Uniform search

httpneuinfoorg

Data about the subthalamus

httpneuinfoorg

The Brain and itsrsquo data

Ontologies provide a semantic framework for understanding dataresource landscape

Data sources included in NIF-Complete list httpdisconeuinfoorg-Services httpneuinfoorgdevelopersStriatum

HypothalamusOlfactory bulb

Cerebral cortex

Brain

Bra

in r

egio

n

Data source

VadimAstakhov Kepler Workflow Engine

Uniform resource layer also meansuniform data access

httpneuinfoorg

Luis Marenco Rixin Wang Yale

gt200 data sourcesgt390M data records

gt15M links to Articles

Data are divided into types

httpneuinfoorg

Uniform search

httpneuinfoorg

Data about the subthalamus

httpneuinfoorg

The Brain and itsrsquo data

Ontologies provide a semantic framework for understanding dataresource landscape

Data sources included in NIF-Complete list httpdisconeuinfoorg-Services httpneuinfoorgdevelopersStriatum

HypothalamusOlfactory bulb

Cerebral cortex

Brain

Bra

in r

egio

n

Data source

VadimAstakhov Kepler Workflow Engine

gt200 data sourcesgt390M data records

gt15M links to Articles

Data are divided into types

httpneuinfoorg

Uniform search

httpneuinfoorg

Data about the subthalamus

httpneuinfoorg

The Brain and itsrsquo data

Ontologies provide a semantic framework for understanding dataresource landscape

Data sources included in NIF-Complete list httpdisconeuinfoorg-Services httpneuinfoorgdevelopersStriatum

HypothalamusOlfactory bulb

Cerebral cortex

Brain

Bra

in r

egio

n

Data source

VadimAstakhov Kepler Workflow Engine

Data are divided into types

httpneuinfoorg

Uniform search

httpneuinfoorg

Data about the subthalamus

httpneuinfoorg

The Brain and itsrsquo data

Ontologies provide a semantic framework for understanding dataresource landscape

Data sources included in NIF-Complete list httpdisconeuinfoorg-Services httpneuinfoorgdevelopersStriatum

HypothalamusOlfactory bulb

Cerebral cortex

Brain

Bra

in r

egio

n

Data source

VadimAstakhov Kepler Workflow Engine

Uniform search

httpneuinfoorg

Data about the subthalamus

httpneuinfoorg

The Brain and itsrsquo data

Ontologies provide a semantic framework for understanding dataresource landscape

Data sources included in NIF-Complete list httpdisconeuinfoorg-Services httpneuinfoorgdevelopersStriatum

HypothalamusOlfactory bulb

Cerebral cortex

Brain

Bra

in r

egio

n

Data source

VadimAstakhov Kepler Workflow Engine

Data about the subthalamus

httpneuinfoorg

The Brain and itsrsquo data

Ontologies provide a semantic framework for understanding dataresource landscape

Data sources included in NIF-Complete list httpdisconeuinfoorg-Services httpneuinfoorgdevelopersStriatum

HypothalamusOlfactory bulb

Cerebral cortex

Brain

Bra

in r

egio

n

Data source

VadimAstakhov Kepler Workflow Engine

The Brain and itsrsquo data

Ontologies provide a semantic framework for understanding dataresource landscape

Data sources included in NIF-Complete list httpdisconeuinfoorg-Services httpneuinfoorgdevelopersStriatum

HypothalamusOlfactory bulb

Cerebral cortex

Brain

Bra

in r

egio

n

Data source

VadimAstakhov Kepler Workflow Engine

LETrsquoS PLAY A GAME

What is this

httpneuinfoorg

Homunculus

httpneuinfoorg

HomunculusCareful mapping of the entire somatosensory cortex yields a representation of the amount of area devoted to sensing each body region

From the homunculus we learn that humans pay attention to the lips hands and genitals

httpneuinfoorg

Each animal has a set of body regions that it is particularly concerned with

httpneuinfoorg

Is there a data homunculus

If so how can we know it

httpneuinfoorg

Medial lemniscus of midbrain

Habenulo-interpeduncular tract of midbrain

Commissural nucleus of vagus nerve

Medullary raphe nuclear complex

Dorsal longitudinal fasciculus of medulla

Trochlear nerve root

Spinothalamic tract of midbrain

Superior cerebellar peduncle of midbrain

Medial longitudinal fasciculus of midbrain

Central tegmental tract of midbrain

Dorsal longitudinal fasciculus of midbrain

Vagus nerve root

Accessory nerve root

White matter of the cerebellar cortex

Oculomotor nerve root

Brain

Striatum

Amygdala

Thalamus

Cerebellar cortex

Cerebellum

Hypothalamus

Forebrain

Midbrain

Substantia nigra

Third ventricle

Ventral tegmental area

Pons

Medulla oblongata

Cochlear nuclear complex

Most popular Least popular

Brain region popularity

httpneuinfoorg

Which brain regions have most annotations

0

10

20

30

40

50

60

70

80

90

0

10

20

30

40

50

60

70

80

90

Level 0 Brain

Level 1 Hindbrain

Level 2 Medulla

Level 3 Amygdalaeg

Sum per LevelSum for Major Brain Region

httpneuinfoorg

0

10

20

30

40

50

60

70

80

90

100

AB

CD

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NIF

Inte

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NIF

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NIF

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NIF

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NIF

Mo

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NIF

New

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Which data source has any data for brain regions

BAMS BioNot BrainInf

oBrainMaps Funded

Grants

Connectivity

OMIMMGI

httpneuinfoorg

Why donrsquot you have my database of Commissural nucleus of vagusnerve images

bull Please register them with NIF

ndash httpneuinfoorgcindyhtm

bull E-mail abandrowskiucsdedu or infoneuinfoorg

bull Poster OP05 or

bull Demo session D19

httpneuinfoorg

What is this

httpneuinfoorg

Homunculus

httpneuinfoorg

HomunculusCareful mapping of the entire somatosensory cortex yields a representation of the amount of area devoted to sensing each body region

From the homunculus we learn that humans pay attention to the lips hands and genitals

httpneuinfoorg

Each animal has a set of body regions that it is particularly concerned with

httpneuinfoorg

Is there a data homunculus

If so how can we know it

httpneuinfoorg

Medial lemniscus of midbrain

Habenulo-interpeduncular tract of midbrain

Commissural nucleus of vagus nerve

Medullary raphe nuclear complex

Dorsal longitudinal fasciculus of medulla

Trochlear nerve root

Spinothalamic tract of midbrain

Superior cerebellar peduncle of midbrain

Medial longitudinal fasciculus of midbrain

Central tegmental tract of midbrain

Dorsal longitudinal fasciculus of midbrain

Vagus nerve root

Accessory nerve root

White matter of the cerebellar cortex

Oculomotor nerve root

Brain

Striatum

Amygdala

Thalamus

Cerebellar cortex

Cerebellum

Hypothalamus

Forebrain

Midbrain

Substantia nigra

Third ventricle

Ventral tegmental area

Pons

Medulla oblongata

Cochlear nuclear complex

Most popular Least popular

Brain region popularity

httpneuinfoorg

Which brain regions have most annotations

0

10

20

30

40

50

60

70

80

90

0

10

20

30

40

50

60

70

80

90

Level 0 Brain

Level 1 Hindbrain

Level 2 Medulla

Level 3 Amygdalaeg

Sum per LevelSum for Major Brain Region

httpneuinfoorg

0

10

20

30

40

50

60

70

80

90

100

AB

CD

Agi

ngG

enes

DB

Alle

nIn

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An

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od

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Inte

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NIF

Inte

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NIF

Mo

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NIF

Blo

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NIF

New

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On

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OSB

Pu

bM

edH

ealt

h

Res

earc

hC

ross

road

s

T3D

B

Vis

iom

e

YPED

Which data source has any data for brain regions

BAMS BioNot BrainInf

oBrainMaps Funded

Grants

Connectivity

OMIMMGI

httpneuinfoorg

Why donrsquot you have my database of Commissural nucleus of vagusnerve images

bull Please register them with NIF

ndash httpneuinfoorgcindyhtm

bull E-mail abandrowskiucsdedu or infoneuinfoorg

bull Poster OP05 or

bull Demo session D19

httpneuinfoorg

Homunculus

httpneuinfoorg

HomunculusCareful mapping of the entire somatosensory cortex yields a representation of the amount of area devoted to sensing each body region

From the homunculus we learn that humans pay attention to the lips hands and genitals

httpneuinfoorg

Each animal has a set of body regions that it is particularly concerned with

httpneuinfoorg

Is there a data homunculus

If so how can we know it

httpneuinfoorg

Medial lemniscus of midbrain

Habenulo-interpeduncular tract of midbrain

Commissural nucleus of vagus nerve

Medullary raphe nuclear complex

Dorsal longitudinal fasciculus of medulla

Trochlear nerve root

Spinothalamic tract of midbrain

Superior cerebellar peduncle of midbrain

Medial longitudinal fasciculus of midbrain

Central tegmental tract of midbrain

Dorsal longitudinal fasciculus of midbrain

Vagus nerve root

Accessory nerve root

White matter of the cerebellar cortex

Oculomotor nerve root

Brain

Striatum

Amygdala

Thalamus

Cerebellar cortex

Cerebellum

Hypothalamus

Forebrain

Midbrain

Substantia nigra

Third ventricle

Ventral tegmental area

Pons

Medulla oblongata

Cochlear nuclear complex

Most popular Least popular

Brain region popularity

httpneuinfoorg

Which brain regions have most annotations

0

10

20

30

40

50

60

70

80

90

0

10

20

30

40

50

60

70

80

90

Level 0 Brain

Level 1 Hindbrain

Level 2 Medulla

Level 3 Amygdalaeg

Sum per LevelSum for Major Brain Region

httpneuinfoorg

0

10

20

30

40

50

60

70

80

90

100

AB

CD

Agi

ngG

enes

DB

Alle

nIn

stit

ute

An

tib

od

yReg

istr

y

BA

MS

Bio

GR

ID

Bio

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DB

NIF

Inte

grat

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als

NIF

Inte

grat

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ell L

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NIF

Inte

grat

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isea

se

NIF

Inte

grat

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SC

NIF

Inte

grat

ed S

oft

war

e

NIF

Mo

del

s

NIF

Blo

gs

NIF

New

s

OD

E

On

eMin

d

OSB

Pu

bM

edH

ealt

h

Res

earc

hC

ross

road

s

T3D

B

Vis

iom

e

YPED

Which data source has any data for brain regions

BAMS BioNot BrainInf

oBrainMaps Funded

Grants

Connectivity

OMIMMGI

httpneuinfoorg

Why donrsquot you have my database of Commissural nucleus of vagusnerve images

bull Please register them with NIF

ndash httpneuinfoorgcindyhtm

bull E-mail abandrowskiucsdedu or infoneuinfoorg

bull Poster OP05 or

bull Demo session D19

httpneuinfoorg

HomunculusCareful mapping of the entire somatosensory cortex yields a representation of the amount of area devoted to sensing each body region

From the homunculus we learn that humans pay attention to the lips hands and genitals

httpneuinfoorg

Each animal has a set of body regions that it is particularly concerned with

httpneuinfoorg

Is there a data homunculus

If so how can we know it

httpneuinfoorg

Medial lemniscus of midbrain

Habenulo-interpeduncular tract of midbrain

Commissural nucleus of vagus nerve

Medullary raphe nuclear complex

Dorsal longitudinal fasciculus of medulla

Trochlear nerve root

Spinothalamic tract of midbrain

Superior cerebellar peduncle of midbrain

Medial longitudinal fasciculus of midbrain

Central tegmental tract of midbrain

Dorsal longitudinal fasciculus of midbrain

Vagus nerve root

Accessory nerve root

White matter of the cerebellar cortex

Oculomotor nerve root

Brain

Striatum

Amygdala

Thalamus

Cerebellar cortex

Cerebellum

Hypothalamus

Forebrain

Midbrain

Substantia nigra

Third ventricle

Ventral tegmental area

Pons

Medulla oblongata

Cochlear nuclear complex

Most popular Least popular

Brain region popularity

httpneuinfoorg

Which brain regions have most annotations

0

10

20

30

40

50

60

70

80

90

0

10

20

30

40

50

60

70

80

90

Level 0 Brain

Level 1 Hindbrain

Level 2 Medulla

Level 3 Amygdalaeg

Sum per LevelSum for Major Brain Region

httpneuinfoorg

0

10

20

30

40

50

60

70

80

90

100

AB

CD

Agi

ngG

enes

DB

Alle

nIn

stit

ute

An

tib

od

yReg

istr

y

BA

MS

Bio

GR

ID

Bio

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mb

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Bra

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Inte

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Inte

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NIF

Inte

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NIF

Inte

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NIF

Inte

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NIF

Mo

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NIF

New

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eMin

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OSB

Pu

bM

edH

ealt

h

Res

earc

hC

ross

road

s

T3D

B

Vis

iom

e

YPED

Which data source has any data for brain regions

BAMS BioNot BrainInf

oBrainMaps Funded

Grants

Connectivity

OMIMMGI

httpneuinfoorg

Why donrsquot you have my database of Commissural nucleus of vagusnerve images

bull Please register them with NIF

ndash httpneuinfoorgcindyhtm

bull E-mail abandrowskiucsdedu or infoneuinfoorg

bull Poster OP05 or

bull Demo session D19

httpneuinfoorg

Each animal has a set of body regions that it is particularly concerned with

httpneuinfoorg

Is there a data homunculus

If so how can we know it

httpneuinfoorg

Medial lemniscus of midbrain

Habenulo-interpeduncular tract of midbrain

Commissural nucleus of vagus nerve

Medullary raphe nuclear complex

Dorsal longitudinal fasciculus of medulla

Trochlear nerve root

Spinothalamic tract of midbrain

Superior cerebellar peduncle of midbrain

Medial longitudinal fasciculus of midbrain

Central tegmental tract of midbrain

Dorsal longitudinal fasciculus of midbrain

Vagus nerve root

Accessory nerve root

White matter of the cerebellar cortex

Oculomotor nerve root

Brain

Striatum

Amygdala

Thalamus

Cerebellar cortex

Cerebellum

Hypothalamus

Forebrain

Midbrain

Substantia nigra

Third ventricle

Ventral tegmental area

Pons

Medulla oblongata

Cochlear nuclear complex

Most popular Least popular

Brain region popularity

httpneuinfoorg

Which brain regions have most annotations

0

10

20

30

40

50

60

70

80

90

0

10

20

30

40

50

60

70

80

90

Level 0 Brain

Level 1 Hindbrain

Level 2 Medulla

Level 3 Amygdalaeg

Sum per LevelSum for Major Brain Region

httpneuinfoorg

0

10

20

30

40

50

60

70

80

90

100

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Which data source has any data for brain regions

BAMS BioNot BrainInf

oBrainMaps Funded

Grants

Connectivity

OMIMMGI

httpneuinfoorg

Why donrsquot you have my database of Commissural nucleus of vagusnerve images

bull Please register them with NIF

ndash httpneuinfoorgcindyhtm

bull E-mail abandrowskiucsdedu or infoneuinfoorg

bull Poster OP05 or

bull Demo session D19

httpneuinfoorg

Is there a data homunculus

If so how can we know it

httpneuinfoorg

Medial lemniscus of midbrain

Habenulo-interpeduncular tract of midbrain

Commissural nucleus of vagus nerve

Medullary raphe nuclear complex

Dorsal longitudinal fasciculus of medulla

Trochlear nerve root

Spinothalamic tract of midbrain

Superior cerebellar peduncle of midbrain

Medial longitudinal fasciculus of midbrain

Central tegmental tract of midbrain

Dorsal longitudinal fasciculus of midbrain

Vagus nerve root

Accessory nerve root

White matter of the cerebellar cortex

Oculomotor nerve root

Brain

Striatum

Amygdala

Thalamus

Cerebellar cortex

Cerebellum

Hypothalamus

Forebrain

Midbrain

Substantia nigra

Third ventricle

Ventral tegmental area

Pons

Medulla oblongata

Cochlear nuclear complex

Most popular Least popular

Brain region popularity

httpneuinfoorg

Which brain regions have most annotations

0

10

20

30

40

50

60

70

80

90

0

10

20

30

40

50

60

70

80

90

Level 0 Brain

Level 1 Hindbrain

Level 2 Medulla

Level 3 Amygdalaeg

Sum per LevelSum for Major Brain Region

httpneuinfoorg

0

10

20

30

40

50

60

70

80

90

100

AB

CD

Agi

ngG

enes

DB

Alle

nIn

stit

ute

An

tib

od

yReg

istr

y

BA

MS

Bio

GR

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Bio

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Bra

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Bra

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NIF

Inte

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Inte

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NIF

Inte

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Inte

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NIF

Inte

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Mo

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Res

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ross

road

s

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B

Vis

iom

e

YPED

Which data source has any data for brain regions

BAMS BioNot BrainInf

oBrainMaps Funded

Grants

Connectivity

OMIMMGI

httpneuinfoorg

Why donrsquot you have my database of Commissural nucleus of vagusnerve images

bull Please register them with NIF

ndash httpneuinfoorgcindyhtm

bull E-mail abandrowskiucsdedu or infoneuinfoorg

bull Poster OP05 or

bull Demo session D19

httpneuinfoorg

Medial lemniscus of midbrain

Habenulo-interpeduncular tract of midbrain

Commissural nucleus of vagus nerve

Medullary raphe nuclear complex

Dorsal longitudinal fasciculus of medulla

Trochlear nerve root

Spinothalamic tract of midbrain

Superior cerebellar peduncle of midbrain

Medial longitudinal fasciculus of midbrain

Central tegmental tract of midbrain

Dorsal longitudinal fasciculus of midbrain

Vagus nerve root

Accessory nerve root

White matter of the cerebellar cortex

Oculomotor nerve root

Brain

Striatum

Amygdala

Thalamus

Cerebellar cortex

Cerebellum

Hypothalamus

Forebrain

Midbrain

Substantia nigra

Third ventricle

Ventral tegmental area

Pons

Medulla oblongata

Cochlear nuclear complex

Most popular Least popular

Brain region popularity

httpneuinfoorg

Which brain regions have most annotations

0

10

20

30

40

50

60

70

80

90

0

10

20

30

40

50

60

70

80

90

Level 0 Brain

Level 1 Hindbrain

Level 2 Medulla

Level 3 Amygdalaeg

Sum per LevelSum for Major Brain Region

httpneuinfoorg

0

10

20

30

40

50

60

70

80

90

100

AB

CD

Agi

ngG

enes

DB

Alle

nIn

stit

ute

An

tib

od

yReg

istr

y

BA

MS

Bio

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Nat

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Neu

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DB

NIF

Inte

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Inte

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NIF

Inte

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Inte

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Inte

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Res

earc

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ross

road

s

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B

Vis

iom

e

YPED

Which data source has any data for brain regions

BAMS BioNot BrainInf

oBrainMaps Funded

Grants

Connectivity

OMIMMGI

httpneuinfoorg

Why donrsquot you have my database of Commissural nucleus of vagusnerve images

bull Please register them with NIF

ndash httpneuinfoorgcindyhtm

bull E-mail abandrowskiucsdedu or infoneuinfoorg

bull Poster OP05 or

bull Demo session D19

httpneuinfoorg

Which brain regions have most annotations

0

10

20

30

40

50

60

70

80

90

0

10

20

30

40

50

60

70

80

90

Level 0 Brain

Level 1 Hindbrain

Level 2 Medulla

Level 3 Amygdalaeg

Sum per LevelSum for Major Brain Region

httpneuinfoorg

0

10

20

30

40

50

60

70

80

90

100

AB

CD

Agi

ngG

enes

DB

Alle

nIn

stit

ute

An

tib

od

yReg

istr

y

BA

MS

Bio

GR

ID

Bio

Nu

mb

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Bra

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fo

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Bra

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BR

EDE

Cel

lImag

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rary

Cer

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Ch

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Co

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g R

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Dat

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Nat

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Neu

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DB

NIF

Inte

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NIF

Inte

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NIF

Inte

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NIF

Inte

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NIF

Inte

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NIF

Mo

del

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NIF

Blo

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New

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Pu

bM

edH

ealt

h

Res

earc

hC

ross

road

s

T3D

B

Vis

iom

e

YPED

Which data source has any data for brain regions

BAMS BioNot BrainInf

oBrainMaps Funded

Grants

Connectivity

OMIMMGI

httpneuinfoorg

Why donrsquot you have my database of Commissural nucleus of vagusnerve images

bull Please register them with NIF

ndash httpneuinfoorgcindyhtm

bull E-mail abandrowskiucsdedu or infoneuinfoorg

bull Poster OP05 or

bull Demo session D19

httpneuinfoorg

0

10

20

30

40

50

60

70

80

90

100

AB

CD

Agi

ngG

enes

DB

Alle

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An

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od

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istr

y

BA

MS

Bio

GR

ID

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Nat

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Neu

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Neu

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NIF

Inte

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nim

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NIF

Inte

grat

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ell L

ines

NIF

Inte

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isea

se

NIF

Inte

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NIF

Inte

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oft

war

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NIF

Mo

del

s

NIF

Blo

gs

NIF

New

s

OD

E

On

eMin

d

OSB

Pu

bM

edH

ealt

h

Res

earc

hC

ross

road

s

T3D

B

Vis

iom

e

YPED

Which data source has any data for brain regions

BAMS BioNot BrainInf

oBrainMaps Funded

Grants

Connectivity

OMIMMGI

httpneuinfoorg

Why donrsquot you have my database of Commissural nucleus of vagusnerve images

bull Please register them with NIF

ndash httpneuinfoorgcindyhtm

bull E-mail abandrowskiucsdedu or infoneuinfoorg

bull Poster OP05 or

bull Demo session D19

httpneuinfoorg

Why donrsquot you have my database of Commissural nucleus of vagusnerve images

bull Please register them with NIF

ndash httpneuinfoorgcindyhtm

bull E-mail abandrowskiucsdedu or infoneuinfoorg

bull Poster OP05 or

bull Demo session D19

httpneuinfoorg

Maryann Martone PI