ievobio 2012 lightning talk - arachnolingua
TRANSCRIPT
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Arachnolingua: Words about what
spiders doPeter Midford
NESCent@pmidford
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Why?•It’s about the behavior....•Ontologies < Ethograms
•NeuroBehavior Ontology (NBO)•Not much coverage of non-
vertebrate, non-model organisms•Why spiders?•Lots of behavioral diversity
(especially courtship)
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•Experiment in ‘pre-character’ behavior data to semantic web
•Final outcome: Instance supported spider behavior terms residing in either:• in NBO or• spider behavior ontology dependent
on NBO (NBO as UBERON for behavior)
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Eberhard & Huber (1998)
Ruiz et al. 2009
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Arachnolingua
Taxonomy*
NBO
SPD IAO
RO
*NCBI + additional taxa from World Spider Catalog
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AccessKnowledgebase: OWL (RDF/XML) in github repository:User: pmidford, project: Spider-BehaviorLongterm home:http://arachnolingua.net/ontologies/arachnolingua1.owlshould be back soon
Queryable access to on-line triple store coming soon.
Publications for inclusion are all in the ‘Spider Behavior’ Mendeley group (suggestions welcome)
AcknowledgementsJim Balhoff
Hunter Lab (Larry Hunter, Mike Bada, Kevin Livingston)
NESCent