harmon arbor v2

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Page 1: Harmon arbor v2
Page 2: Harmon arbor v2

“Tell us a story from before we can remember”--- from The Tree of Life (2011)

Page 3: Harmon arbor v2

Arbor

• Arbor: big picture

• Main features

• Next-generation comparative biology

https://github.com/arborworkflows

Page 4: Harmon arbor v2

Arbor: big picture

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Comparative methods through visual workflows

Girder user management

Romanesco workflow engine

Page 6: Harmon arbor v2
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Comparative methods through visual workflows

Data exchange via

web services

Page 8: Harmon arbor v2

Open Tree of Life

GBIF / BISONDryad

Phenomics

MongoDB database

Page 9: Harmon arbor v2

Comparative methods through visual workflows

Data exchange via

web services

Implement novel analysis workflows

Page 10: Harmon arbor v2
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Comparative methods through visual workflows

Data exchange via

web services

Implement novel analysis workflows

Scale to very large trees

Page 12: Harmon arbor v2

www.onezoom.org

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future vision

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easy mode and arbor

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arbor pro

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List of cool

species

open tree

morpho-bank

GBIF

Phylo-geo-trait

analysis

Plot results

Results to

datbase

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https://arbor.kitware.com

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https://github.com/arborworkflows/arborworkflows.github.com/wiki/Arbor-Demonstration-Videos

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Arbor links to OpenTree

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Luke HARMON Curtis LISLE

Chelsea SPECHT Jorge SOBERON Bob THACKER

Charlie HUGHESWes TURNER Jeff BAUMES