harwin de vries msc., prof. albert wagelmans, prof. joris ......optimizing population screening for...

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Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van de Klundert June 7 th , 2017 De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 1 / 18

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Page 1: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Optimizing Population Screening for Infectious Diseases

Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van deKlundert

June 7th, 2017

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 1 / 18

Page 2: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Introduction: 2 challenges

1. Linking decisions to outcomes:

Decisions Outcomes

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 2 / 18

Page 3: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Introduction: 2 challenges

1. Linking decisions to outcomes:

Decisions KPIs

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 3 / 18

Page 4: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Introduction: 2 challenges

1. Linking decisions to outcomes:

Decisions OutcomesKPIs

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 4 / 18

Page 5: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Introduction: 2 challenges

2. Transforming insight into better decisions:

Decisions Outcomes

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 5 / 18

Page 6: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Introduction: 2 challenges

2. Transforming insight into better decisions:

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 6 / 18

Page 7: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Problem Description

Human African Trypanosomiasis (HAT; sleeping sickness):

Slowly progressing parasitic diseaseTransmitted by Tsetse flyWHO: 30000 cases

Two disease stages (both appr. 1.5 years):1 Symptoms absent or non-specific2 Neurological problems

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 7 / 18

Page 8: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Problem Description

Human African Trypanosomiasis (HAT; sleeping sickness):

Slowly progressing parasitic diseaseTransmitted by Tsetse flyWHO: 30000 cases

Two disease stages (both appr. 1.5 years):1 Symptoms absent or non-specific2 Neurological problems

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 7 / 18

Page 9: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Problem Description

Population screening crucial:

Infected people do not observe disease/ do not obtain care

Source for infection of Tsetse

Result: HAT spreads silently

Current strategy (DRC)

30 mobile screening teams

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 8 / 18

Page 10: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Problem Description

Population screening crucial:

Infected people do not observe disease/ do not obtain care

Source for infection of Tsetse

Result: HAT spreads silently

Current strategy (DRC)

30 mobile screening teams

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 8 / 18

Page 11: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Problem Description

Main research question:

Given current screening capacity...

which villages to visit ...

at what time interval ...

to minimize the total averageexpected prevalence level?

?

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 9 / 18

Page 12: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Problem Description

Main research question:

Given current screening capacity...

which villages to visit ...

at what time interval ...

to minimize the total averageexpected prevalence level?

?

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 9 / 18

Page 13: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Problem Description

Main research question:

Given current screening capacity...

which villages to visit ...

at what time interval ...

to minimize the total averageexpected prevalence level?

?

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 9 / 18

Page 14: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Problem Description

Main research question:

Given current screening capacity...

which villages to visit ...

at what time interval ...

to minimize the total averageexpected prevalence level?

?

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 9 / 18

Page 15: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Problem Description

Main research question:

Given current screening capacity...

which villages to visit ...

at what time interval ...

to minimize the total averageexpected prevalence level?

?

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 9 / 18

Page 16: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Linking decisions to outcomes

Decisions Outcomes

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 10 / 18

Page 17: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Link Between Decisions and Prevalence

2004 2006 2008 2010 2012 2014 20160

0.001

0.002

0.003

0.004

0.005

0.006

0.007

0.008

0.009

0.01

Time

Expec

ted p

reval

ence

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 11 / 18

Page 18: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Transforming insight into better decisions

Decisions Outcomes

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 12 / 18

Page 19: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Frequency required for expected eradication

0

←4.9

100

1

2

10090

3

Required screening interval (years)

Sensitivity (%)

4

90

Participation (%)

5

8080

70 70

←0.84

1

1.5

2

2.5

3

3.5

4

4.5

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 13 / 18

Page 20: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Solution method for the general planning problem

Sophisticated methods:

Column generation

MIP

Local optimization

Simple policies:

Equalizing

Filtering

Differentiation

Burden level

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 14 / 18

Page 21: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Solution method for the general planning problem

Sophisticated methods:

Column generation

MIP

Local optimization

Simple policies:

Equalizing

Filtering

Differentiation

Burden level

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 14 / 18

Page 22: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Solution method for the general planning problem

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 15 / 18

Page 23: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Solution method for the general planning problem

0

20

40

60

80

100

120

140

160

180

Optimized Equalization Filtering Differentiation Burden-level

Average exp. # infected Final exp. # infected

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 16 / 18

Page 24: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Conclusions

Linking decisions to outcomes...

can be complex

becomes easier (more data)

yields important insights

Translating the link into decisions...

can be essential

can benefit both policy makers and people on the ground

does not always require advanced tools

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 17 / 18

Page 25: Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris ......Optimizing Population Screening for Infectious Diseases Harwin de Vries MSc., Prof. Albert Wagelmans, Prof. Joris van

Conclusions

Linking decisions to outcomes...

can be complex

becomes easier (more data)

yields important insights

Translating the link into decisions...

can be essential

can benefit both policy makers and people on the ground

does not always require advanced tools

De Vries, Wagelmans, Van de Klundert Optimizing Population Screening 17 / 18