hippocampus - cornell university...exercise 1 5 you recorded from 7 neurons in the hippocampus while...

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Location of the hippocampus in the rat brain Olfactory bulb Location of the hippocampus in the human brain Location of the hippocampus in the rat brain Olfactory bulb Location of the hippocampus in the human brain Hippocampus Hippocampus Hippocampus Hippocampus

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Page 1: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Location of the hippocampus in the rat brain Olfactory bulb

Location of the hippocampus in the human brain

Location of the hippocampus in the rat brain Olfactory bulb

Location of the hippocampus in the human brain

HippocampusHippocampus

HippocampusHippocampus

Page 2: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 3: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Hippocampus:

Thought to be involved in 1) short term memory2) memory consolidation) y3) episodal memory4) spatial orientation

Page 4: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Today: Spatial representation, spatial coding, place cells?Spatial representation, spatial coding, place cells?

Page 5: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 6: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 7: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 8: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 9: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 10: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 11: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

White rat: actual position. red and green: model predictions

spiking activityf llof cells

recorded in this animal

Page 12: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

White rat: actual position. red and green: model predictions

spiking activityf llof cells

recorded in this animal

Approach: at each time step, calculate the probability that rat is at coordinates (x,y)given the neural activity. The parameters of such a model are continuously updatedand the model can predict the location of the rat better and better. The parameters can then give insight into the characteristics of the neural activity relevant to encoding position. The evolution of the parameters can give insights into the plasticity of the system.

Page 13: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 14: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

In space

Page 15: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Cells fire only where there is food!

Page 16: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 17: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 18: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Exercise

1 5

You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each neuron’s “place field”. * * 6

5

2

p

a) What would you expect to see I your recordings while the rat followed the path depicted in red asterisks ?

b) Could you predict the responses of an eighth neuron from

* * * * * * *3

4

7

b) Cou d you p ed ct t e espo ses o a e g t eu o othose of the 7 neurons you recorded? * * * * * * ** *

Page 19: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Visual neurons

Hippocampal neurons

?

Hippocampal neurons

Page 20: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Visual neurons

Hippocampal neurons

? ?

Hippocampal neurons

Page 21: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Is place cells the right name? p g

Page 22: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Simultaneous theta and gamma oscillations recoded in the rat hippocampusSimultaneous theta and gamma oscillations recoded in the rat hippocampus

Theta oscillations : 4-10 Hz 100 ms

Theta oscillations : 4-10 Hz 100 ms

Gamma oscillations : 40-60 Hz Gamma oscillations : 40-60 Hz 25 ms25 ms

Page 23: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 24: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

There are approximately 5-7 gamma cycles in one theta cycle;hen a rat mo es on a linear track hippocampal p ramidal cellswhen a rat moves on a linear track, hippocampal pyramidal cells

spike on a given gamma cycle depending on the rat's location (phase precession)

Page 25: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

-

rate

360o

phase

360o

Page 26: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

ate

Firin

g ra

Location (cm)( )

Page 27: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place
Page 28: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

ate

Firin

g ra

Loca tion (cm )

f the

ta

( )

Pha

se o

f

L ti ( )Location (cm)

Page 29: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

ase

of th

eta

ng ra

te/P

ha

Location (cm)

Firi

Spatial resolution ofSpatial resolution of spike alone

Spatial resolution of phaseSpatial resolution of phase

Page 30: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Does rate alone convey information?

Page 31: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Nature 425, 828-832 (23 October 2003) | doi:10.1038/nature02058; , ( ) | ;Received 15 May 2003; Accepted 15 September 2003

Independent rate and temporal coding in hippocampal pyramidal cellsJohn Huxter1 3 Neil Burgess1 2 & John O'Keefe1 2John Huxter1,3, Neil Burgess1,2 & John O Keefe1,2

Page 32: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

a. Behavioural task: rat shuttles back and forth along linear track between food rewards contained in cups attached to movable walls.

Page 33: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

b, False-colour firing field of a place cell created from multiple runs in the eastward direction.

Page 34: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

c, EEG theta rhythm and place cell firing (in red) for the same cell on a single eastward run. Ticks above the spikes indicate + to - zero crossings g p g(0°/360° phase) for each theta wave, lines through theta waves indicate 270°. Bursts of spikes occur at higher than theta frequency causing each successive burst to move to an earlier phase of the theta cycle, despite initially rising then falling firing rate Theta cycle phase of spikes forinitially rising, then falling firing rate. Theta cycle phase of spikes for multiple runs from a place cell is plotted against position

Page 35: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Rate of burstsis higher than theta : as a consequencecells fire earlierand earlier during thetaduring theta(phase precession)Phase and rateco-vary

Page 36: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

a, Phase depends on location, b i hi h t i th l thi dbeing highest in the early third of each field, lower in the middle third, and lowest in the late third.

c IFR starts low increases inc, IFR starts low, increases in the middle third and then decreases in the late part of the field.

IFR: Instantaneous firing rate

Page 37: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Rate does not affect phase

Page 38: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Phase and rate can be independent – do they encode different variables?

Page 39: Hippocampus - Cornell University...Exercise 1 5 You recorded from 7 neurons in the hippocampus while a rat was running around in a box. The circles represent each * neuron’s “place

Rate correlates with running speed!